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Merge pull request #3118 from bgruening/remove_mako_user_pref
New User Preferences User Interface
This commit is contained in:
Martin Cech
@@ -8,6 +8,7 @@ var jQuery = require( 'jquery' ),
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HistoryPanel = require( './history-panel' ),
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PAGE = require( 'layout/page' ),
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ToolForm = require( 'mvc/tool/tool-form' ),
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UserPreferences = require( 'mvc/user/user-preferences' );
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Tours = require( 'mvc/tours' );
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/** define the 'Analyze Data'/analysis/main/home page for Galaxy
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@@ -100,17 +101,21 @@ window.app = function app( options, bootstrapped ){
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// TODO: remove annoying 'root' from root urls
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'(/)root*' : 'home',
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'(/)tours(/)(:tour_id)' : 'show_tours',
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'(/)users(/)' : 'show_users',
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},
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show_tours : function( tour_id ){
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if (tour_id){
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Tours.giveTour(tour_id);
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}
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else{
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if ( tour_id ){
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Tours.giveTour( tour_id );
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} else {
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centerPanel.display( new Tours.ToursView() );
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}
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},
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show_users : function(){
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centerPanel.display( new UserPreferences.View() );
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},
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/** */
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home : function( params ){
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// TODO: to router, remove Globals
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@@ -235,8 +235,11 @@ var Collection = Backbone.Collection.extend({
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title : 'Logged in as ' + Galaxy.user.get( 'email' )
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},{
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title : 'Preferences',
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url : 'user?cntrller=user',
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target : 'galaxy_main'
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url : 'users',
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target : 'galaxy_main',
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onclick : function() {
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window.location = Galaxy.root + 'users';
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}
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},{
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title : 'Custom Builds',
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url : 'user/dbkeys',
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@@ -258,17 +261,8 @@ var Collection = Backbone.Collection.extend({
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title : 'Saved Pages',
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url : 'page/list',
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target : '_top'
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},{
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title : 'API Keys',
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url : 'user/api_keys?cntrller=user',
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target : 'galaxy_main'
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}]
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}]
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};
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options.use_remote_user && userTab.menu.push({
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title : 'Public Name',
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url : 'user/edit_username?cntrller=user',
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target : 'galaxy_main'
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});
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this.add( userTab );
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}
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var activeView = this.get( options.active_view );
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@@ -138,14 +138,15 @@ var PageLayoutView = Backbone.View.extend( BaseMVC.LoggableMixin ).extend({
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_checkCommunicationServerOnline: function(){
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var host = window.Galaxy.config.communication_server_host,
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port = window.Galaxy.config.communication_server_port,
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preferences = window.Galaxy.user.attributes.preferences,
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$chat_icon_element = $( "#show-chat-online" );
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/** Check if the user has deactivated the communication in it's personal settings */
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if (window.Galaxy.user.attributes.preferences !== undefined && window.Galaxy.user.attributes.preferences.communication_server === '1') {
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if ( preferences && [ '1', 'true' ].indexOf( preferences.communication_server ) != -1 ) {
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// See if the configured communication server is available
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$.ajax({
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url: host + ":" + port,
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})
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.success( function( data ) {
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.success( function( data ) {
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// enable communication only when a user is logged in
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if( window.Galaxy.user.id !== null ) {
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if( $chat_icon_element.css( "visibility") === "hidden" ) {
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@@ -14,6 +14,7 @@ define(['utils/utils',
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/** Available parameter types */
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types: {
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'text' : '_fieldText',
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'password' : '_fieldText',
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'select' : '_fieldSelect',
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'data_column' : '_fieldSelect',
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'genomebuild' : '_fieldSelect',
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@@ -146,7 +147,9 @@ define(['utils/utils',
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// create input element
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return new Ui.Input({
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id : 'field-' + input_def.id,
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type : input_def.type,
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area : input_def.area,
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readonly : input_def.readonly,
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placeholder : input_def.placeholder,
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onchange : input_def.onchange
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});
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@@ -104,7 +104,7 @@ function( Utils, Ui, Portlet, Repeat, InputElement, Parameters ) {
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// add parsed/minimum number of repeat blocks
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//
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var n_cache = _.size( input_def.cache );
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for ( var i = 0; i < Math.max( Math.max( n_cache, input_def.min ), input_def.default || 0 ); i++ ) {
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for ( var i = 0; i < Math.max( Math.max( n_cache, input_def.min || 0 ), input_def.default || 0 ); i++ ) {
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create( i < n_cache ? input_def.cache[ i ] : input_def.inputs );
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}
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@@ -85,6 +85,7 @@ define(['utils/utils',
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type : 'text',
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placeholder : '',
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disabled : false,
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readonly : false,
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visible : true,
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cls : '',
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area : false,
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@@ -104,6 +105,7 @@ define(['utils/utils',
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return this.model.get( 'value' );
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},
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render: function() {
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var self = this;
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this.$el.removeClass()
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.addClass( 'ui-' + this.tagName )
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.addClass( this.model.get( 'cls' ) )
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@@ -116,7 +118,9 @@ define(['utils/utils',
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if ( this.model.get( 'value' ) !== this.$el.val() ) {
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this.$el.val( this.model.get( 'value' ) );
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}
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this.model.get( 'disabled' ) ? this.$el.attr( 'disabled', true ) : this.$el.removeAttr( 'disabled' );
