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change to a more defensive approach, clarify varnames

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This commit is contained in:
Martin Cech
2018-06-05 16:19:04 -04:00
parent a40abcd6e4
commit b62099f418
1 changed files with 10 additions and 7 deletions
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scripts/grt/export.py
+10 -7
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@@ -289,35 +289,38 @@ def main(argv):
hdas = {i[0]: i[1:] for i in hdas}
datasets = {i[0]: i[1:] for i in datasets}
for job in job_to_hda_ids:
for job_to_hda in job_to_hda_ids:
filetype = job[1]
job = job[0]
job = job_to_hda[0] # job_id, hda_id, name
filetype = job_to_hda[1] # input|output
# No associated job
if job[0] not in job_tool_map:
continue
# If the tool is blacklisted, exclude everywhere
if job_tool_map[job[0]] in blacklisted_tools:
continue
hda_id = job[1]
# catch hda_id's where
if hda_id is None:
continue
dataset_id = hdas[hda_id][0]
if dataset_id is None:
continue
handle_datasets.write(str(job[0]))
handle_datasets.write('\t')
handle_datasets.write(str(hda_id))
handle_datasets.write('\t')
handle_datasets.write(hdas[hda_id][1])
handle_datasets.write(str(hdas[hda_id][1]))
handle_datasets.write('\t')
handle_datasets.write(str(datasets[dataset_id][0]))
handle_datasets.write('\t')
handle_datasets.write(job[2])
handle_datasets.write(str(job[2]))
handle_datasets.write('\t')
handle_datasets.write(filetype)
handle_datasets.write(str(filetype))
handle_datasets.write('\n')
handle_datasets.close()