Open input file in read mode

2026-09-24 16:30:27 +08:00 · 2021-05-19 09:40:50 +02:00
parent 4ec02d1b6c
commit bbbfde85ef
1 changed files with 1 additions and 1 deletions
@@ -25,7 +25,7 @@ def safe_bed_file(infile):
    https://lists.soe.ucsc.edu/pipermail/genome/2007-May/013561.html
    """
    fix_pat = re.compile("^(track|browser)")
-    with tempfile.NamedTemporaryFile(mode='w', delete=False) as out_handle, open(infile, 'w') as in_handle:
+    with tempfile.NamedTemporaryFile(mode='w', delete=False) as out_handle, open(infile, 'r') as in_handle:
        for line in in_handle:
            if fix_pat.match(line):
                line = "#" + line