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_.each( [ 'readonly', 'disabled' ], function( attr_name ) {
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self.model.get( attr_name ) ? self.$el.attr( attr_name, true ) : self.$el.removeAttr( attr_name );
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});
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this.$el[ this.model.get( 'visible' ) ? 'show' : 'hide' ]();
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return this;
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},
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@@ -0,0 +1,198 @@
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/** User Preferences view */
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define( [ 'mvc/form/form-view', 'mvc/ui/ui-misc' ], function( Form, Ui ) {
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var View = Backbone.View.extend({
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initialize: function() {
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this.defs = {
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'information': {
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title : 'Manage information',
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description : 'Edit your email, addresses and custom parameters or change your username.',
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url : 'api/users/' + Galaxy.user.id + '/information/inputs',
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icon : 'fa-user'
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},
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'password': {
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title : 'Change password',
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description : 'Allows you to change your login credentials.',
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icon : 'fa-unlock-alt',
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url : 'api/users/' + Galaxy.user.id + '/password/inputs',
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submit_title : 'Save password',
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},
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'communication': {
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title : 'Change communication settings',
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description : 'Enable or disable the communication feature to chat with other users.',
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url : 'api/users/' + Galaxy.user.id + '/communication/inputs',
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icon : 'fa-comments-o'
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},
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'permissions': {
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title : 'Set dataset permissions for new histories',
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description : 'Grant others default access to newly created histories. Changes made here will only affect histories created after these settings have been stored.',
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url : 'api/users/' + Galaxy.user.id + '/permissions/inputs',
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icon : 'fa-users',
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submit_title : 'Save permissions'
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},
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'api_key': {
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title : 'Manage API key',
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description : 'Access your current API key or create a new one.',
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url : 'api/users/' + Galaxy.user.id + '/api_key/inputs',
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icon : 'fa-key',
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submit_title : 'Create a new key',
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submit_icon : 'fa-check'
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},
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'toolbox_filters': {
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title : 'Manage Toolbox filters',
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description : 'Customize your Toolbox by displaying or omitting sets of Tools.',
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url : 'api/users/' + Galaxy.user.id + '/toolbox_filters/inputs',
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icon : 'fa-filter',
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submit_title : 'Save filters'
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},
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'openids': {
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title : 'Manage OpenIDs',
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description : 'Associate OpenIDs with your account.',
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icon : 'fa-openid',
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onclick : function() {
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window.location.href = Galaxy.root + 'user/openid_manage?cntrller=user&use_panels=True';
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}
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},
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'logout': {
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title : 'Sign out',
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description : 'Click here to sign out of all sessions.',
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icon : 'fa-sign-out',
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onclick : function() {
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Galaxy.modal.show({
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title : 'Sign out',
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body : 'Do you want to continue and sign out of all active sessions?',
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buttons : {
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'Cancel' : function() { Galaxy.modal.hide(); },
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'Sign out' : function() { window.location.href = Galaxy.root + 'user/logout'; }
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}
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});
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}
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}
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}
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this.message = new Ui.Message();
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this.setElement( '<div/>' );
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this.render();
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},
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render: function() {
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var self = this;
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var config = Galaxy.config;
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$.getJSON( Galaxy.root + 'api/users/' + Galaxy.user.id, function( data ) {
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self.$preferences = $( '<div/>' ).addClass( 'ui-panel' )
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.append( self.message.$el )
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.append( $( '<h2/>' ).append( 'User preferences' ) )
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.append( $( '<p/>' ).append( 'You are logged in as <strong>' + _.escape( data.email ) + '</strong>.' ) )
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.append( self.$table = $( '<table/>' ).addClass( 'ui-panel-table' ) );
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if( !config.use_remote_user ) {
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self._link( self.defs.information );
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self._link( self.defs.password );
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}
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if( config.enable_communication_server ) {
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self._link( self.defs.communication );
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}
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self._link( self.defs.permissions );
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self._link( self.defs.api_key );
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if( config.has_user_tool_filters ) {
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self._link( self.defs.toolbox_filters );
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}
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if( config.enable_openid && !config.use_remote_user ) {
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self._link( self.defs.openids );
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}
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self._link( self.defs.logout );
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self.$preferences.append( self._templateFooter( data ) );
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self.$el.empty().append( self.$preferences );
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});
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},
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_link: function( page ) {
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var self = this;
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var $page_item = $( this._templateRow( page ) );
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this.$table.append( $page_item );
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$page_item.find( 'a' ).on( 'click', function() {
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if ( page.url ) {
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$.ajax({
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url : Galaxy.root + page.url,
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type : 'GET'
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}).done( function( response ) {
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var options = $.extend( {}, page, response );
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var form = new Form({
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title : options.title,
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icon : options.icon,
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inputs : options.inputs,
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operations: {
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'submit': new Ui.ButtonIcon({
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tooltip : options.submit_tooltip,
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title : options.submit_title || 'Save settings',
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icon : options.submit_icon || 'fa-save',
