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Remove FreeBayes from tool_conf.xml.sample/main since it has been migrated to the toolshed.
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@@ -208,7 +208,6 @@
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<tool file="phenotype_association/lps.xml" />
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<tool file="phenotype_association/hilbertvis.xml" />
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<tool file="phenotype_association/freebayes.xml" />
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<tool file="variant_detection/freebayes.xml" />
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<tool file="phenotype_association/master2pg.xml" />
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<tool file="phenotype_association/vcf2pgSnp.xml" />
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<tool file="phenotype_association/dividePgSnpAlleles.xml" />
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@@ -319,9 +318,6 @@
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<tool file="indels/indel_sam2interval.xml" />
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<tool file="indels/indel_analysis.xml" />
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</section>
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<section name="NGS: Variant Detection" id="variant_detection">
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<tool file="variant_detection/freebayes.xml" />
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</section>
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<section name="NGS: Peak Calling" id="peak_calling">
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<tool file="peak_calling/macs_wrapper.xml" />
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<tool file="peak_calling/sicer_wrapper.xml" />
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@@ -477,7 +477,6 @@
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<tool file="phenotype_association/lps.xml" />
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<tool file="phenotype_association/hilbertvis.xml" />
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<tool file="phenotype_association/freebayes.xml" />
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<tool file="variant_detection/freebayes.xml" />
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<tool file="phenotype_association/master2pg.xml" />
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<tool file="phenotype_association/vcf2pgSnp.xml" />
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<tool file="phenotype_association/dividePgSnpAlleles.xml" />
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