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Merge branch 'release_24.2' into dev
# Conflicts: # lib/galaxy/version.py # packages/app/HISTORY.rst # packages/auth/HISTORY.rst # packages/config/HISTORY.rst # packages/data/HISTORY.rst # packages/files/HISTORY.rst # packages/job_execution/HISTORY.rst # packages/job_metrics/HISTORY.rst # packages/navigation/HISTORY.rst # packages/objectstore/HISTORY.rst # packages/schema/HISTORY.rst # packages/selenium/HISTORY.rst # packages/test_api/HISTORY.rst # packages/test_base/HISTORY.rst # packages/test_driver/HISTORY.rst # packages/tool_shed/HISTORY.rst # packages/tool_util/HISTORY.rst # packages/tours/HISTORY.rst # packages/util/HISTORY.rst # packages/web_apps/HISTORY.rst # packages/web_framework/HISTORY.rst # packages/web_stack/HISTORY.rst
This commit is contained in:
John Davis
+143
-1
@@ -9,6 +9,148 @@ History
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-------------------
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24.2.0 (2025-02-06)
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-------------------
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=========
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Bug fixes
|
||||
=========
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||||
|
||||
* Drop "Send to cloud" tool and associated cloudauthz code by `@jdavcs <https://github.com/jdavcs>`_ in `#18196 <https://github.com/galaxyproject/galaxy/pull/18196>`_
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* Dynamics options add library dataset by `@gagayuan <https://github.com/gagayuan>`_ in `#18198 <https://github.com/galaxyproject/galaxy/pull/18198>`_
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* Fix some deprecations by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18433 <https://github.com/galaxyproject/galaxy/pull/18433>`_
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* Fixes for errors reported by mypy 1.11.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18608 <https://github.com/galaxyproject/galaxy/pull/18608>`_
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* Update mercurial by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18686 <https://github.com/galaxyproject/galaxy/pull/18686>`_
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* Replace types-pkg-resources with types-setuptools by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18708 <https://github.com/galaxyproject/galaxy/pull/18708>`_
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* Fix tag processing in library upload by `@davelopez <https://github.com/davelopez>`_ in `#18714 <https://github.com/galaxyproject/galaxy/pull/18714>`_
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* Update ruff to 0.6.1 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18716 <https://github.com/galaxyproject/galaxy/pull/18716>`_
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* Fix new flake8-bugbear B039 and mypy type-var errors by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18755 <https://github.com/galaxyproject/galaxy/pull/18755>`_
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* Fixes and tests for data fetch models. by `@jmchilton <https://github.com/jmchilton>`_ in `#18834 <https://github.com/galaxyproject/galaxy/pull/18834>`_
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* data_column params: offer same columns with and without use_header_names by `@wm75 <https://github.com/wm75>`_ in `#18879 <https://github.com/galaxyproject/galaxy/pull/18879>`_
|
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* Fix issue with generating slug for sharing by `@arash77 <https://github.com/arash77>`_ in `#18986 <https://github.com/galaxyproject/galaxy/pull/18986>`_
|
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* Fix the bioblend test failures by `@arash77 <https://github.com/arash77>`_ in `#18991 <https://github.com/galaxyproject/galaxy/pull/18991>`_
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* Fix job directory not being cleaned up by `@davelopez <https://github.com/davelopez>`_ in `#18997 <https://github.com/galaxyproject/galaxy/pull/18997>`_
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* Fixes random job failures in kubernetes by `@mapk-amazon <https://github.com/mapk-amazon>`_ in `#19001 <https://github.com/galaxyproject/galaxy/pull/19001>`_
|
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* Fix numerous issues with tool input format "21.01" by `@jmchilton <https://github.com/jmchilton>`_ in `#19030 <https://github.com/galaxyproject/galaxy/pull/19030>`_
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* Fix test_stock.py unit test by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19037 <https://github.com/galaxyproject/galaxy/pull/19037>`_
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* quota: do not complain on no-change of default by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19045 <https://github.com/galaxyproject/galaxy/pull/19045>`_
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* Normalize usernames to lowercase in OIDC authentication by `@arash77 <https://github.com/arash77>`_ in `#19131 <https://github.com/galaxyproject/galaxy/pull/19131>`_
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* 2 small uv config fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19146 <https://github.com/galaxyproject/galaxy/pull/19146>`_
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* Fix invocation metrics usability by providing job context. by `@jmchilton <https://github.com/jmchilton>`_ in `#19279 <https://github.com/galaxyproject/galaxy/pull/19279>`_
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* Fix import of previously-deleted TRS workflow by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19311 <https://github.com/galaxyproject/galaxy/pull/19311>`_
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* Fix quota usage with user object stores by `@davelopez <https://github.com/davelopez>`_ in `#19323 <https://github.com/galaxyproject/galaxy/pull/19323>`_
|
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* Fix workflows with optional non-default parameter input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19332 <https://github.com/galaxyproject/galaxy/pull/19332>`_
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* Backport #19001 kubernetes api client fix by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19338 <https://github.com/galaxyproject/galaxy/pull/19338>`_
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* Partial backport of #19331 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19342 <https://github.com/galaxyproject/galaxy/pull/19342>`_
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* Use select_from_url test data from github, not usegalaxy.org by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19352 <https://github.com/galaxyproject/galaxy/pull/19352>`_
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* Fix to only show ChatGXY when available. by `@dannon <https://github.com/dannon>`_ in `#19389 <https://github.com/galaxyproject/galaxy/pull/19389>`_
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* Fix job parameter summary for inputs without label by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19427 <https://github.com/galaxyproject/galaxy/pull/19427>`_
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* Show Keycloak provider label in UI by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19447 <https://github.com/galaxyproject/galaxy/pull/19447>`_
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* Expression tool format source backport by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19466 <https://github.com/galaxyproject/galaxy/pull/19466>`_
|
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* backport of defensive refresh tokens by `@martenson <https://github.com/martenson>`_ in `#19471 <https://github.com/galaxyproject/galaxy/pull/19471>`_
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* Improve relabel from file error if file doesn't contain enough lines by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19480 <https://github.com/galaxyproject/galaxy/pull/19480>`_
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* Serialize message exceptions on execution error by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19483 <https://github.com/galaxyproject/galaxy/pull/19483>`_
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* Fail with error message when submitting invalid request by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19489 <https://github.com/galaxyproject/galaxy/pull/19489>`_
|
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* Fix deleting lddas in batch by `@davelopez <https://github.com/davelopez>`_ in `#19506 <https://github.com/galaxyproject/galaxy/pull/19506>`_
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* Skip token refresh without refresh token in psa by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19514 <https://github.com/galaxyproject/galaxy/pull/19514>`_
|
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* Downgrade 'InteractiveTools are not enabled' to warning by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19518 <https://github.com/galaxyproject/galaxy/pull/19518>`_
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* Fix extracting workflows from purged and deleted histories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19525 <https://github.com/galaxyproject/galaxy/pull/19525>`_
|
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* Fix error message when subworkflow input connection missing by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19526 <https://github.com/galaxyproject/galaxy/pull/19526>`_
|
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* Fix remap for parameter called id by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19532 <https://github.com/galaxyproject/galaxy/pull/19532>`_
|
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* Fix admin cancel job message not being displayed to the user by `@davelopez <https://github.com/davelopez>`_ in `#19537 <https://github.com/galaxyproject/galaxy/pull/19537>`_
|
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* Use instance wide default ``real_system_username`` if not defined on destination by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19544 <https://github.com/galaxyproject/galaxy/pull/19544>`_
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============
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Enhancements
|
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============
|
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|
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* Add clean up job working directory as celery task by `@sanjaysrikakulam <https://github.com/sanjaysrikakulam>`_ in `#15816 <https://github.com/galaxyproject/galaxy/pull/15816>`_