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onclick : function() { self._submit( form, options ) }
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}),
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'back': new Ui.ButtonIcon({
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icon : 'fa-caret-left',
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tooltip : 'Return to user preferences',
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title : 'Preferences',
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onclick : function() { form.remove(); self.$preferences.show(); }
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})
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}
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});
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self.$preferences.hide();
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self.$el.append( form.$el );
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}).fail( function( response ) {
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self.message.update( { message: 'Failed to load resource ' + page.url + '.', status: 'danger' } );
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})
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} else {
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page.onclick();
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}
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});
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},
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_submit: function( form, options ) {
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var self = this;
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$.ajax( {
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url : options.url,
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data : JSON.stringify(form.data.create()),
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type : 'PUT',
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contentType : 'application/json'
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}).done( function( response ) {
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var updated_values = false;
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form.data.matchModel( response, function ( input, input_id ) {
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form.field_list[ input_id ].value( input.value );
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updated_values = true;
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});
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if ( updated_values ) {
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form.message.update( { message: response.message, status: 'success' } );
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} else {
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form.remove();
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self.$preferences.show();
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self.message.update( { message: response.message, status: 'success' } );
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}
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}).fail( function( response ) {
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form.message.update( { message: response.responseJSON.err_msg, status: 'danger' } );
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});
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},
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_templateRow: function( options ) {
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return '<tr>' +
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'<td>' +
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'<div class="ui-panel-icon fa ' + options.icon + '">' +
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'</td>' +
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'<td>' +
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'<a class="ui-panel-anchor" href="javascript:void(0)">' + options.title + '</a>' +
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'<div class="ui-form-info">' + options.description + '</div>' +
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'</td>' +
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'</tr>';
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},
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_templateFooter: function( options ) {
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return '<p class="ui-panel-footer">' +
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'You are using <strong>' + options.nice_total_disk_usage + '</strong> of disk space in this Galaxy instance. ' +
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( Galaxy.config.enable_quotas ? 'Your disk quota is: <strong>' + options.quota + '</strong>. ' : '' ) +
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'Is your usage more than expected? See the <a href="https://wiki.galaxyproject.org/Learn/ManagingDatasets" target="_blank">documentation</a> for tips on how to find all of the data in your account.' +
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'</p>';
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}
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});
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return {
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View: View
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};
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});
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@@ -1732,7 +1732,6 @@ div.toolTitleNoSection
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}
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// communication channel bootstrap modal
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.chat-modal {
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overflow: hidden;
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}
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@@ -1758,7 +1757,7 @@ div.toolTitleNoSection
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}
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// password complexity monitor
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#change_password,#registrationForm {
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#change_password, #registrationForm {
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.progress {
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width:200px;
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margin-left: 20px;
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@@ -1767,5 +1766,4 @@ div.toolTitleNoSection
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color:black;
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text-align:left;
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}
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}
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}
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@@ -177,6 +177,25 @@
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padding-right: 3px !important;
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}
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// panel
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.ui-panel {
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.ui-panel-table {
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margin-left: 20px;
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margin-right: 20px;
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.ui-panel-icon {
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margin: 10px;
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margin-right: 20px;
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font-size: 1.6em;
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}
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.ui-panel-anchor {
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font-weight: bold;
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}
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||||
}
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||||
.ui-panel-footer {
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||||
margin-top: 10px;
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||||
}
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||||
}
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||||
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// tabs
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.ui-tabs {
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.tab-operations {
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||||
@@ -444,6 +463,7 @@
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||||
word-wrap: break-word;
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||||
display: inline;
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||||
vertical-align: middle;
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||||
font-weight: bold;
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||||
.portlet-title-text {
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||||
vertical-align: middle;
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||||
line-height: 22px;
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||||
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@@ -1004,6 +1004,9 @@ use_interactive = True
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# Enable new run workflow form
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#run_workflow_toolform_upgrade = True
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||||
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||||
# Enable new preferences which showcases new UI for the user preferences
|
||||
#enable_new_user_preferences = False
|
||||
|
||||
# Enable Galaxy to communicate directly with a sequencer
|
||||
#enable_sequencer_communication = False
|
||||
|
||||
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||||
File diff suppressed because one or more lines are too long
File diff suppressed because one or more lines are too long
@@ -61,7 +61,7 @@ class AuthManager(object):
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||||
if auth_result is True:
|
||||
break
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||||
if auth_result is None:
|
||||
message = 'Invalid email address/username or password'
|
||||
message = 'Invalid email address/username or password.'
|
||||
status = 'error'
|
||||
break
|
||||
elif allow_reg is True:
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||||
@@ -134,10 +134,10 @@ class AuthManager(object):
|
||||
if _get_bool(options, "allow-password-change", False):
|
||||
return (True, '') # accept user
|
||||
else:
|
||||
return (False, 'Password change not supported')
|
||||
return (False, 'Password change not supported.')
|
||||
elif auth_result is None:
|
||||
break # end authentication (skip rest)
|
||||
return (False, 'Invalid current password')
|
||||
return (False, 'Invalid current password.')
