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Merge pull request #5460 from jmchilton/fix_oom_parse

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[18.01] Fix tool stdio level parsing for OOM level.
This commit is contained in:
Dannon Baker
2018-02-05 15:04:30 -05:00
committed by GitHub
parent f0a8243f7d 2f020ef944
commit c3ada7f169
1 changed files with 2 additions and 0 deletions
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lib/galaxy/tools/parser/xml.py
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@@ -857,6 +857,8 @@ class StdioParser(object):
return_level = StdioErrorLevel.LOG
elif (re.search("warning", err_level, re.IGNORECASE)):
return_level = StdioErrorLevel.WARNING
elif (re.search("fatal_oom", err_level, re.IGNORECASE)):
return_level = StdioErrorLevel.FATAL_OOM
elif (re.search("fatal", err_level, re.IGNORECASE)):
return_level = StdioErrorLevel.FATAL
else: