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Update tool

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This commit is contained in:
Anup Kumar
2021-02-24 18:35:03 +00:00
parent 6cd188bed1
commit b793fd82e1
1 changed files with 5 additions and 4 deletions
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tools/interactive/interactivetool_ml_jupyter_notebook.xml
+5 -4
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@@ -1,6 +1,6 @@
<tool id="interactive_ml_tool_jupyter_notebook" tool_type="interactive" name="Interactive Jupyter Notebook for Machine learning" version="0.1">
<requirements>
<container type="docker">docker.io/anupkumar/sample-docker-ml-jupyter:latest</container>
<container type="docker">docker.io/anupkumar/sample-docker-ml-jupyter:latest</container>
</requirements>
<entry_points>
<entry_point name="Jupyter Interactive Tool" requires_domain="True">
@@ -17,7 +17,8 @@
<environment_variable name="API_KEY" inject="api_key" />
</environment_variables>
<command detect_errors="aggressive"><![CDATA[
#import re
#import re
echo "Inside tool definition....================" &&
export GALAXY_WORKING_DIR=`pwd` &&
mkdir -p ./jupyter/outputs/ &&
mkdir -p ./jupyter/data &&
@@ -27,9 +28,9 @@
## change into the directory where the notebooks are located
cd ./jupyter/ &&
export PATH=/usr/local/bin:\$PATH &&
##export PATH=/usr/local/bin:\$PATH &&
cp '$__tool_directory__/default_notebook_ml.ipynb' ./ipython_galaxy_notebook_ml.ipynb &&
chown -R \$NB_USER `pwd` &&
chown -R \$NB_USER:users `pwd` &&
##chown \$NB_USER ./ipython_galaxy_notebook_ml.ipynb &&
jupyter trust ./ipython_galaxy_notebook_ml.ipynb &&
/usr/local/bin/start-notebook.sh