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||||
|
||||
def active_authenticators(self, email, username, password):
|
||||
"""Yields AuthProvider instances for the provided configfile that match the
|
||||
|
||||
@@ -98,8 +98,9 @@ class Configuration( object ):
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||||
self.tool_section_filters = listify( kwargs.get( "tool_section_filters", [] ), do_strip=True )
|
||||
|
||||
self.user_tool_filters = listify( kwargs.get( "user_tool_filters", [] ), do_strip=True )
|
||||
self.user_label_filters = listify( kwargs.get( "user_tool_label_filters", [] ), do_strip=True )
|
||||
self.user_section_filters = listify( kwargs.get( "user_tool_section_filters", [] ), do_strip=True )
|
||||
self.user_tool_label_filters = listify( kwargs.get( "user_tool_label_filters", [] ), do_strip=True )
|
||||
self.user_tool_section_filters = listify( kwargs.get( "user_tool_section_filters", [] ), do_strip=True )
|
||||
self.has_user_tool_filters = bool( self.user_tool_filters or self.user_tool_label_filters or self.user_tool_section_filters )
|
||||
|
||||
self.tour_config_dir = resolve_path( kwargs.get("tour_config_dir", "config/plugins/tours"), self.root)
|
||||
self.webhooks_dirs = resolve_path( kwargs.get("webhooks_dir", "config/plugins/webhooks"), self.root)
|
||||
@@ -220,6 +221,8 @@ class Configuration( object ):
|
||||
self.communication_server_host = kwargs.get( 'communication_server_host', 'http://localhost' )
|
||||
self.communication_server_port = int( kwargs.get( 'communication_server_port', '7070' ) )
|
||||
self.persistent_communication_rooms = listify( kwargs.get( "persistent_communication_rooms", [] ), do_strip=True )
|
||||
self.enable_openid = string_as_bool( kwargs.get( 'enable_openid', 'False' ) )
|
||||
self.enable_quotas = string_as_bool( kwargs.get( 'enable_quotas', 'False' ) )
|
||||
# External Service types used in sample tracking
|
||||
self.external_service_type_path = resolve_path( kwargs.get( 'external_service_type_path', 'external_service_types' ), self.root )
|
||||
# Tasked job runner.
|
||||
|
||||
@@ -33,50 +33,53 @@ class ConfigSerializer( base.ModelSerializer ):
|
||||
|
||||
self.serializers = {
|
||||
# TODO: this is available from user data, remove
|
||||
'is_admin_user' : lambda *a, **c: False,
|
||||
'is_admin_user' : lambda *a, **c: False,
|
||||
|
||||
'brand' : _defaults_to( '' ),
|
||||
'brand' : _defaults_to( '' ),
|
||||
# TODO: this doesn't seem right
|
||||
'logo_url' : lambda i, k, **c: self.url_for( i.get( k, '/' ) ),
|
||||
'logo_src' : lambda i, k, **c: self.url_for( '/static/images/galaxyIcon_noText.png' ),
|
||||
'terms_url' : _defaults_to( '' ),
|
||||
'logo_url' : lambda i, k, **c: self.url_for( i.get( k, '/' ) ),
|
||||
'logo_src' : lambda i, k, **c: self.url_for( '/static/images/galaxyIcon_noText.png' ),
|
||||
'terms_url' : _defaults_to( '' ),
|
||||
|
||||
# TODO: don't hardcode here - hardcode defaults once in config.py
|
||||
'wiki_url' : _defaults_to( "http://galaxyproject.org/" ),
|
||||
'search_url' : _defaults_to( "http://galaxyproject.org/search/usegalaxy/" ),
|
||||
'mailing_lists' : _defaults_to( "https://wiki.galaxyproject.org/MailingLists" ),
|
||||
'screencasts_url' : _defaults_to( "https://vimeo.com/galaxyproject" ),
|
||||
'citation_url' : _defaults_to( "https://wiki.galaxyproject.org/CitingGalaxy" ),
|
||||
'support_url' : _defaults_to( "https://wiki.galaxyproject.org/Support" ),
|
||||
'lims_doc_url' : _defaults_to( "https://usegalaxy.org/u/rkchak/p/sts" ),
|
||||
'biostar_url' : _defaults_to( '' ),
|
||||
'biostar_url_redirect' : lambda *a, **c: self.url_for( controller='biostar', action='biostar_redirect',
|
||||
qualified=True ),
|
||||
'wiki_url' : _defaults_to( "http://galaxyproject.org/" ),
|
||||
'search_url' : _defaults_to( "http://galaxyproject.org/search/usegalaxy/" ),
|
||||
'mailing_lists' : _defaults_to( "https://wiki.galaxyproject.org/MailingLists" ),
|
||||
'screencasts_url' : _defaults_to( "https://vimeo.com/galaxyproject" ),
|
||||
'citation_url' : _defaults_to( "https://wiki.galaxyproject.org/CitingGalaxy" ),
|
||||
'support_url' : _defaults_to( "https://wiki.galaxyproject.org/Support" ),
|
||||
'lims_doc_url' : _defaults_to( "https://usegalaxy.org/u/rkchak/p/sts" ),
|
||||
'biostar_url' : _defaults_to( '' ),
|
||||
'biostar_url_redirect' : lambda *a, **c: self.url_for( controller='biostar', action='biostar_redirect', qualified=True ),
|
||||
|
||||
'communication_server_host' : _defaults_to( None ),
|
||||
'communication_server_port' : _defaults_to( None ),
|
||||
'persistent_communication_rooms' : _defaults_to( None ),
|
||||
'allow_user_creation' : _defaults_to( False ),
|
||||
'use_remote_user' : _defaults_to( None ),
|
||||
'remote_user_logout_href' : _defaults_to( '' ),
|
||||
'datatypes_disable_auto' : _defaults_to( False ),
|
||||
'allow_user_dataset_purge' : _defaults_to( False ),
|
||||
'ga_code' : _defaults_to( None ),
|
||||
'enable_unique_workflow_defaults' : _defaults_to( False ),
|
||||
'enable_communication_server' : _defaults_to( False ),
|
||||
'communication_server_port' : _defaults_to( None ),
|
||||
