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Create version 24.2.2

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This commit is contained in:
mvdbeek
2025-03-08 11:44:03 +01:00
parent 54de00e2cf
commit c80d7d92a1
43 changed files with 192 additions and 95 deletions
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lib/galaxy/version.py
+1 -1
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@@ -1,3 +1,3 @@
VERSION_MAJOR = "24.2"
VERSION_MINOR = "2.dev0"
VERSION_MINOR = "2"
VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "")
packages/app/HISTORY.rst
+24 -3
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@@ -3,11 +3,32 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
=========
Bug fixes
=========
* Fix conditional dependency path resolution by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19723 <https://github.com/galaxyproject/galaxy/pull/19723>`_
* Allow tool state changes in refactor actions by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19730 <https://github.com/galaxyproject/galaxy/pull/19730>`_
* Update fs.dropboxfs conditional dependency version to 1.0.3 by `@davelopez <https://github.com/davelopez>`_ in `#19741 <https://github.com/galaxyproject/galaxy/pull/19741>`_
* Follow-up to #19651: Do not reassign: method modifies object in-place by `@jdavcs <https://github.com/jdavcs>`_ in `#19746 <https://github.com/galaxyproject/galaxy/pull/19746>`_
============
Enhancements
============
* Add bwa_mem2_index directory datatype, framework enhancements for testing directories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19694 <https://github.com/galaxyproject/galaxy/pull/19694>`_
* Skip slow tests for manage_db, db_dev scripts by `@jdavcs <https://github.com/jdavcs>`_ in `#19744 <https://github.com/galaxyproject/galaxy/pull/19744>`_
=============
Other changes
=============
* Make k8s user and group ids overriddable per job by `@nuwang <https://github.com/nuwang>`_ in `#19568 <https://github.com/galaxyproject/galaxy/pull/19568>`_
-------------------
24.2.1 (2025-02-28)
packages/app/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-app
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/auth/HISTORY.rst
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@@ -3,11 +3,11 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
No recorded changes since last release
-------------------
24.2.1 (2025-02-28)
packages/auth/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-auth
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/config/HISTORY.rst
+14 -3
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@@ -3,11 +3,22 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
=========
Bug fixes
=========
* Fix conditional dependency path resolution by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19723 <https://github.com/galaxyproject/galaxy/pull/19723>`_
============
Enhancements
============
* Add bwa_mem2_index directory datatype, framework enhancements for testing directories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19694 <https://github.com/galaxyproject/galaxy/pull/19694>`_
-------------------
24.2.1 (2025-02-28)
packages/config/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-config
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/data/HISTORY.rst
+20 -3
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@@ -3,11 +3,28 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
=========
Bug fixes
=========
* Fix recording transform action name. by `@jmchilton <https://github.com/jmchilton>`_ in `#19672 <https://github.com/galaxyproject/galaxy/pull/19672>`_
============
Enhancements
============
* Add bwa_mem2_index directory datatype, framework enhancements for testing directories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19694 <https://github.com/galaxyproject/galaxy/pull/19694>`_
=============
Other changes
=============
* Backport #19620 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19725 <https://github.com/galaxyproject/galaxy/pull/19725>`_
-------------------
24.2.1 (2025-02-28)
packages/data/setup.cfg
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-data
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/files/HISTORY.rst
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@@ -3,11 +3,16 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
=========
Bug fixes
=========
* Fix RDM token access for user-defined file sources by `@davelopez <https://github.com/davelopez>`_ in `#19768 <https://github.com/galaxyproject/galaxy/pull/19768>`_
-------------------
24.2.1 (2025-02-28)
packages/files/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-files
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/job_execution/HISTORY.rst
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.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
No recorded changes since last release
-------------------
24.2.1 (2025-02-28)
packages/job_execution/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-job-execution
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/job_metrics/HISTORY.rst
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.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
No recorded changes since last release
-------------------
24.2.1 (2025-02-28)
packages/job_metrics/setup.cfg
+1 -1
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@@ -29,7 +29,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-job-metrics
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/navigation/HISTORY.rst
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@@ -3,11 +3,11 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
No recorded changes since last release
-------------------
24.2.1 (2025-02-28)
packages/navigation/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-navigation
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/objectstore/HISTORY.rst
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@@ -3,11 +3,11 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
No recorded changes since last release
-------------------
24.2.1 (2025-02-28)
packages/objectstore/setup.cfg
+1 -1
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@@ -29,7 +29,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-objectstore
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/schema/HISTORY.rst
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@@ -3,11 +3,16 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