|
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* Experimental galactic wizard by `@dannon <https://github.com/dannon>`_ in `#15860 <https://github.com/galaxyproject/galaxy/pull/15860>`_
|
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* Feature - stdout live reporting by `@gecage952 <https://github.com/gecage952>`_ in `#16975 <https://github.com/galaxyproject/galaxy/pull/16975>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18226 <https://github.com/galaxyproject/galaxy/pull/18226>`_
|
||||
* Allow OAuth 2.0 user defined file sources (w/Dropbox integration) by `@jmchilton <https://github.com/jmchilton>`_ in `#18272 <https://github.com/galaxyproject/galaxy/pull/18272>`_
|
||||
* More data access tests, some refactoring and cleanup by `@jdavcs <https://github.com/jdavcs>`_ in `#18312 <https://github.com/galaxyproject/galaxy/pull/18312>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18406 <https://github.com/galaxyproject/galaxy/pull/18406>`_
|
||||
* Add Python 3.13 support by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18449 <https://github.com/galaxyproject/galaxy/pull/18449>`_
|
||||
* Add onedata templates by `@bwalkowi <https://github.com/bwalkowi>`_ in `#18457 <https://github.com/galaxyproject/galaxy/pull/18457>`_
|
||||
* Support high-availability setups for the interactive tools proxy by `@kysrpex <https://github.com/kysrpex>`_ in `#18481 <https://github.com/galaxyproject/galaxy/pull/18481>`_
|
||||
* Add unique constraints to the email and username fields in the galaxy_user table by `@jdavcs <https://github.com/jdavcs>`_ in `#18493 <https://github.com/galaxyproject/galaxy/pull/18493>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18505 <https://github.com/galaxyproject/galaxy/pull/18505>`_
|
||||
* Improvements for K8S deployment (especially ITs) by `@almahmoud <https://github.com/almahmoud>`_ in `#18514 <https://github.com/galaxyproject/galaxy/pull/18514>`_
|
||||
* Add Tool-Centric APIs to the Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#18524 <https://github.com/galaxyproject/galaxy/pull/18524>`_
|
||||
* Improvements to Tool Test Parsing by `@jmchilton <https://github.com/jmchilton>`_ in `#18560 <https://github.com/galaxyproject/galaxy/pull/18560>`_
|
||||
* Group tool templating exceptions in sentry by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18570 <https://github.com/galaxyproject/galaxy/pull/18570>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18578 <https://github.com/galaxyproject/galaxy/pull/18578>`_
|
||||
* Record container id and type in core job metrics by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18579 <https://github.com/galaxyproject/galaxy/pull/18579>`_
|
||||
* Rev pinned gxformat2. by `@jmchilton <https://github.com/jmchilton>`_ in `#18624 <https://github.com/galaxyproject/galaxy/pull/18624>`_
|
||||
* Better Typing for Tool Execution Plumbing by `@jmchilton <https://github.com/jmchilton>`_ in `#18626 <https://github.com/galaxyproject/galaxy/pull/18626>`_
|
||||
* Remove unused functions in dataset managers by `@jmchilton <https://github.com/jmchilton>`_ in `#18631 <https://github.com/galaxyproject/galaxy/pull/18631>`_
|
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* Parameter Model Improvements by `@jmchilton <https://github.com/jmchilton>`_ in `#18641 <https://github.com/galaxyproject/galaxy/pull/18641>`_
|
||||
* Parse stored config details to script-based visualizations by `@guerler <https://github.com/guerler>`_ in `#18651 <https://github.com/galaxyproject/galaxy/pull/18651>`_
|
||||
* Another round of parameter model improvements. by `@jmchilton <https://github.com/jmchilton>`_ in `#18673 <https://github.com/galaxyproject/galaxy/pull/18673>`_
|
||||
* Allow access to invocation via shared or published history by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18707 <https://github.com/galaxyproject/galaxy/pull/18707>`_
|
||||
* Allow specifying multi-select workflow parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18715 <https://github.com/galaxyproject/galaxy/pull/18715>`_
|
||||
* Improvements to help terms & tool help. by `@jmchilton <https://github.com/jmchilton>`_ in `#18722 <https://github.com/galaxyproject/galaxy/pull/18722>`_
|
||||
* Add a retry when deleting a k8s job by `@afgane <https://github.com/afgane>`_ in `#18744 <https://github.com/galaxyproject/galaxy/pull/18744>`_
|
||||
* More typing, docs, and decomposition around tool execution by `@jmchilton <https://github.com/jmchilton>`_ in `#18758 <https://github.com/galaxyproject/galaxy/pull/18758>`_
|
||||
* Add Workflow Title and Annotation sections by `@hujambo-dunia <https://github.com/hujambo-dunia>`_ in `#18762 <https://github.com/galaxyproject/galaxy/pull/18762>`_
|
||||
* Refactor ``LibraryDatasetsManager`` and fix type annotation issue by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18773 <https://github.com/galaxyproject/galaxy/pull/18773>`_
|
||||
* Backend handling of setting user-role, user-group, and group-role associations by `@jdavcs <https://github.com/jdavcs>`_ in `#18777 <https://github.com/galaxyproject/galaxy/pull/18777>`_
|
||||
* Allow using tracks and groups in visualization xml by `@guerler <https://github.com/guerler>`_ in `#18779 <https://github.com/galaxyproject/galaxy/pull/18779>`_
|
||||
* Workflow Landing Requests by `@jmchilton <https://github.com/jmchilton>`_ in `#18807 <https://github.com/galaxyproject/galaxy/pull/18807>`_
|
||||
* Update Mypy to 1.11.2 and fix new signature override errors by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18811 <https://github.com/galaxyproject/galaxy/pull/18811>`_
|
||||
* Migrate Library Contents API to FastAPI by `@arash77 <https://github.com/arash77>`_ in `#18838 <https://github.com/galaxyproject/galaxy/pull/18838>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18864 <https://github.com/galaxyproject/galaxy/pull/18864>`_
|
||||
* Implement Pydantic model for workflow test format. by `@jmchilton <https://github.com/jmchilton>`_ in `#18884 <https://github.com/galaxyproject/galaxy/pull/18884>`_
|
||||
* Remove some unused dynamic drill down options. by `@jmchilton <https://github.com/jmchilton>`_ in `#18892 <https://github.com/galaxyproject/galaxy/pull/18892>`_
|
||||
* Enable ``ignore-without-code`` mypy error code by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18898 <https://github.com/galaxyproject/galaxy/pull/18898>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18904 <https://github.com/galaxyproject/galaxy/pull/18904>`_
|
||||
* Type annotations and fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18911 <https://github.com/galaxyproject/galaxy/pull/18911>`_
|
||||
* Add filter null collection operation tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18928 <https://github.com/galaxyproject/galaxy/pull/18928>`_
|
||||
* Remove outdated fimo wrapper and galaxy-sequence-utils dependency by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18937 <https://github.com/galaxyproject/galaxy/pull/18937>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18943 <https://github.com/galaxyproject/galaxy/pull/18943>`_
|
||||
* Allow to overwrite `real_system_username` per destination by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18945 <https://github.com/galaxyproject/galaxy/pull/18945>`_
|
||||
* Assert that `data_column` parameters have a valid `data_ref` by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18949 <https://github.com/galaxyproject/galaxy/pull/18949>`_
|
||||
* Decouple user email from role name by `@jdavcs <https://github.com/jdavcs>`_ in `#18966 <https://github.com/galaxyproject/galaxy/pull/18966>`_
|
||||
* Workflow landing improvements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18979 <https://github.com/galaxyproject/galaxy/pull/18979>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18982 <https://github.com/galaxyproject/galaxy/pull/18982>`_
|
||||
* Allow recovering a normalized version of workflow request state from API by `@jmchilton <https://github.com/jmchilton>`_ in `#18985 <https://github.com/galaxyproject/galaxy/pull/18985>`_
|
||||
* Enhance relabel_from_file to work with any column pair in mapping file by `@wm75 <https://github.com/wm75>`_ in `#19022 <https://github.com/galaxyproject/galaxy/pull/19022>`_
|
||||
* A variety of improvements around tool parameter modeling (second try) by `@jmchilton <https://github.com/jmchilton>`_ in `#19027 <https://github.com/galaxyproject/galaxy/pull/19027>`_
|
||||
* Better logging around tool loading by `@jmchilton <https://github.com/jmchilton>`_ in `#19029 <https://github.com/galaxyproject/galaxy/pull/19029>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19031 <https://github.com/galaxyproject/galaxy/pull/19031>`_
|
||||
* Silence the quota manager for updates by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19046 <https://github.com/galaxyproject/galaxy/pull/19046>`_
|
||||
* Add job metrics per invocation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19048 <https://github.com/galaxyproject/galaxy/pull/19048>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19062 <https://github.com/galaxyproject/galaxy/pull/19062>`_
|
||||
* Annotate ``DatasetAssociationManager`` as generic type by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19063 <https://github.com/galaxyproject/galaxy/pull/19063>`_
|
||||
* Move TRS import into WorkflowContentManager by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19070 <https://github.com/galaxyproject/galaxy/pull/19070>`_
|
||||
* Replace poetry with uv by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19075 <https://github.com/galaxyproject/galaxy/pull/19075>`_
|
||||
* Allow deferred datasets to behave as URIs by `@davelopez <https://github.com/davelopez>`_ in `#19077 <https://github.com/galaxyproject/galaxy/pull/19077>`_
|
||||
* Implement workflow parameter validators. by `@jmchilton <https://github.com/jmchilton>`_ in `#19092 <https://github.com/galaxyproject/galaxy/pull/19092>`_
|
||||
* Allow directory_uri workflow parameters. by `@jmchilton <https://github.com/jmchilton>`_ in `#19093 <https://github.com/galaxyproject/galaxy/pull/19093>`_
|
||||
* Better cleanup of sharing roles on user purge by `@jdavcs <https://github.com/jdavcs>`_ in `#19096 <https://github.com/galaxyproject/galaxy/pull/19096>`_
|
||||
* Support deferred datasets in visualizations by `@davelopez <https://github.com/davelopez>`_ in `#19097 <https://github.com/galaxyproject/galaxy/pull/19097>`_
|
||||
* uv: Do not recalculate dependencies when exporting by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19099 <https://github.com/galaxyproject/galaxy/pull/19099>`_
|
||||