'communication_server_host' : _defaults_to( None ),
|
||||
'persistent_communication_rooms' : _defaults_to( None ),
|
||||
'allow_user_creation' : _defaults_to( False ),
|
||||
'use_remote_user' : _defaults_to( None ),
|
||||
'enable_openid' : _defaults_to( False ),
|
||||
'enable_quotas' : _defaults_to( False ),
|
||||
'remote_user_logout_href' : _defaults_to( '' ),
|
||||
'datatypes_disable_auto' : _defaults_to( False ),
|
||||
'allow_user_dataset_purge' : _defaults_to( False ),
|
||||
'ga_code' : _defaults_to( None ),
|
||||
'enable_unique_workflow_defaults' : _defaults_to( False ),
|
||||
'has_user_tool_filters' : _defaults_to( False ),
|
||||
|
||||
# TODO: is there no 'correct' way to get an api url? controller='api', action='tools' is a hack
|
||||
# at any rate: the following works with path_prefix but is still brittle
|
||||
# TODO: change this to (more generic) upload_path and incorporate config.nginx_upload_path into building it
|
||||
'nginx_upload_path' : lambda i, k, **c: getattr( i, k, False ) or self.url_for( '/api/tools' ),
|
||||
'ftp_upload_dir' : _defaults_to( None ),
|
||||
'ftp_upload_site' : _defaults_to( None ),
|
||||
'version_major' : _defaults_to( None ),
|
||||
'require_login' : _defaults_to( None ),
|
||||
'inactivity_box_content' : _defaults_to( None ),
|
||||
'message_box_content' : _defaults_to( None ),
|
||||
'message_box_visible' : _defaults_to( False ),
|
||||
'message_box_class' : _defaults_to( 'info' ),
|
||||
'server_startttime' : lambda i, k, **c: server_starttime,
|
||||
'nginx_upload_path' : lambda i, k, **c: getattr( i, k, False ) or self.url_for( '/api/tools' ),
|
||||
'ftp_upload_dir' : _defaults_to( None ),
|
||||
'ftp_upload_site' : _defaults_to( None ),
|
||||
'version_major' : _defaults_to( None ),
|
||||
'require_login' : _defaults_to( None ),
|
||||
'inactivity_box_content' : _defaults_to( None ),
|
||||
'message_box_content' : _defaults_to( None ),
|
||||
'message_box_visible' : _defaults_to( False ),
|
||||
'message_box_class' : _defaults_to( 'info' ),
|
||||
'server_startttime' : lambda i, k, **c: server_starttime,
|
||||
}
|
||||
|
||||
|
||||
@@ -91,10 +94,10 @@ class AdminConfigSerializer( ConfigSerializer ):
|
||||
|
||||
self.serializers.update({
|
||||
# TODO: this is available from user serialization: remove
|
||||
'is_admin_user' : lambda *a: True,
|
||||
'is_admin_user' : lambda *a: True,
|
||||
|
||||
'library_import_dir' : _defaults_to( None ),
|
||||
'user_library_import_dir' : _defaults_to( None ),
|
||||
'allow_library_path_paste' : _defaults_to( False ),
|
||||
'allow_user_deletion' : _defaults_to( False ),
|
||||
'library_import_dir' : _defaults_to( None ),
|
||||
'user_library_import_dir' : _defaults_to( None ),
|
||||
'allow_library_path_paste' : _defaults_to( False ),
|
||||
'allow_user_deletion' : _defaults_to( False ),
|
||||
})
|
||||
|
||||
@@ -201,8 +201,9 @@ class UserManager( base.ModelManager, deletable.PurgableManagerMixin ):
|
||||
def default_permissions( self, user ):
|
||||
return self.app.security_agent.user_get_default_permissions( user )
|
||||
|
||||
def quota( self, user ):
|
||||
# TODO: use quota manager
|
||||
def quota( self, user, total=False ):
|
||||
if total:
|
||||
return self.app.quota_agent.get_quota( user, nice_size=True )
|
||||
return self.app.quota_agent.get_percent( user=user )
|
||||
|
||||
def tags_used( self, user, tag_models=None ):
|
||||
@@ -263,6 +264,7 @@ class UserSerializer( base.ModelSerializer, deletable.PurgableSerializerMixin ):
|
||||
'total_disk_usage',
|
||||
'nice_total_disk_usage',
|
||||
'quota_percent',
|
||||
'quota',
|
||||
'deleted',
|
||||
'purged',
|
||||
# 'active',
|
||||
@@ -288,6 +290,7 @@ class UserSerializer( base.ModelSerializer, deletable.PurgableSerializerMixin ):
|
||||
|
||||
'total_disk_usage' : lambda i, k, **c: float( i.total_disk_usage ),
|
||||
'quota_percent' : lambda i, k, **c: self.user_manager.quota( i ),
|
||||
'quota' : lambda i, k, **c: self.user_manager.quota( i, total=True ),
|
||||
|
||||
'tags_used' : lambda i, k, **c: self.user_manager.tags_used( i ),
|
||||
'has_requests' : lambda i, k, trans=None, **c: self.user_manager.has_requests( i, trans )
|
||||
|
||||
@@ -4208,6 +4208,21 @@ class FormDefinition( object, Dictifiable ):
|
||||
self.type = form_type
|
||||
self.layout = layout
|
||||
|
||||
def to_dict( self, user=None, values=None, security=None ):
|
||||
values = values or {}
|
||||
form_def = { 'id': security.encode_id( self.id ) if security else self.id, 'name': self.name, 'inputs': [] }
|
||||
for field in self.fields:
|
||||
FieldClass = ( { 'AddressField' : AddressField,
|
||||
'CheckboxField' : CheckboxField,
|
||||
'HistoryField' : HistoryField,
|
||||
'PasswordField' : PasswordField,
|
||||
'SelectField' : SelectField,
|
||||
'TextArea' : TextArea,
|
||||
'TextField' : TextField,
|
||||
'WorkflowField' : WorkflowField } ).get( field[ 'type' ], TextField )
|
||||
form_def[ 'inputs' ].append( FieldClass( user=user, value=values.get( field[ 'name' ], field[ 'default' ] ), security=security, **field ).to_dict() )
|
||||
return form_def
|
||||
|
||||
def grid_fields( self, grid_index ):