============
Enhancements
============
* Add bwa_mem2_index directory datatype, framework enhancements for testing directories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19694 <https://github.com/galaxyproject/galaxy/pull/19694>`_
-------------------
24.2.1 (2025-02-28)
packages/schema/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-schema
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/selenium/HISTORY.rst
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@@ -3,11 +3,11 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
No recorded changes since last release
-------------------
24.2.1 (2025-02-28)
packages/selenium/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-selenium
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/test_api/HISTORY.rst
+8 -3
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@@ -3,11 +3,16 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
=========
Bug fixes
=========
* Allow tool state changes in refactor actions by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19730 <https://github.com/galaxyproject/galaxy/pull/19730>`_
-------------------
24.2.1 (2025-02-28)
packages/test_api/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-test-api
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/test_base/HISTORY.rst
+8 -3
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@@ -3,11 +3,16 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
============
Enhancements
============
* Add bwa_mem2_index directory datatype, framework enhancements for testing directories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19694 <https://github.com/galaxyproject/galaxy/pull/19694>`_
-------------------
24.2.1 (2025-02-28)
packages/test_base/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-test-base
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/test_driver/HISTORY.rst
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@@ -3,11 +3,16 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
============
Enhancements
============
* Add bwa_mem2_index directory datatype, framework enhancements for testing directories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19694 <https://github.com/galaxyproject/galaxy/pull/19694>`_
-------------------
24.2.1 (2025-02-28)
packages/test_driver/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-test-driver
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/tool_shed/HISTORY.rst
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@@ -3,11 +3,16 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
============
Enhancements
============
* Skip slow tests for manage_db, db_dev scripts by `@jdavcs <https://github.com/jdavcs>`_ in `#19744 <https://github.com/galaxyproject/galaxy/pull/19744>`_
-------------------
24.2.1 (2025-02-28)
packages/tool_shed/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-tool-shed
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/tool_util/HISTORY.rst
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@@ -3,11 +3,24 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
=========
Bug fixes
=========
* add missing linter name argument to linter report function calls by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19707 <https://github.com/galaxyproject/galaxy/pull/19707>`_
* Assertion linter fixes by `@jmchilton <https://github.com/jmchilton>`_ in `#19715 <https://github.com/galaxyproject/galaxy/pull/19715>`_
* Fix dataypes linter: allow auto for output tags by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19757 <https://github.com/galaxyproject/galaxy/pull/19757>`_
============
Enhancements
============
* Add bwa_mem2_index directory datatype, framework enhancements for testing directories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19694 <https://github.com/galaxyproject/galaxy/pull/19694>`_
-------------------
24.2.1 (2025-02-28)
packages/tool_util/setup.cfg
+1 -1
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@@ -29,7 +29,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-tool-util
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/tours/HISTORY.rst
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@@ -3,11 +3,11 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
No recorded changes since last release
-------------------
24.2.1 (2025-02-28)
packages/tours/setup.cfg
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-tours
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/util/HISTORY.rst
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@@ -3,11 +3,16 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
============
Enhancements
============
* Add bwa_mem2_index directory datatype, framework enhancements for testing directories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19694 <https://github.com/galaxyproject/galaxy/pull/19694>`_
-------------------
24.2.1 (2025-02-28)
packages/util/setup.cfg
+1 -1
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@@ -29,7 +29,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-util
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/web_apps/HISTORY.rst
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@@ -3,11 +3,11 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
No recorded changes since last release
-------------------
24.2.1 (2025-02-28)
packages/web_apps/setup.cfg
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-web-apps
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/web_framework/HISTORY.rst
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@@ -3,11 +3,11 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
No recorded changes since last release
-------------------
24.2.1 (2025-02-28)
packages/web_framework/setup.cfg
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-web-framework
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True
packages/web_stack/HISTORY.rst
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@@ -3,11 +3,11 @@ History
.. to_doc
-----------
24.2.2.dev0
-----------
-------------------
24.2.2 (2025-03-08)
-------------------
No recorded changes since last release
-------------------
24.2.1 (2025-02-28)
packages/web_stack/setup.cfg
+1 -1
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@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-web-stack
url = https://github.com/galaxyproject/galaxy
version = 24.2.2.dev0
version = 24.2.2
[options]
include_package_data = True