* Access public history in job cache / job search by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19108 <https://github.com/galaxyproject/galaxy/pull/19108>`_
|
||||
* Test hash validation also for upload by path by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19109 <https://github.com/galaxyproject/galaxy/pull/19109>`_
|
||||
* Always validate hashes when provided by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19110 <https://github.com/galaxyproject/galaxy/pull/19110>`_
|
||||
* Add type annotations to ``JobRunnerMapper`` and related code by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19115 <https://github.com/galaxyproject/galaxy/pull/19115>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19123 <https://github.com/galaxyproject/galaxy/pull/19123>`_
|
||||
* Allow a posix file source to prefer linking. by `@jmchilton <https://github.com/jmchilton>`_ in `#19132 <https://github.com/galaxyproject/galaxy/pull/19132>`_
|
||||
* Remove OpenLayers legacy files and add SVG logo by `@guerler <https://github.com/guerler>`_ in `#19135 <https://github.com/galaxyproject/galaxy/pull/19135>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19149 <https://github.com/galaxyproject/galaxy/pull/19149>`_
|
||||
* Fix default value handling for parameters connected to required parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19219 <https://github.com/galaxyproject/galaxy/pull/19219>`_
|
||||
* Workflow Inputs Activity by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19252 <https://github.com/galaxyproject/galaxy/pull/19252>`_
|
||||
|
||||
=============
|
||||
Other changes
|
||||
=============
|
||||
|
||||
* Fix workflow invocation accessibility check by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18746 <https://github.com/galaxyproject/galaxy/pull/18746>`_
|
||||
* Fix destentation typo by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19140 <https://github.com/galaxyproject/galaxy/pull/19140>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
@@ -23,7 +165,7 @@ Bug fixes
|
||||
* Fix dropped when_expression on step upgrade by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18446 <https://github.com/galaxyproject/galaxy/pull/18446>`_
|
||||
* Improve workflow-related exception reporting by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18447 <https://github.com/galaxyproject/galaxy/pull/18447>`_
|
||||
* Fix subwofklow tags serialization type by `@arash77 <https://github.com/arash77>`_ in `#18456 <https://github.com/galaxyproject/galaxy/pull/18456>`_
|
||||
* by `@laperlej <https://github.com/laperlej>`_ in `#18459 <https://github.com/galaxyproject/galaxy/pull/18459>`_
|
||||
* by `@laperlej <https://github.com/laperlej>`_ in `#18459 <https://github.com/galaxyproject/galaxy/pull/18459>`_
|
||||
* Add input extra files to `get_input_fnames` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18462 <https://github.com/galaxyproject/galaxy/pull/18462>`_
|
||||
* Return generic message for password reset email by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#18479 <https://github.com/galaxyproject/galaxy/pull/18479>`_
|
||||
* Increase API robustness to invalid requests, improve compressed data serving by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18494 <https://github.com/galaxyproject/galaxy/pull/18494>`_
|
||||
|
||||
@@ -9,6 +9,12 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
No recorded changes since last release
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,47 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Fix loading error for built in tool `sift` by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18357 <https://github.com/galaxyproject/galaxy/pull/18357>`_
|
||||
* Add gtf to auto_compressed_types by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19175 <https://github.com/galaxyproject/galaxy/pull/19175>`_
|
||||
* Partial backport of #19331 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19342 <https://github.com/galaxyproject/galaxy/pull/19342>`_
|
||||
* Fix to only show ChatGXY when available. by `@dannon <https://github.com/dannon>`_ in `#19389 <https://github.com/galaxyproject/galaxy/pull/19389>`_
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Experimental galactic wizard by `@dannon <https://github.com/dannon>`_ in `#15860 <https://github.com/galaxyproject/galaxy/pull/15860>`_
|
||||
* Improve usability of Directory datatype by `@wm75 <https://github.com/wm75>`_ in `#17614 <https://github.com/galaxyproject/galaxy/pull/17614>`_
|
||||
* Add pod5 datatype by `@TomHarrop <https://github.com/TomHarrop>`_ in `#18419 <https://github.com/galaxyproject/galaxy/pull/18419>`_
|
||||
* Add onedata templates by `@bwalkowi <https://github.com/bwalkowi>`_ in `#18457 <https://github.com/galaxyproject/galaxy/pull/18457>`_
|
||||
* Support high-availability setups for the interactive tools proxy by `@kysrpex <https://github.com/kysrpex>`_ in `#18481 <https://github.com/galaxyproject/galaxy/pull/18481>`_
|
||||
* Minor config documentation enhancements by `@bgruening <https://github.com/bgruening>`_ in `#18499 <https://github.com/galaxyproject/galaxy/pull/18499>`_
|
||||
* Add Tool-Centric APIs to the Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#18524 <https://github.com/galaxyproject/galaxy/pull/18524>`_
|
||||
* Bring your own file sources: Add the WebDAV template and configuration by `@sanjaysrikakulam <https://github.com/sanjaysrikakulam>`_ in `#18598 <https://github.com/galaxyproject/galaxy/pull/18598>`_
|
||||
* Add BlobToolkit to the list of interactive tools by `@Delphine-L <https://github.com/Delphine-L>`_ in `#18630 <https://github.com/galaxyproject/galaxy/pull/18630>`_
|
||||
* Remove `defaults` channel for conda usage by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18757 <https://github.com/galaxyproject/galaxy/pull/18757>`_
|
||||
* Workflow Landing Requests by `@jmchilton <https://github.com/jmchilton>`_ in `#18807 <https://github.com/galaxyproject/galaxy/pull/18807>`_
|
||||
* Jupyter Interactive Tool 1.0.1/24.07 by `@natefoo <https://github.com/natefoo>`_ in `#18861 <https://github.com/galaxyproject/galaxy/pull/18861>`_
|
||||
* Allow setting a few global defaults for file source plugin types. by `@jmchilton <https://github.com/jmchilton>`_ in `#18909 <https://github.com/galaxyproject/galaxy/pull/18909>`_
|
||||
* Add filter null collection operation tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18928 <https://github.com/galaxyproject/galaxy/pull/18928>`_
|
||||
* Add hint to the tool schema about runtime conditional changes by `@martenson <https://github.com/martenson>`_ in `#18996 <https://github.com/galaxyproject/galaxy/pull/18996>`_
|
||||
* Irods ssl connection by `@pauldg <https://github.com/pauldg>`_ in `#19014 <https://github.com/galaxyproject/galaxy/pull/19014>`_
|
||||
* Add some Zarr-based datatypes by `@davelopez <https://github.com/davelopez>`_ in `#19040 <https://github.com/galaxyproject/galaxy/pull/19040>`_
|
||||
* Run installed Galaxy with no config and a simplified entry point by `@natefoo <https://github.com/natefoo>`_ in `#19050 <https://github.com/galaxyproject/galaxy/pull/19050>`_
|
||||
* Add XML based `vtk` datatype by `@tStehling <https://github.com/tStehling>`_ in `#19104 <https://github.com/galaxyproject/galaxy/pull/19104>`_
|
||||
* Allow a posix file source to prefer linking. by `@jmchilton <https://github.com/jmchilton>`_ in `#19132 <https://github.com/galaxyproject/galaxy/pull/19132>`_
|
||||
* Add bcsp datatype by `@SantaMcCloud <https://github.com/SantaMcCloud>`_ in `#19365 <https://github.com/galaxyproject/galaxy/pull/19365>`_
|
||||
* add MuData as subclass of H5 by `@pavanvidem <https://github.com/pavanvidem>`_ in `#19416 <https://github.com/galaxyproject/galaxy/pull/19416>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,85 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Drop "Send to cloud" tool and associated cloudauthz code by `@jdavcs <https://github.com/jdavcs>`_ in `#18196 <https://github.com/galaxyproject/galaxy/pull/18196>`_
|
||||
* Raise Message Exception when displaying binary data by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18503 <https://github.com/galaxyproject/galaxy/pull/18503>`_
|
||||
* Fixes for errors reported by mypy 1.11.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18608 <https://github.com/galaxyproject/galaxy/pull/18608>`_
|
||||
* Fix new flake8-bugbear B039 and mypy type-var errors by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18755 <https://github.com/galaxyproject/galaxy/pull/18755>`_
|
||||
* Fix migration data fixes tests by `@jdavcs <https://github.com/jdavcs>`_ in `#18885 <https://github.com/galaxyproject/galaxy/pull/18885>`_
|
||||
* Fix backend role sharing bug by `@jdavcs <https://github.com/jdavcs>`_ in `#18942 <https://github.com/galaxyproject/galaxy/pull/18942>`_
|
||||
* Add merge migration to merge 2 heads by `@jdavcs <https://github.com/jdavcs>`_ in `#19163 <https://github.com/galaxyproject/galaxy/pull/19163>`_
|
||||
* Record implicitly converted dataset as input dataset by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19301 <https://github.com/galaxyproject/galaxy/pull/19301>`_
|
||||
* Fix quota usage with user object stores by `@davelopez <https://github.com/davelopez>`_ in `#19323 <https://github.com/galaxyproject/galaxy/pull/19323>`_
|
||||
* Fix workflows with optional non-default parameter input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19332 <https://github.com/galaxyproject/galaxy/pull/19332>`_
|
||||
* Fix importing shared workflows with deeply nested subworkflows by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19335 <https://github.com/galaxyproject/galaxy/pull/19335>`_
|
||||
* Backport fix from #19396 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19399 <https://github.com/galaxyproject/galaxy/pull/19399>`_
|
||||
* Prevent cycling through failing conversion jobs in trackster by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19494 <https://github.com/galaxyproject/galaxy/pull/19494>`_
|
||||
* Fix extracting workflows from purged and deleted histories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19525 <https://github.com/galaxyproject/galaxy/pull/19525>`_
|
||||
* Fix error message when subworkflow input connection missing by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19526 <https://github.com/galaxyproject/galaxy/pull/19526>`_
|
||||
* Fix admin cancel job message not being displayed to the user by `@davelopez <https://github.com/davelopez>`_ in `#19537 <https://github.com/galaxyproject/galaxy/pull/19537>`_
|
||||
* Add tool_id index on job table by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19543 <https://github.com/galaxyproject/galaxy/pull/19543>`_
|
||||
* Update 24.2 db revision tags by `@jdavcs <https://github.com/jdavcs>`_ in `#19550 <https://github.com/galaxyproject/galaxy/pull/19550>`_
|