|
||||
# Returns a dictionary whose keys are integers corresponding to field positions
|
||||
# on the grid and whose values are the field.
|
||||
@@ -4278,13 +4293,11 @@ class FormDefinition( object, Dictifiable ):
|
||||
field_widget.params = params
|
||||
elif field_type == 'SelectField':
|
||||
for option in field[ 'selectlist' ]:
|
||||
|
||||
if option == value:
|
||||
field_widget.add_option( option, option, selected=True )
|
||||
else:
|
||||
field_widget.add_option( option, option )
|
||||
elif field_type == 'CheckboxField':
|
||||
|
||||
field_widget.set_checked( value )
|
||||
if field[ 'required' ] == 'required':
|
||||
req = 'Required'
|
||||
@@ -4294,10 +4307,7 @@ class FormDefinition( object, Dictifiable ):
|
||||
helptext = '%s (%s)' % ( field[ 'helptext' ], req )
|
||||
else:
|
||||
helptext = '(%s)' % req
|
||||
widgets.append( dict( label=field[ 'label' ],
|
||||
|
||||
widget=field_widget,
|
||||
helptext=helptext ) )
|
||||
widgets.append( dict( label=field[ 'label' ], widget=field_widget, helptext=helptext ) )
|
||||
return widgets
|
||||
|
||||
def field_as_html( self, field ):
|
||||
@@ -4832,6 +4842,18 @@ class UserAddress( object ):
|
||||
self.country = country
|
||||
self.phone = phone
|
||||
|
||||
def to_dict( self, trans ):
|
||||
return { 'id' : trans.security.encode_id( self.id ),
|
||||
'name' : sanitize_html( self.name ),
|
||||
'desc' : sanitize_html( self.desc ),
|
||||
'institution' : sanitize_html( self.institution ),
|
||||
'address' : sanitize_html( self.address ),
|
||||
'city' : sanitize_html( self.city ),
|
||||
'state' : sanitize_html( self.state ),
|
||||
'postal_code' : sanitize_html( self.postal_code ),
|
||||
'country' : sanitize_html( self.country ),
|
||||
'phone' : sanitize_html( self.phone ) }
|
||||
|
||||
def get_html(self):
|
||||
# This should probably be deprecated eventually. It should currently
|
||||
# sanitize.
|
||||
|
||||
@@ -25,8 +25,8 @@ class Action( object ):
|
||||
class RBACAgent:
|
||||
"""Class that handles galaxy security"""
|
||||
permitted_actions = Bunch(
|
||||
DATASET_MANAGE_PERMISSIONS=Action( "manage permissions", "Users having associated role can manage the roles associated with permissions on this dataset", "grant" ),
|
||||
DATASET_ACCESS=Action( "access", "Users having associated role can import this dataset into their history for analysis", "restrict" ),
|
||||
DATASET_MANAGE_PERMISSIONS=Action( "manage permissions", "Users having associated role can manage the roles associated with permissions on this dataset.", "grant" ),
|
||||
DATASET_ACCESS=Action( "access", "Users having associated role can import this dataset into their history for analysis.", "restrict" ),
|
||||
LIBRARY_ACCESS=Action( "access library", "Restrict access to this library to only users having associated role", "restrict" ),
|
||||
LIBRARY_ADD=Action( "add library item", "Users having associated role can add library items to this library item", "grant" ),
|
||||
LIBRARY_MODIFY=Action( "modify library item", "Users having associated role can modify this library item", "grant" ),
|
||||
|
||||
@@ -56,13 +56,13 @@ class FilterFactory( object ):
|
||||
def __init_filters( self, key, filters, toolbox_filters, validate=None ):
|
||||
for filter in filters:
|
||||
if validate is None or filter in validate or filter in self.default_filters:
|
||||
filter_function = self._build_filter_function( filter )
|
||||
filter_function = self.build_filter_function( filter )
|
||||
toolbox_filters[ key ].append( filter_function )
|
||||
else:
|
||||
log.warning( "Refusing to load %s filter '%s' which is not defined in config", key, filter )
|
||||
return toolbox_filters
|
||||
|
||||
def _build_filter_function( self, filter_name ):
|
||||
def build_filter_function( self, filter_name ):
|
||||
"""Obtain python function (importing a submodule if needed)
|
||||
corresponding to filter_name.
