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otherwise it will overwrite linking source file

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Ignacio Eguinoa
2017-11-01 13:22:43 -04:00
committed by John Chilton
parent 24da84a525
commit b7e05a012c
1 changed files with 1 additions and 1 deletions
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lib/galaxy/jobs/__init__.py
+1 -1
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@@ -990,7 +990,7 @@ class JobWrapper(object, HasResourceParameters):
etype, evalue, tb = sys.exc_info()
outputs_to_working_directory = util.asbool(self.get_destination_configuration("outputs_to_working_directory", False))
if outputs_to_working_directory:
if outputs_to_working_directory and not self.__link_file_check():
for dataset_path in self.get_output_fnames():
try:
shutil.move(dataset_path.false_path, dataset_path.real_path)