||||
* Provide guidance in case of deadlock during db migration by `@jdavcs <https://github.com/jdavcs>`_ in `#19551 <https://github.com/galaxyproject/galaxy/pull/19551>`_
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Experimental galactic wizard by `@dannon <https://github.com/dannon>`_ in `#15860 <https://github.com/galaxyproject/galaxy/pull/15860>`_
|
||||
* Improve usability of Directory datatype by `@wm75 <https://github.com/wm75>`_ in `#17614 <https://github.com/galaxyproject/galaxy/pull/17614>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18226 <https://github.com/galaxyproject/galaxy/pull/18226>`_
|
||||
* Allow OAuth 2.0 user defined file sources (w/Dropbox integration) by `@jmchilton <https://github.com/jmchilton>`_ in `#18272 <https://github.com/galaxyproject/galaxy/pull/18272>`_
|
||||
* More data access tests, some refactoring and cleanup by `@jdavcs <https://github.com/jdavcs>`_ in `#18312 <https://github.com/galaxyproject/galaxy/pull/18312>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18406 <https://github.com/galaxyproject/galaxy/pull/18406>`_
|
||||
* Add pod5 datatype by `@TomHarrop <https://github.com/TomHarrop>`_ in `#18419 <https://github.com/galaxyproject/galaxy/pull/18419>`_
|
||||
* Prepare for NumPy 2.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18422 <https://github.com/galaxyproject/galaxy/pull/18422>`_
|
||||
* Add unique constraints to the email and username fields in the galaxy_user table by `@jdavcs <https://github.com/jdavcs>`_ in `#18493 <https://github.com/galaxyproject/galaxy/pull/18493>`_
|
||||
* Improvements for K8S deployment (especially ITs) by `@almahmoud <https://github.com/almahmoud>`_ in `#18514 <https://github.com/galaxyproject/galaxy/pull/18514>`_
|
||||
* Refactor ``LibraryDatasetsManager`` and fix type annotation issue by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18773 <https://github.com/galaxyproject/galaxy/pull/18773>`_
|
||||
* Handle compressed content in dataset preview for all sequence classes by `@PlushZ <https://github.com/PlushZ>`_ in `#18776 <https://github.com/galaxyproject/galaxy/pull/18776>`_
|
||||
* Backend handling of setting user-role, user-group, and group-role associations by `@jdavcs <https://github.com/jdavcs>`_ in `#18777 <https://github.com/galaxyproject/galaxy/pull/18777>`_
|
||||
* Workflow Landing Requests by `@jmchilton <https://github.com/jmchilton>`_ in `#18807 <https://github.com/galaxyproject/galaxy/pull/18807>`_
|
||||
* Update Mypy to 1.11.2 and fix new signature override errors by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18811 <https://github.com/galaxyproject/galaxy/pull/18811>`_
|
||||
* Refactor migration testing setup code by `@jdavcs <https://github.com/jdavcs>`_ in `#18886 <https://github.com/galaxyproject/galaxy/pull/18886>`_
|
||||
* Allow setting a few global defaults for file source plugin types. by `@jmchilton <https://github.com/jmchilton>`_ in `#18909 <https://github.com/galaxyproject/galaxy/pull/18909>`_
|
||||
* Type annotations and fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18911 <https://github.com/galaxyproject/galaxy/pull/18911>`_
|
||||
* Add filter null collection operation tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18928 <https://github.com/galaxyproject/galaxy/pull/18928>`_
|
||||
* Fix extra files path type hint by `@davelopez <https://github.com/davelopez>`_ in `#18958 <https://github.com/galaxyproject/galaxy/pull/18958>`_
|
||||
* Decouple user email from role name by `@jdavcs <https://github.com/jdavcs>`_ in `#18966 <https://github.com/galaxyproject/galaxy/pull/18966>`_
|
||||
* Optimize to_history_dataset_association in create_datasets_from_library_folder by `@arash77 <https://github.com/arash77>`_ in `#18970 <https://github.com/galaxyproject/galaxy/pull/18970>`_
|
||||
* Workflow landing improvements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18979 <https://github.com/galaxyproject/galaxy/pull/18979>`_
|
||||
* Allow recovering a normalized version of workflow request state from API by `@jmchilton <https://github.com/jmchilton>`_ in `#18985 <https://github.com/galaxyproject/galaxy/pull/18985>`_
|
||||
* Add some Zarr-based datatypes by `@davelopez <https://github.com/davelopez>`_ in `#19040 <https://github.com/galaxyproject/galaxy/pull/19040>`_
|
||||
* Run installed Galaxy with no config and a simplified entry point by `@natefoo <https://github.com/natefoo>`_ in `#19050 <https://github.com/galaxyproject/galaxy/pull/19050>`_
|
||||
* Annotate ``DatasetAssociationManager`` as generic type by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19063 <https://github.com/galaxyproject/galaxy/pull/19063>`_
|
||||
* Move TRS import into WorkflowContentManager by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19070 <https://github.com/galaxyproject/galaxy/pull/19070>`_
|
||||
* Allow deferred datasets to behave as URIs by `@davelopez <https://github.com/davelopez>`_ in `#19077 <https://github.com/galaxyproject/galaxy/pull/19077>`_
|
||||
* Better cleanup of sharing roles on user purge by `@jdavcs <https://github.com/jdavcs>`_ in `#19096 <https://github.com/galaxyproject/galaxy/pull/19096>`_
|
||||
* Add XML based `vtk` datatype by `@tStehling <https://github.com/tStehling>`_ in `#19104 <https://github.com/galaxyproject/galaxy/pull/19104>`_
|
||||
* Access public history in job cache / job search by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19108 <https://github.com/galaxyproject/galaxy/pull/19108>`_
|
||||
* Always validate hashes when provided by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19110 <https://github.com/galaxyproject/galaxy/pull/19110>`_
|
||||
* Enable specifying dataset hash in test jobs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19113 <https://github.com/galaxyproject/galaxy/pull/19113>`_
|
||||
* Enhance UTF-8 support for filename handling in downloads by `@arash77 <https://github.com/arash77>`_ in `#19161 <https://github.com/galaxyproject/galaxy/pull/19161>`_
|
||||
* Backport of Workflow Editor Activity Bar by `@dannon <https://github.com/dannon>`_ in `#19212 <https://github.com/galaxyproject/galaxy/pull/19212>`_
|
||||
* Fix default value handling for parameters connected to required parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19219 <https://github.com/galaxyproject/galaxy/pull/19219>`_
|
||||
|
||||
=============
|
||||
Other changes
|
||||
=============
|
||||
|
||||
* Merge 24.1 by `@jdavcs <https://github.com/jdavcs>`_ in `#18386 <https://github.com/galaxyproject/galaxy/pull/18386>`_
|
||||
* Format dev to fix linting. by `@jmchilton <https://github.com/jmchilton>`_ in `#18860 <https://github.com/galaxyproject/galaxy/pull/18860>`_
|
||||
* Add 24.2 migration tags by `@jdavcs <https://github.com/jdavcs>`_ in `#19169 <https://github.com/galaxyproject/galaxy/pull/19169>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,24 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Allow OAuth 2.0 user defined file sources (w/Dropbox integration) by `@jmchilton <https://github.com/jmchilton>`_ in `#18272 <https://github.com/galaxyproject/galaxy/pull/18272>`_
|
||||
* Add onedata templates by `@bwalkowi <https://github.com/bwalkowi>`_ in `#18457 <https://github.com/galaxyproject/galaxy/pull/18457>`_
|
||||
* Add missing version in the file sources and object store templates by `@sanjaysrikakulam <https://github.com/sanjaysrikakulam>`_ in `#18497 <https://github.com/galaxyproject/galaxy/pull/18497>`_
|
||||
* Add a new version of the production s3fs file source template with the writable configuration variable added by `@sanjaysrikakulam <https://github.com/sanjaysrikakulam>`_ in `#18575 <https://github.com/galaxyproject/galaxy/pull/18575>`_
|
||||
* Bring your own file sources: Add the WebDAV template and configuration by `@sanjaysrikakulam <https://github.com/sanjaysrikakulam>`_ in `#18598 <https://github.com/galaxyproject/galaxy/pull/18598>`_
|
||||
* Allow setting a few global defaults for file source plugin types. by `@jmchilton <https://github.com/jmchilton>`_ in `#18909 <https://github.com/galaxyproject/galaxy/pull/18909>`_
|
||||
* Type annotations and fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18911 <https://github.com/galaxyproject/galaxy/pull/18911>`_
|
||||
* Allow a posix file source to prefer linking. by `@jmchilton <https://github.com/jmchilton>`_ in `#19132 <https://github.com/galaxyproject/galaxy/pull/19132>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,17 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Fixes for errors reported by mypy 1.11.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18608 <https://github.com/galaxyproject/galaxy/pull/18608>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,17 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Record container id and type in core job metrics by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18579 <https://github.com/galaxyproject/galaxy/pull/18579>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,12 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
No recorded changes since last release
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,30 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Fixes for errors reported by mypy 1.11.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18608 <https://github.com/galaxyproject/galaxy/pull/18608>`_
|
||||
* Fix job directory not being cleaned up by `@davelopez <https://github.com/davelopez>`_ in `#18997 <https://github.com/galaxyproject/galaxy/pull/18997>`_
|
||||
* Fix quota usage with user object stores by `@davelopez <https://github.com/davelopez>`_ in `#19323 <https://github.com/galaxyproject/galaxy/pull/19323>`_
|
||||
* Fix object not found handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19468 <https://github.com/galaxyproject/galaxy/pull/19468>`_
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Allow OAuth 2.0 user defined file sources (w/Dropbox integration) by `@jmchilton <https://github.com/jmchilton>`_ in `#18272 <https://github.com/galaxyproject/galaxy/pull/18272>`_
|
||||
* Add onedata templates by `@bwalkowi <https://github.com/bwalkowi>`_ in `#18457 <https://github.com/galaxyproject/galaxy/pull/18457>`_
|
||||
* Add missing version in the file sources and object store templates by `@sanjaysrikakulam <https://github.com/sanjaysrikakulam>`_ in `#18497 <https://github.com/galaxyproject/galaxy/pull/18497>`_
|
||||
* Add a retry when deleting a k8s job by `@afgane <https://github.com/afgane>`_ in `#18744 <https://github.com/galaxyproject/galaxy/pull/18744>`_
|
||||
* Irods ssl connection by `@pauldg <https://github.com/pauldg>`_ in `#19014 <https://github.com/galaxyproject/galaxy/pull/19014>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,48 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Drop "Send to cloud" tool and associated cloudauthz code by `@jdavcs <https://github.com/jdavcs>`_ in `#18196 <https://github.com/galaxyproject/galaxy/pull/18196>`_