|
||||
"""
|
||||
|
||||
+119
-270
@@ -1,21 +1,24 @@
|
||||
"""
|
||||
Classes for generating HTML forms
|
||||
"""
|
||||
import os
|
||||
import time
|
||||
import logging
|
||||
|
||||
from six import string_types
|
||||
from operator import itemgetter
|
||||
from cgi import escape
|
||||
from galaxy.util import restore_text, relpath, nice_size, unicodify
|
||||
from galaxy.web import url_for
|
||||
from binascii import hexlify
|
||||
from galaxy.util import restore_text, unicodify
|
||||
|
||||
log = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class BaseField(object):
|
||||
def __init__( self, name, value=None, label=None, **kwds ):
|
||||
self.name = name
|
||||
self.label = label
|
||||
self.value = value
|
||||
self.disabled = kwds.get( 'disabled', False )
|
||||
self.optional = kwds.get( 'optional', True ) and kwds.get( 'required', 'optional' ) == 'optional'
|
||||
self.help = kwds.get( 'helptext' )
|
||||
|
||||
def get_html( self, prefix="" ):
|
||||
"""Returns the html widget corresponding to the parameter"""
|
||||
raise TypeError( "Abstract Method" )
|
||||
@@ -26,6 +29,16 @@ class BaseField(object):
|
||||
else:
|
||||
return ''
|
||||
|
||||
def to_dict( self ):
|
||||
return {
|
||||
'name' : self.name,
|
||||
'label' : self.label,
|
||||
'disabled' : self.disabled,
|
||||
'optional' : self.optional,
|
||||
'value' : self.value,
|
||||
'help' : self.help
|
||||
}
|
||||
|
||||
|
||||
class TextField(BaseField):
|
||||
"""
|
||||
@@ -36,20 +49,23 @@ class TextField(BaseField):
|
||||
>>> print TextField( "bins", size=4, value="default" ).get_html()
|
||||
<input type="text" name="bins" size="4" value="default">
|
||||
"""
|
||||
def __init__( self, name, size=None, value=None ):
|
||||
self.name = name
|
||||
def __init__( self, name, size=None, value=None, **kwds ):
|
||||
super( TextField, self ).__init__( name, value, **kwds )
|
||||
self.size = int( size or 10 )
|
||||
self.value = value or ""
|
||||
|
||||
def get_html( self, prefix="", disabled=False ):
|
||||
value = self.value
|
||||
value = unicodify( value )
|
||||
value = unicodify( self.value or "" )
|
||||
return unicodify( '<input type="text" name="%s%s" size="%d" value="%s"%s>'
|
||||
% ( prefix, self.name, self.size, escape( value, quote=True ), self.get_disabled_str( disabled ) ) )
|
||||
|
||||
def set_size(self, size):
|
||||
self.size = int( size )
|
||||
|
||||
def to_dict( self ):
|
||||
d = super( TextField, self ).to_dict()
|
||||
d[ 'type' ] = 'text'
|
||||
return d
|
||||
|
||||
|
||||
class PasswordField(BaseField):
|
||||
"""
|
||||
@@ -60,7 +76,8 @@ class PasswordField(BaseField):
|
||||
>>> print PasswordField( "bins", size=4, value="default" ).get_html()
|
||||
<input type="password" name="bins" size="4" value="default">
|
||||
"""
|
||||
def __init__( self, name, size=None, value=None ):
|
||||
def __init__( self, name, size=None, value=None, **kwds ):
|
||||
super( PasswordField, self ).__init__( name, value, **kwds )
|
||||
self.name = name
|
||||
self.size = int( size or 10 )
|
||||
self.value = value or ""
|
||||
@@ -72,6 +89,11 @@ class PasswordField(BaseField):
|
||||
def set_size(self, size):
|
||||
self.size = int( size )
|
||||
|
||||
def to_dict( self ):
|
||||
d = super( PasswordField, self ).to_dict()
|
||||
d[ 'type' ] = 'password'
|
||||
return d
|
||||
|
||||
|
||||
class TextArea(BaseField):
|
||||
"""
|
||||
@@ -84,7 +106,8 @@ class TextArea(BaseField):
|
||||
"""
|
||||
_DEFAULT_SIZE = "5x25"
|
||||
|
||||
def __init__( self, name, size=None, value=None ):
|
||||
def __init__( self, name, size=None, value=None, **kwds ):
|
||||
super( TextArea, self ).__init__( name, value, **kwds )
|
||||
self.name = name
|
||||
size = size or self._DEFAULT_SIZE
|
||||
self.size = size.split("x")
|
||||
@@ -100,6 +123,12 @@ class TextArea(BaseField):
|
||||
self.rows = rows
|
||||
self.cols = cols
|
||||
|
||||
def to_dict( self ):
|
||||
d = super( TextArea, self ).to_dict()
|
||||
d[ 'type' ] = 'text'
|
||||
d[ 'area' ] = True
|
||||
return d
|
||||
|
||||
|
||||
class CheckboxField(BaseField):
|
||||
"""
|
||||
@@ -111,7 +140,8 @@ class CheckboxField(BaseField):
|
||||
<input type="checkbox" id="bar" name="bar" value="__CHECKED__" checked="checked"><input type="hidden" name="bar" value="__NOTHING__">
|
||||
"""
|
||||
|
||||
def __init__( self, name, checked=None, refresh_on_change=False, refresh_on_change_values=None ):
|
||||
