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Fix for loading proprietary datatype sniffers that are included in installed tool shed repositories.

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This commit is contained in:
Greg Von Kuster
2012-02-07 11:15:20 -05:00
parent 9d4b107536
commit bc486d508e
1 changed files with 15 additions and 5 deletions
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lib/galaxy/datatypes/registry.py
+15 -5
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@@ -187,11 +187,21 @@ class Registry( object ):
try:
fields = dtype.split( ":" )
datatype_module = fields[0]
datatype_class = fields[1]
module = __import__( datatype_module )
for comp in datatype_module.split( '.' )[ 1: ]:
module = getattr( module, comp )
aclass = getattr( module, datatype_class )()
datatype_class_name = fields[1]
module = None
if imported_modules:
# See if one of the imported modules contains the datatype class name.
for imported_module in imported_modules:
if hasattr( imported_module, datatype_class_name ):
module = imported_module
break
if module is None:
# The datatype class name must be contained in one of the datatype
# modules in the Galaxy distribution.
module = __import__( datatype_module )
for comp in datatype_module.split( '.' )[ 1: ]:
module = getattr( module, comp )
aclass = getattr( module, datatype_class_name )()
if deactivate:
self.sniff_order.remove( aclass )
self.log.debug( 'Deactivated sniffer for datatype: %s' % dtype )