|
||||
* Fix issue with generating slug for sharing by `@arash77 <https://github.com/arash77>`_ in `#18986 <https://github.com/galaxyproject/galaxy/pull/18986>`_
|
||||
* Fix invocation metrics usability by providing job context. by `@jmchilton <https://github.com/jmchilton>`_ in `#19279 <https://github.com/galaxyproject/galaxy/pull/19279>`_
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Experimental galactic wizard by `@dannon <https://github.com/dannon>`_ in `#15860 <https://github.com/galaxyproject/galaxy/pull/15860>`_
|
||||
* Feature - stdout live reporting by `@gecage952 <https://github.com/gecage952>`_ in `#16975 <https://github.com/galaxyproject/galaxy/pull/16975>`_
|
||||
* Add errors fast api by `@arash77 <https://github.com/arash77>`_ in `#18093 <https://github.com/galaxyproject/galaxy/pull/18093>`_
|
||||
* Allow OAuth 2.0 user defined file sources (w/Dropbox integration) by `@jmchilton <https://github.com/jmchilton>`_ in `#18272 <https://github.com/galaxyproject/galaxy/pull/18272>`_
|
||||
* Improve datasets permissions API schema typing by `@davelopez <https://github.com/davelopez>`_ in `#18563 <https://github.com/galaxyproject/galaxy/pull/18563>`_
|
||||
* Improve typing for archived histories API schema by `@davelopez <https://github.com/davelopez>`_ in `#18586 <https://github.com/galaxyproject/galaxy/pull/18586>`_
|
||||
* Tighten user notification API response types by `@davelopez <https://github.com/davelopez>`_ in `#18599 <https://github.com/galaxyproject/galaxy/pull/18599>`_
|
||||
* Improve update user API payload schema by `@davelopez <https://github.com/davelopez>`_ in `#18602 <https://github.com/galaxyproject/galaxy/pull/18602>`_
|
||||
* Improve update history payload schema by `@davelopez <https://github.com/davelopez>`_ in `#18618 <https://github.com/galaxyproject/galaxy/pull/18618>`_
|
||||
* Improve types around User in schema and client by `@davelopez <https://github.com/davelopez>`_ in `#18645 <https://github.com/galaxyproject/galaxy/pull/18645>`_
|
||||
* Improve accept header API schema by `@davelopez <https://github.com/davelopez>`_ in `#18668 <https://github.com/galaxyproject/galaxy/pull/18668>`_
|
||||
* Migrate Visualizations API to FastAPI by `@arash77 <https://github.com/arash77>`_ in `#18721 <https://github.com/galaxyproject/galaxy/pull/18721>`_
|
||||
* Backend handling of setting user-role, user-group, and group-role associations by `@jdavcs <https://github.com/jdavcs>`_ in `#18777 <https://github.com/galaxyproject/galaxy/pull/18777>`_
|
||||
* Update Visualization FastAPI by `@arash77 <https://github.com/arash77>`_ in `#18792 <https://github.com/galaxyproject/galaxy/pull/18792>`_
|
||||
* Workflow Landing Requests by `@jmchilton <https://github.com/jmchilton>`_ in `#18807 <https://github.com/galaxyproject/galaxy/pull/18807>`_
|
||||
* Migrate Library Contents API to FastAPI by `@arash77 <https://github.com/arash77>`_ in `#18838 <https://github.com/galaxyproject/galaxy/pull/18838>`_
|
||||
* Enable ``ignore-without-code`` mypy error code by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18898 <https://github.com/galaxyproject/galaxy/pull/18898>`_
|
||||
* Decouple user email from role name by `@jdavcs <https://github.com/jdavcs>`_ in `#18966 <https://github.com/galaxyproject/galaxy/pull/18966>`_
|
||||
* Workflow landing improvements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18979 <https://github.com/galaxyproject/galaxy/pull/18979>`_
|
||||
* Allow recovering a normalized version of workflow request state from API by `@jmchilton <https://github.com/jmchilton>`_ in `#18985 <https://github.com/galaxyproject/galaxy/pull/18985>`_
|
||||
* Add job metrics per invocation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19048 <https://github.com/galaxyproject/galaxy/pull/19048>`_
|
||||
* Implement workflow parameter validators. by `@jmchilton <https://github.com/jmchilton>`_ in `#19092 <https://github.com/galaxyproject/galaxy/pull/19092>`_
|
||||
* Access public history in job cache / job search by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19108 <https://github.com/galaxyproject/galaxy/pull/19108>`_
|
||||
* Always validate hashes when provided by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19110 <https://github.com/galaxyproject/galaxy/pull/19110>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,34 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Fixes for errors reported by mypy 1.11.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18608 <https://github.com/galaxyproject/galaxy/pull/18608>`_
|
||||
* Fix transiently failing selenium tooltip issues by `@jmchilton <https://github.com/jmchilton>`_ in `#18847 <https://github.com/galaxyproject/galaxy/pull/18847>`_
|
||||
* release testing - UI tests for new workflow parameters by `@jmchilton <https://github.com/jmchilton>`_ in `#19182 <https://github.com/galaxyproject/galaxy/pull/19182>`_
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Masthead Revision by `@guerler <https://github.com/guerler>`_ in `#17927 <https://github.com/galaxyproject/galaxy/pull/17927>`_
|
||||
* Moves Libraries from Masthead to Activity Bar by `@guerler <https://github.com/guerler>`_ in `#18468 <https://github.com/galaxyproject/galaxy/pull/18468>`_
|
||||
* Replace History Dataset Picker in Library Folder by `@itisAliRH <https://github.com/itisAliRH>`_ in `#18518 <https://github.com/galaxyproject/galaxy/pull/18518>`_
|
||||
* Workflow Invocation view improvements by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#18615 <https://github.com/galaxyproject/galaxy/pull/18615>`_
|
||||
* Guide users to collection builders by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#18857 <https://github.com/galaxyproject/galaxy/pull/18857>`_
|
||||
* Workflow license and creator edit keyboard access by `@itisAliRH <https://github.com/itisAliRH>`_ in `#18936 <https://github.com/galaxyproject/galaxy/pull/18936>`_
|
||||
* Workflow landing improvements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18979 <https://github.com/galaxyproject/galaxy/pull/18979>`_
|
||||
* Backport of Workflow Editor Activity Bar by `@dannon <https://github.com/dannon>`_ in `#19212 <https://github.com/galaxyproject/galaxy/pull/19212>`_
|
||||
* Various list of pairs builder usability fixes. by `@jmchilton <https://github.com/jmchilton>`_ in `#19248 <https://github.com/galaxyproject/galaxy/pull/19248>`_
|
||||
* Workflow Inputs Activity by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19252 <https://github.com/galaxyproject/galaxy/pull/19252>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,65 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Fix tag processing in library upload by `@davelopez <https://github.com/davelopez>`_ in `#18714 <https://github.com/galaxyproject/galaxy/pull/18714>`_
|
||||
* Fix issue with generating slug for sharing by `@arash77 <https://github.com/arash77>`_ in `#18986 <https://github.com/galaxyproject/galaxy/pull/18986>`_
|
||||
* Fix numerous issues with tool input format "21.01" by `@jmchilton <https://github.com/jmchilton>`_ in `#19030 <https://github.com/galaxyproject/galaxy/pull/19030>`_
|
||||
* Record implicitly converted dataset as input dataset by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19301 <https://github.com/galaxyproject/galaxy/pull/19301>`_
|
||||
* Expression tool format source backport by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19466 <https://github.com/galaxyproject/galaxy/pull/19466>`_
|
||||
* Fail with error message when submitting invalid request by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19489 <https://github.com/galaxyproject/galaxy/pull/19489>`_
|
||||
* Fix deleting lddas in batch by `@davelopez <https://github.com/davelopez>`_ in `#19506 <https://github.com/galaxyproject/galaxy/pull/19506>`_
|
||||
* Fix ``test_storage_show`` API test by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19522 <https://github.com/galaxyproject/galaxy/pull/19522>`_
|
||||
* Fix error message when subworkflow input connection missing by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19526 <https://github.com/galaxyproject/galaxy/pull/19526>`_
|
||||
* Fix admin cancel job message not being displayed to the user by `@davelopez <https://github.com/davelopez>`_ in `#19537 <https://github.com/galaxyproject/galaxy/pull/19537>`_
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Improve usability of Directory datatype by `@wm75 <https://github.com/wm75>`_ in `#17614 <https://github.com/galaxyproject/galaxy/pull/17614>`_
|
||||
* Implement Declarative Testing for Workflow Behaviors by `@jmchilton <https://github.com/jmchilton>`_ in `#18542 <https://github.com/galaxyproject/galaxy/pull/18542>`_
|
||||
* More tool test typing. by `@jmchilton <https://github.com/jmchilton>`_ in `#18590 <https://github.com/galaxyproject/galaxy/pull/18590>`_
|
||||
* Better Typing for Tool Execution Plumbing by `@jmchilton <https://github.com/jmchilton>`_ in `#18626 <https://github.com/galaxyproject/galaxy/pull/18626>`_
|
||||
* Parameter Model Improvements by `@jmchilton <https://github.com/jmchilton>`_ in `#18641 <https://github.com/galaxyproject/galaxy/pull/18641>`_
|
||||
* Another round of parameter model improvements. by `@jmchilton <https://github.com/jmchilton>`_ in `#18673 <https://github.com/galaxyproject/galaxy/pull/18673>`_
|
||||
* Allow access to invocation via shared or published history by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18707 <https://github.com/galaxyproject/galaxy/pull/18707>`_
|
||||
* Migrate Visualizations API to FastAPI by `@arash77 <https://github.com/arash77>`_ in `#18721 <https://github.com/galaxyproject/galaxy/pull/18721>`_
|
||||
* Refactor ``LibraryDatasetsManager`` and fix type annotation issue by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18773 <https://github.com/galaxyproject/galaxy/pull/18773>`_
|
||||
* Backend handling of setting user-role, user-group, and group-role associations by `@jdavcs <https://github.com/jdavcs>`_ in `#18777 <https://github.com/galaxyproject/galaxy/pull/18777>`_
|
||||
* Workflow Landing Requests by `@jmchilton <https://github.com/jmchilton>`_ in `#18807 <https://github.com/galaxyproject/galaxy/pull/18807>`_
|
||||
* Migrate Library Contents API to FastAPI by `@arash77 <https://github.com/arash77>`_ in `#18838 <https://github.com/galaxyproject/galaxy/pull/18838>`_
|
||||
* Implement Pydantic model for workflow test format. by `@jmchilton <https://github.com/jmchilton>`_ in `#18884 <https://github.com/galaxyproject/galaxy/pull/18884>`_
|
||||
* Decouple user email from role name by `@jdavcs <https://github.com/jdavcs>`_ in `#18966 <https://github.com/galaxyproject/galaxy/pull/18966>`_
|
||||
