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Add new datatypes for vg tool

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Saim Momin
2026-01-22 15:29:15 +01:00
parent 4fdb8deeac
commit b23173fecd
1 changed files with 4 additions and 0 deletions
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lib/galaxy/config/sample/datatypes_conf.xml.sample
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@@ -603,6 +603,10 @@
<datatype extension="interval_index" type="galaxy.datatypes.binary:Binary" subclass="true"/>
<datatype extension="odgi" type="galaxy.datatypes.binary:Binary" subclass="true" description="Genomic variation graphs self index used by odgi." display_in_upload="true"/>
<datatype extension="vg" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" description="Genomic variation graphs." display_in_upload="true"/>
<datatype extension="vg.loci" type="galaxy.datatypes.binary:Binary" subclass="true" description="VG loci index mapping graph positions to locus identifiers." display_in_upload="true"/>
<datatype extension="vg.dist" type="galaxy.datatypes.binary:Binary" subclass="true" description="VG distance index storing minimum distances between graph positions." display_in_upload="true"/>
<datatype extension="vg.snarls" type="galaxy.datatypes.binary:Binary" subclass="true" description="VG snarl decomposition index defining nested variation sites in a graph." display_in_upload="true"/>
<datatype extension="vg.gamp" type="galaxy.datatypes.binary:Binary" subclass="true" description="VG GAM position index enabling random access to graph alignments." display_in_upload="true"/>
<datatype extension="hal" type="galaxy.datatypes.binary:Binary" subclass="true" description="Hierarchical Alignment Format" display_in_upload="true" description_url="https://github.com/ComparativeGenomicsToolkit/hal"/>
<datatype extension="hal.pg" type="galaxy.datatypes.binary:Binary" subclass="true" description="Pairwise genome alignment graph." display_in_upload="true"/>
<datatype extension="hal.hg" type="galaxy.datatypes.binary:Binary" subclass="true" description="Hierarchical multi-genome alignment graph." display_in_upload="true"/>