* More concise, readable tool execution testing. by `@jmchilton <https://github.com/jmchilton>`_ in `#18977 <https://github.com/galaxyproject/galaxy/pull/18977>`_
|
||||
* Workflow landing improvements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18979 <https://github.com/galaxyproject/galaxy/pull/18979>`_
|
||||
* Allow recovering a normalized version of workflow request state from API by `@jmchilton <https://github.com/jmchilton>`_ in `#18985 <https://github.com/galaxyproject/galaxy/pull/18985>`_
|
||||
* Do not skip CI tests on missing tools. by `@jmchilton <https://github.com/jmchilton>`_ in `#19002 <https://github.com/galaxyproject/galaxy/pull/19002>`_
|
||||
* A variety of improvements around tool parameter modeling (second try) by `@jmchilton <https://github.com/jmchilton>`_ in `#19027 <https://github.com/galaxyproject/galaxy/pull/19027>`_
|
||||
* Add job metrics per invocation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19048 <https://github.com/galaxyproject/galaxy/pull/19048>`_
|
||||
* Move TRS import into WorkflowContentManager by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19070 <https://github.com/galaxyproject/galaxy/pull/19070>`_
|
||||
* Allow deferred datasets to behave as URIs by `@davelopez <https://github.com/davelopez>`_ in `#19077 <https://github.com/galaxyproject/galaxy/pull/19077>`_
|
||||
* Implement workflow parameter validators. by `@jmchilton <https://github.com/jmchilton>`_ in `#19092 <https://github.com/galaxyproject/galaxy/pull/19092>`_
|
||||
* Access public history in job cache / job search by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19108 <https://github.com/galaxyproject/galaxy/pull/19108>`_
|
||||
* Always validate hashes when provided by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19110 <https://github.com/galaxyproject/galaxy/pull/19110>`_
|
||||
* Enable specifying dataset hash in test jobs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19113 <https://github.com/galaxyproject/galaxy/pull/19113>`_
|
||||
* Enhance UTF-8 support for filename handling in downloads by `@arash77 <https://github.com/arash77>`_ in `#19161 <https://github.com/galaxyproject/galaxy/pull/19161>`_
|
||||
* Fix default value handling for parameters connected to required parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19219 <https://github.com/galaxyproject/galaxy/pull/19219>`_
|
||||
|
||||
=============
|
||||
Other changes
|
||||
=============
|
||||
|
||||
* Fix workflow invocation accessibility check by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18746 <https://github.com/galaxyproject/galaxy/pull/18746>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,44 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Fix some deprecations by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18433 <https://github.com/galaxyproject/galaxy/pull/18433>`_
|
||||
* Fix tag processing in library upload by `@davelopez <https://github.com/davelopez>`_ in `#18714 <https://github.com/galaxyproject/galaxy/pull/18714>`_
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Mixed enhancements from CWL branch by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18539 <https://github.com/galaxyproject/galaxy/pull/18539>`_
|
||||
* Workflow Landing Requests by `@jmchilton <https://github.com/jmchilton>`_ in `#18807 <https://github.com/galaxyproject/galaxy/pull/18807>`_
|
||||
* Migrate Library Contents API to FastAPI by `@arash77 <https://github.com/arash77>`_ in `#18838 <https://github.com/galaxyproject/galaxy/pull/18838>`_
|
||||
* Implement Pydantic model for workflow test format. by `@jmchilton <https://github.com/jmchilton>`_ in `#18884 <https://github.com/galaxyproject/galaxy/pull/18884>`_
|
||||
* Type annotations and fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18911 <https://github.com/galaxyproject/galaxy/pull/18911>`_
|
||||
* Allow CORS requests to /api/workflow_landings by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18963 <https://github.com/galaxyproject/galaxy/pull/18963>`_
|
||||
* Decouple user email from role name by `@jdavcs <https://github.com/jdavcs>`_ in `#18966 <https://github.com/galaxyproject/galaxy/pull/18966>`_
|
||||
* More concise, readable tool execution testing. by `@jmchilton <https://github.com/jmchilton>`_ in `#18977 <https://github.com/galaxyproject/galaxy/pull/18977>`_
|
||||
* Workflow landing improvements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18979 <https://github.com/galaxyproject/galaxy/pull/18979>`_
|
||||
* Allow recovering a normalized version of workflow request state from API by `@jmchilton <https://github.com/jmchilton>`_ in `#18985 <https://github.com/galaxyproject/galaxy/pull/18985>`_
|
||||
* A variety of improvements around tool parameter modeling (second try) by `@jmchilton <https://github.com/jmchilton>`_ in `#19027 <https://github.com/galaxyproject/galaxy/pull/19027>`_
|
||||
* Access public history in job cache / job search by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19108 <https://github.com/galaxyproject/galaxy/pull/19108>`_
|
||||
* Always validate hashes when provided by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19110 <https://github.com/galaxyproject/galaxy/pull/19110>`_
|
||||
* Fix default value handling for parameters connected to required parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19219 <https://github.com/galaxyproject/galaxy/pull/19219>`_
|
||||
* Release testing - selenium tests for workflow invocation export. by `@jmchilton <https://github.com/jmchilton>`_ in `#19262 <https://github.com/galaxyproject/galaxy/pull/19262>`_
|
||||
|
||||
=============
|
||||
Other changes
|
||||
=============
|
||||
|
||||
* Fix workflow invocation accessibility check by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18746 <https://github.com/galaxyproject/galaxy/pull/18746>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,24 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Fixes for errors reported by mypy 1.11.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18608 <https://github.com/galaxyproject/galaxy/pull/18608>`_
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Implement Declarative Testing for Workflow Behaviors by `@jmchilton <https://github.com/jmchilton>`_ in `#18542 <https://github.com/galaxyproject/galaxy/pull/18542>`_
|
||||
* Allow a posix file source to prefer linking. by `@jmchilton <https://github.com/jmchilton>`_ in `#19132 <https://github.com/galaxyproject/galaxy/pull/19132>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,19 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Add Tool-Centric APIs to the Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#18524 <https://github.com/galaxyproject/galaxy/pull/18524>`_
|
||||
* Rip repository_registry out of tool shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#18647 <https://github.com/galaxyproject/galaxy/pull/18647>`_
|
||||
* Assert that `data_column` parameters have a valid `data_ref` by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18949 <https://github.com/galaxyproject/galaxy/pull/18949>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,81 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Fix some deprecations by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18433 <https://github.com/galaxyproject/galaxy/pull/18433>`_
|
||||
* Fix handling of v2 hashes by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18522 <https://github.com/galaxyproject/galaxy/pull/18522>`_
|
||||
* Fixes for errors reported by mypy 1.11.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18608 <https://github.com/galaxyproject/galaxy/pull/18608>`_
|
||||
* Handle output parsing when tool is not available for tool-centric API. by `@jmchilton <https://github.com/jmchilton>`_ in `#18643 <https://github.com/galaxyproject/galaxy/pull/18643>`_
|
||||
* Fix new flake8-bugbear B039 and mypy type-var errors by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18755 <https://github.com/galaxyproject/galaxy/pull/18755>`_
|
||||
* Fix commas that shouldn't be in biotools_mappings.tsv by `@jmchilton <https://github.com/jmchilton>`_ in `#18919 <https://github.com/galaxyproject/galaxy/pull/18919>`_
|
||||
* Allow modes `z` and `Z` for docker volumes by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18998 <https://github.com/galaxyproject/galaxy/pull/18998>`_
|
||||
* Add requirement/resource to schema docs by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19172 <https://github.com/galaxyproject/galaxy/pull/19172>`_
|
||||
* Fix mulled_hash by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19199 <https://github.com/galaxyproject/galaxy/pull/19199>`_
|
||||
* Outputs filter linter fixes by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19208 <https://github.com/galaxyproject/galaxy/pull/19208>`_
|
||||
* Replace mambaforge Docker image with miniforge3 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19327 <https://github.com/galaxyproject/galaxy/pull/19327>`_
|
||||
* Partial backport of #19331 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19342 <https://github.com/galaxyproject/galaxy/pull/19342>`_
|
||||
* Backport fix for ``test_singularity_container_test`` test by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19349 <https://github.com/galaxyproject/galaxy/pull/19349>`_
|
||||
* Remove unnecessary quoting in conda package specification by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19382 <https://github.com/galaxyproject/galaxy/pull/19382>`_
|
||||
* Fix timeout handling for planemo / galaxy-tool-util by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19384 <https://github.com/galaxyproject/galaxy/pull/19384>`_
|
||||
* Fix for empty string in regex validator message. by `@jmchilton <https://github.com/jmchilton>`_ in `#19387 <https://github.com/galaxyproject/galaxy/pull/19387>`_
|
||||
* `mulled-build-tool` fix for packages wo version by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19450 <https://github.com/galaxyproject/galaxy/pull/19450>`_
|
||||
* Fix parsing of validators with inf limits by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19459 <https://github.com/galaxyproject/galaxy/pull/19459>`_
|
||||
* Remove print statement by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19469 <https://github.com/galaxyproject/galaxy/pull/19469>`_
|
||||
* Downgrade 'InteractiveTools are not enabled' to warning by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19518 <https://github.com/galaxyproject/galaxy/pull/19518>`_
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Add linters for datatypes by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17600 <https://github.com/galaxyproject/galaxy/pull/17600>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18406 <https://github.com/galaxyproject/galaxy/pull/18406>`_
|
||||
* Stray small changes from structured_tool_state branch. by `@jmchilton <https://github.com/jmchilton>`_ in `#18453 <https://github.com/galaxyproject/galaxy/pull/18453>`_
|
||||
* Add Tool-Centric APIs to the Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#18524 <https://github.com/galaxyproject/galaxy/pull/18524>`_
|
||||
* Mixed enhancements from CWL branch by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18539 <https://github.com/galaxyproject/galaxy/pull/18539>`_
|
||||
* Implement Declarative Testing for Workflow Behaviors by `@jmchilton <https://github.com/jmchilton>`_ in `#18542 <https://github.com/galaxyproject/galaxy/pull/18542>`_
|
||||
* Improvements to Tool Test Parsing by `@jmchilton <https://github.com/jmchilton>`_ in `#18560 <https://github.com/galaxyproject/galaxy/pull/18560>`_
|
||||
* More tool test typing. by `@jmchilton <https://github.com/jmchilton>`_ in `#18590 <https://github.com/galaxyproject/galaxy/pull/18590>`_
|
||||
* Parameter Model Improvements by `@jmchilton <https://github.com/jmchilton>`_ in `#18641 <https://github.com/galaxyproject/galaxy/pull/18641>`_
|
||||
* Another round of parameter model improvements. by `@jmchilton <https://github.com/jmchilton>`_ in `#18673 <https://github.com/galaxyproject/galaxy/pull/18673>`_
|
||||
* De-couple XML from tool interface for test collections. by `@jmchilton <https://github.com/jmchilton>`_ in `#18676 <https://github.com/galaxyproject/galaxy/pull/18676>`_
|
||||
* Another round of parameter model enhancements and tool tests by `@jmchilton <https://github.com/jmchilton>`_ in `#18678 <https://github.com/galaxyproject/galaxy/pull/18678>`_
|
||||
* Dynamic Models for Tool Test Validation by `@jmchilton <https://github.com/jmchilton>`_ in `#18679 <https://github.com/galaxyproject/galaxy/pull/18679>`_
|
||||
* Improvements to help terms & tool help. by `@jmchilton <https://github.com/jmchilton>`_ in `#18722 <https://github.com/galaxyproject/galaxy/pull/18722>`_
|
||||
* Implement tool upgrade assistant. by `@jmchilton <https://github.com/jmchilton>`_ in `#18728 <https://github.com/galaxyproject/galaxy/pull/18728>`_
|
||||
* Improvements to parameter models for test case inputs by `@jmchilton <https://github.com/jmchilton>`_ in `#18743 <https://github.com/galaxyproject/galaxy/pull/18743>`_
|
||||
* Remove `defaults` channel for conda usage by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18757 <https://github.com/galaxyproject/galaxy/pull/18757>`_
|
||||
* Modelling for Test Assertions by `@jmchilton <https://github.com/jmchilton>`_ in `#18787 <https://github.com/galaxyproject/galaxy/pull/18787>`_
|
||||
* Workflow Landing Requests by `@jmchilton <https://github.com/jmchilton>`_ in `#18807 <https://github.com/galaxyproject/galaxy/pull/18807>`_
|
||||
* Add docs on indexing for filter column by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18844 <https://github.com/galaxyproject/galaxy/pull/18844>`_
|
||||
* Implement Pydantic model for workflow test format. by `@jmchilton <https://github.com/jmchilton>`_ in `#18884 <https://github.com/galaxyproject/galaxy/pull/18884>`_
|
||||
* Improvements to Planemo test format based on feedback/discussions. by `@jmchilton <https://github.com/jmchilton>`_ in `#18889 <https://github.com/galaxyproject/galaxy/pull/18889>`_
|
||||
* Add support for arbitrarily ordered image axes in image content assertions by `@kostrykin <https://github.com/kostrykin>`_ in `#18891 <https://github.com/galaxyproject/galaxy/pull/18891>`_
|
||||
* Remove some unused dynamic drill down options. by `@jmchilton <https://github.com/jmchilton>`_ in `#18892 <https://github.com/galaxyproject/galaxy/pull/18892>`_
|
||||
* Type annotations and fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18911 <https://github.com/galaxyproject/galaxy/pull/18911>`_
|
||||
* Add filter null collection operation tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18928 <https://github.com/galaxyproject/galaxy/pull/18928>`_
|
||||
* Assert that `data_column` parameters have a valid `data_ref` by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18949 <https://github.com/galaxyproject/galaxy/pull/18949>`_
|
||||
* More concise, readable tool execution testing. by `@jmchilton <https://github.com/jmchilton>`_ in `#18977 <https://github.com/galaxyproject/galaxy/pull/18977>`_
|
||||
* Workflow landing improvements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18979 <https://github.com/galaxyproject/galaxy/pull/18979>`_
|
||||
* Add hint to the tool schema about runtime conditional changes by `@martenson <https://github.com/martenson>`_ in `#18996 <https://github.com/galaxyproject/galaxy/pull/18996>`_
|
||||
* A variety of improvements around tool parameter modeling (second try) by `@jmchilton <https://github.com/jmchilton>`_ in `#19027 <https://github.com/galaxyproject/galaxy/pull/19027>`_
|
||||
* Better logging around tool loading by `@jmchilton <https://github.com/jmchilton>`_ in `#19029 <https://github.com/galaxyproject/galaxy/pull/19029>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19031 <https://github.com/galaxyproject/galaxy/pull/19031>`_
|
||||
* Integrate Tool Parameter Modeling into Linting (for Planemo) by `@jmchilton <https://github.com/jmchilton>`_ in `#19073 <https://github.com/galaxyproject/galaxy/pull/19073>`_
|
||||
* Allow deferred datasets to behave as URIs by `@davelopez <https://github.com/davelopez>`_ in `#19077 <https://github.com/galaxyproject/galaxy/pull/19077>`_
|
||||
* Implement workflow parameter validators. by `@jmchilton <https://github.com/jmchilton>`_ in `#19092 <https://github.com/galaxyproject/galaxy/pull/19092>`_
|
||||
* Enable specifying dataset hash in test jobs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19113 <https://github.com/galaxyproject/galaxy/pull/19113>`_
|
||||
* Add linter to check validity of output filters by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19114 <https://github.com/galaxyproject/galaxy/pull/19114>`_
|
||||
* Also use miniforge docker for container building by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19128 <https://github.com/galaxyproject/galaxy/pull/19128>`_
|
||||
* Fix default value handling for parameters connected to required parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19219 <https://github.com/galaxyproject/galaxy/pull/19219>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,17 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Type annotations and fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18911 <https://github.com/galaxyproject/galaxy/pull/18911>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,37 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Fixes for errors reported by mypy 1.11.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18608 <https://github.com/galaxyproject/galaxy/pull/18608>`_
|
||||
* Fix numerous issues with tool input format "21.01" by `@jmchilton <https://github.com/jmchilton>`_ in `#19030 <https://github.com/galaxyproject/galaxy/pull/19030>`_
|
||||
* Partial backport of #19331 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19342 <https://github.com/galaxyproject/galaxy/pull/19342>`_
|
||||
* Fix config template validation for file sources and object store templates by `@davelopez <https://github.com/davelopez>`_ in `#19414 <https://github.com/galaxyproject/galaxy/pull/19414>`_
|
||||
* Serialize message exceptions on execution error by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19483 <https://github.com/galaxyproject/galaxy/pull/19483>`_
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Allow OAuth 2.0 user defined file sources (w/Dropbox integration) by `@jmchilton <https://github.com/jmchilton>`_ in `#18272 <https://github.com/galaxyproject/galaxy/pull/18272>`_
|
||||
* Add Python 3.13 support by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18449 <https://github.com/galaxyproject/galaxy/pull/18449>`_
|
||||
* Add Tool-Centric APIs to the Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#18524 <https://github.com/galaxyproject/galaxy/pull/18524>`_
|
||||
* Rip repository_registry out of tool shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#18647 <https://github.com/galaxyproject/galaxy/pull/18647>`_
|
||||
* Workflow Landing Requests by `@jmchilton <https://github.com/jmchilton>`_ in `#18807 <https://github.com/galaxyproject/galaxy/pull/18807>`_
|
||||
* Update Mypy to 1.11.2 and fix new signature override errors by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18811 <https://github.com/galaxyproject/galaxy/pull/18811>`_
|
||||
* Raise exception if CompressedFile used on incompatible file by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18888 <https://github.com/galaxyproject/galaxy/pull/18888>`_
|
||||
* Type annotations and fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18911 <https://github.com/galaxyproject/galaxy/pull/18911>`_
|
||||
* Workflow landing improvements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18979 <https://github.com/galaxyproject/galaxy/pull/18979>`_
|
||||
* Run installed Galaxy with no config and a simplified entry point by `@natefoo <https://github.com/natefoo>`_ in `#19050 <https://github.com/galaxyproject/galaxy/pull/19050>`_
|
||||
* Enhance UTF-8 support for filename handling in downloads by `@arash77 <https://github.com/arash77>`_ in `#19161 <https://github.com/galaxyproject/galaxy/pull/19161>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,91 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Drop "Send to cloud" tool and associated cloudauthz code by `@jdavcs <https://github.com/jdavcs>`_ in `#18196 <https://github.com/galaxyproject/galaxy/pull/18196>`_
|
||||
* Fix some deprecations by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18433 <https://github.com/galaxyproject/galaxy/pull/18433>`_
|
||||
* Fix MessageException handling in get_edit by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18529 <https://github.com/galaxyproject/galaxy/pull/18529>`_
|
||||
* Fixes for errors reported by mypy 1.11.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18608 <https://github.com/galaxyproject/galaxy/pull/18608>`_
|
||||
* Fix new flake8-bugbear B039 and mypy type-var errors by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18755 <https://github.com/galaxyproject/galaxy/pull/18755>`_
|
||||
* Fix response if dataset requested by display application is deleted by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18803 <https://github.com/galaxyproject/galaxy/pull/18803>`_
|
||||
* Ignore preflight options in API schema by `@jmchilton <https://github.com/jmchilton>`_ in `#18983 <https://github.com/galaxyproject/galaxy/pull/18983>`_
|
||||
* Fix issue with generating slug for sharing by `@arash77 <https://github.com/arash77>`_ in `#18986 <https://github.com/galaxyproject/galaxy/pull/18986>`_
|
||||
* Fix auto-detect metadata from Edit Dataset Attributes panel by `@davelopez <https://github.com/davelopez>`_ in `#19025 <https://github.com/galaxyproject/galaxy/pull/19025>`_
|
||||
* Prevent purged users from logging in by `@jdavcs <https://github.com/jdavcs>`_ in `#19094 <https://github.com/galaxyproject/galaxy/pull/19094>`_
|
||||
* Restore access to saved visualizations by `@guerler <https://github.com/guerler>`_ in `#19136 <https://github.com/galaxyproject/galaxy/pull/19136>`_
|
||||
* Fix PSA Redirect by `@dannon <https://github.com/dannon>`_ in `#19247 <https://github.com/galaxyproject/galaxy/pull/19247>`_
|
||||
* Login redirect followup by `@dannon <https://github.com/dannon>`_ in `#19251 <https://github.com/galaxyproject/galaxy/pull/19251>`_
|
||||
* Fix invocation metrics usability by providing job context. by `@jmchilton <https://github.com/jmchilton>`_ in `#19279 <https://github.com/galaxyproject/galaxy/pull/19279>`_
|
||||
* Fix importing shared workflows with deeply nested subworkflows by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19335 <https://github.com/galaxyproject/galaxy/pull/19335>`_
|
||||
* Show Keycloak provider label in UI by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19447 <https://github.com/galaxyproject/galaxy/pull/19447>`_
|
||||
* Serialize message exceptions on execution error by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19483 <https://github.com/galaxyproject/galaxy/pull/19483>`_
|
||||
* Use visualizations api in trackster by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19495 <https://github.com/galaxyproject/galaxy/pull/19495>`_
|
||||
* Set a hard limit of 100 invocations per request in api/invocations by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19497 <https://github.com/galaxyproject/galaxy/pull/19497>`_
|
||||
* Fix deleting lddas in batch by `@davelopez <https://github.com/davelopez>`_ in `#19506 <https://github.com/galaxyproject/galaxy/pull/19506>`_
|
||||
* Fix WSGI response status handling in controller methods by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19520 <https://github.com/galaxyproject/galaxy/pull/19520>`_
|
||||
* Fix saved visualization (non-trackster ones) not displaying by `@davelopez <https://github.com/davelopez>`_ in `#19561 <https://github.com/galaxyproject/galaxy/pull/19561>`_
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Experimental galactic wizard by `@dannon <https://github.com/dannon>`_ in `#15860 <https://github.com/galaxyproject/galaxy/pull/15860>`_
|
||||
* Feature - stdout live reporting by `@gecage952 <https://github.com/gecage952>`_ in `#16975 <https://github.com/galaxyproject/galaxy/pull/16975>`_
|
||||
* Add errors fast api by `@arash77 <https://github.com/arash77>`_ in `#18093 <https://github.com/galaxyproject/galaxy/pull/18093>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18226 <https://github.com/galaxyproject/galaxy/pull/18226>`_
|
||||
* Allow OAuth 2.0 user defined file sources (w/Dropbox integration) by `@jmchilton <https://github.com/jmchilton>`_ in `#18272 <https://github.com/galaxyproject/galaxy/pull/18272>`_
|
||||
* More data access tests, some refactoring and cleanup by `@jdavcs <https://github.com/jdavcs>`_ in `#18312 <https://github.com/galaxyproject/galaxy/pull/18312>`_
|
||||
* Replace History Dataset Picker in Library Folder by `@itisAliRH <https://github.com/itisAliRH>`_ in `#18518 <https://github.com/galaxyproject/galaxy/pull/18518>`_
|
||||
* Update openapi-typescript dependency to version 6.7.6 by `@davelopez <https://github.com/davelopez>`_ in `#18519 <https://github.com/galaxyproject/galaxy/pull/18519>`_
|
||||
* Improve datasets permissions API schema typing by `@davelopez <https://github.com/davelopez>`_ in `#18563 <https://github.com/galaxyproject/galaxy/pull/18563>`_
|
||||
* Drop unused datasets controller methods by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18568 <https://github.com/galaxyproject/galaxy/pull/18568>`_
|
||||
* Improve typing for archived histories API schema by `@davelopez <https://github.com/davelopez>`_ in `#18586 <https://github.com/galaxyproject/galaxy/pull/18586>`_
|
||||
* More tool test typing. by `@jmchilton <https://github.com/jmchilton>`_ in `#18590 <https://github.com/galaxyproject/galaxy/pull/18590>`_
|
||||
* Improve update user API payload schema by `@davelopez <https://github.com/davelopez>`_ in `#18602 <https://github.com/galaxyproject/galaxy/pull/18602>`_
|
||||
* Improve update history payload schema by `@davelopez <https://github.com/davelopez>`_ in `#18618 <https://github.com/galaxyproject/galaxy/pull/18618>`_
|
||||
* Parameter Model Improvements by `@jmchilton <https://github.com/jmchilton>`_ in `#18641 <https://github.com/galaxyproject/galaxy/pull/18641>`_
|
||||
* Improve accept header API schema by `@davelopez <https://github.com/davelopez>`_ in `#18668 <https://github.com/galaxyproject/galaxy/pull/18668>`_
|
||||
* Allow access to invocation via shared or published history by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18707 <https://github.com/galaxyproject/galaxy/pull/18707>`_
|
||||
* Migrate Visualizations API to FastAPI by `@arash77 <https://github.com/arash77>`_ in `#18721 <https://github.com/galaxyproject/galaxy/pull/18721>`_
|
||||
* Improvements to help terms & tool help. by `@jmchilton <https://github.com/jmchilton>`_ in `#18722 <https://github.com/galaxyproject/galaxy/pull/18722>`_
|
||||
* More typing, docs, and decomposition around tool execution by `@jmchilton <https://github.com/jmchilton>`_ in `#18758 <https://github.com/galaxyproject/galaxy/pull/18758>`_
|
||||
* Refactor ``LibraryDatasetsManager`` and fix type annotation issue by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18773 <https://github.com/galaxyproject/galaxy/pull/18773>`_
|
||||
* Backend handling of setting user-role, user-group, and group-role associations by `@jdavcs <https://github.com/jdavcs>`_ in `#18777 <https://github.com/galaxyproject/galaxy/pull/18777>`_
|
||||
* Update Visualization FastAPI by `@arash77 <https://github.com/arash77>`_ in `#18792 <https://github.com/galaxyproject/galaxy/pull/18792>`_
|
||||
* Workflow Landing Requests by `@jmchilton <https://github.com/jmchilton>`_ in `#18807 <https://github.com/galaxyproject/galaxy/pull/18807>`_
|
||||
* Migrate Library Contents API to FastAPI by `@arash77 <https://github.com/arash77>`_ in `#18838 <https://github.com/galaxyproject/galaxy/pull/18838>`_
|
||||
* Enable extra user preferences for remotely authorized users by `@maartenschermer <https://github.com/maartenschermer>`_ in `#18887 <https://github.com/galaxyproject/galaxy/pull/18887>`_
|
||||
* Enable ``ignore-without-code`` mypy error code by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18898 <https://github.com/galaxyproject/galaxy/pull/18898>`_
|
||||
* Type annotations and fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18911 <https://github.com/galaxyproject/galaxy/pull/18911>`_
|
||||
* Allow CORS requests to /api/workflow_landings by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18963 <https://github.com/galaxyproject/galaxy/pull/18963>`_
|
||||
* Decouple user email from role name by `@jdavcs <https://github.com/jdavcs>`_ in `#18966 <https://github.com/galaxyproject/galaxy/pull/18966>`_
|
||||
* Optimize to_history_dataset_association in create_datasets_from_library_folder by `@arash77 <https://github.com/arash77>`_ in `#18970 <https://github.com/galaxyproject/galaxy/pull/18970>`_
|
||||
* Workflow landing improvements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18979 <https://github.com/galaxyproject/galaxy/pull/18979>`_
|
||||
* Allow recovering a normalized version of workflow request state from API by `@jmchilton <https://github.com/jmchilton>`_ in `#18985 <https://github.com/galaxyproject/galaxy/pull/18985>`_
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19031 <https://github.com/galaxyproject/galaxy/pull/19031>`_
|
||||
* Silence the quota manager for updates by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19046 <https://github.com/galaxyproject/galaxy/pull/19046>`_
|
||||
* Add job metrics per invocation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19048 <https://github.com/galaxyproject/galaxy/pull/19048>`_
|
||||
* Run installed Galaxy with no config and a simplified entry point by `@natefoo <https://github.com/natefoo>`_ in `#19050 <https://github.com/galaxyproject/galaxy/pull/19050>`_
|
||||
* Move TRS import into WorkflowContentManager by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19070 <https://github.com/galaxyproject/galaxy/pull/19070>`_
|
||||
* Better cleanup of sharing roles on user purge by `@jdavcs <https://github.com/jdavcs>`_ in `#19096 <https://github.com/galaxyproject/galaxy/pull/19096>`_
|
||||
* Always validate hashes when provided by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19110 <https://github.com/galaxyproject/galaxy/pull/19110>`_
|
||||
* Backport of Workflow Editor Activity Bar by `@dannon <https://github.com/dannon>`_ in `#19212 <https://github.com/galaxyproject/galaxy/pull/19212>`_
|
||||
* Workflow Inputs Activity by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19252 <https://github.com/galaxyproject/galaxy/pull/19252>`_
|
||||
|
||||
=============
|
||||
Other changes
|
||||
=============
|
||||
|
||||
* Format dev to fix linting. by `@jmchilton <https://github.com/jmchilton>`_ in `#18860 <https://github.com/galaxyproject/galaxy/pull/18860>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,25 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Fix WSGI response status handling in controller methods by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19520 <https://github.com/galaxyproject/galaxy/pull/19520>`_
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Parse stored config details to script-based visualizations by `@guerler <https://github.com/guerler>`_ in `#18651 <https://github.com/galaxyproject/galaxy/pull/18651>`_
|
||||
* Enable extra user preferences for remotely authorized users by `@maartenschermer <https://github.com/maartenschermer>`_ in `#18887 <https://github.com/galaxyproject/galaxy/pull/18887>`_
|
||||
* Run installed Galaxy with no config and a simplified entry point by `@natefoo <https://github.com/natefoo>`_ in `#19050 <https://github.com/galaxyproject/galaxy/pull/19050>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
@@ -9,6 +9,17 @@ History
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.2.0 (2025-02-06)
|
||||
-------------------
|
||||
|
||||
|
||||
============
|
||||
Enhancements
|
||||
============
|
||||
|
||||
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18406 <https://github.com/galaxyproject/galaxy/pull/18406>`_
|
||||
|
||||
-------------------
|
||||
24.1.4 (2024-12-11)
|
||||
-------------------
|
||||
|
||||
Reference in New Issue
Block a user