def __init__( self, name, checked=None, refresh_on_change=False, refresh_on_change_values=None, value=None, **kwds ):
|
||||
super( CheckboxField, self ).__init__( name, value, **kwds )
|
||||
self.name = name
|
||||
self.checked = ( checked is True ) or ( isinstance( checked, string_types ) and ( checked.lower() in ( "yes", "true", "on" ) ) )
|
||||
self.refresh_on_change = refresh_on_change
|
||||
@@ -134,7 +164,7 @@ class CheckboxField(BaseField):
|
||||
|
||||
@staticmethod
|
||||
def is_checked( value ):
|
||||
if value is True:
|
||||
if value in [ True, "true" ]:
|
||||
return True
|
||||
return isinstance( value, list ) and ( '__CHECKED__' in value or len( value ) == 2 )
|
||||
|
||||
@@ -144,6 +174,11 @@ class CheckboxField(BaseField):
|
||||
else:
|
||||
self.checked = value
|
||||
|
||||
def to_dict( self ):
|
||||
d = super( CheckboxField, self ).to_dict()
|
||||
d[ 'type' ] = 'boolean'
|
||||
return d
|
||||
|
||||
|
||||
class FileField(BaseField):
|
||||
"""
|
||||
@@ -155,7 +190,8 @@ class FileField(BaseField):
|
||||
<input type="file" name="foo" galaxy-ajax-upload="true">
|
||||
"""
|
||||
|
||||
def __init__( self, name, value=None, ajax=False ):
|
||||
def __init__( self, name, value=None, ajax=False, **kwds ):
|
||||
super( FileField, self ).__init__( name, value, **kwds )
|
||||
self.name = name
|
||||
self.ajax = ajax
|
||||
self.value = value
|
||||
@@ -170,72 +206,6 @@ class FileField(BaseField):
|
||||
return unicodify( '<input type="file" name="%s%s"%s%s>' % ( prefix, self.name, ajax_text, value_text ) )
|
||||
|
||||
|
||||
class FTPFileField(BaseField):
|
||||
"""
|
||||
An FTP file upload input.
|
||||
"""
|
||||
thead = '''
|
||||
<table id="grid-table" class="grid">
|
||||
<thead id="grid-table-header">
|
||||
<tr>
|
||||
<th id="select-header"></th>
|
||||
<th id="name-header">
|
||||
File
|
||||
</th>
|
||||
<th id="size-header">
|
||||
Size
|
||||
</th>
|
||||
<th id="date-header">
|
||||
Date
|
||||
</th>
|
||||
</tr>
|
||||
</thead>
|
||||
<tbody id="grid-table-body">
|
||||
'''
|
||||
trow = '''
|
||||
<tr>
|
||||
<td><input type="checkbox" name="%s%s" value="%s"/></td>
|
||||
<td>%s</td>
|
||||
<td>%s</td>
|
||||
<td>%s</td>
|
||||
</tr>
|
||||
'''
|
||||
tfoot = '''
|
||||
</tbody>
|
||||
</table>
|
||||
'''
|
||||
|
||||
def __init__( self, name, dir, ftp_site, value=None ):
|
||||
self.name = name
|
||||
self.dir = dir
|
||||
self.ftp_site = ftp_site
|
||||
self.value = value
|
||||
|
||||
def get_html( self, prefix="" ):
|
||||
rval = FTPFileField.thead
|
||||
if self.dir is None:
|
||||
rval += '<tr><td colspan="4"><em>Please <a href="%s">create</a> or <a href="%s">log in to</a> a Galaxy account to view files uploaded via FTP.</em></td></tr>' % ( url_for( controller='user', action='create', cntrller='user', referer=url_for( controller='root' ) ), url_for( controller='user', action='login', cntrller='user', referer=url_for( controller='root' ) ) )
|
||||
elif not os.path.exists( self.dir ):
|
||||
rval += '<tr><td colspan="4"><em>Your FTP upload directory contains no files.</em></td></tr>'
|
||||
else:
|
||||
uploads = []
|
||||
for ( dirpath, dirnames, filenames ) in os.walk( self.dir ):
|
||||
for filename in filenames:
|
||||
path = relpath( os.path.join( dirpath, filename ), self.dir )
|
||||
statinfo = os.lstat( os.path.join( dirpath, filename ) )
|
||||
uploads.append( dict( path=path,
|
||||
size=nice_size( statinfo.st_size ),
|
||||
ctime=time.strftime( "%m/%d/%Y %I:%M:%S %p", time.localtime( statinfo.st_ctime ) ) ) )
|
||||
if not uploads:
|
||||
rval += '<tr><td colspan="4"><em>Your FTP upload directory contains no files.</em></td></tr>'
|
||||
uploads = sorted(uploads, key=itemgetter("path"))
|
||||
for upload in uploads:
|
||||
rval += FTPFileField.trow % ( prefix, self.name, upload['path'], upload['path'], upload['size'], upload['ctime'] )
|
||||
rval += FTPFileField.tfoot
|
||||
rval += '<div class="toolParamHelp">This Galaxy server allows you to upload files via FTP. To upload some files, log in to the FTP server at <strong>%s</strong> using your Galaxy credentials (email address and password).</div>' % self.ftp_site
|
||||
return rval
|
||||
|
||||
|
||||
class HiddenField(BaseField):
|
||||
"""
|
||||
A hidden field.
|
||||
@@ -243,13 +213,20 @@ class HiddenField(BaseField):
|
||||
>>> print HiddenField( "foo", 100 ).get_html()
|
||||
<input type="hidden" name="foo" value="100">
|
||||
"""
|
||||
def __init__( self, name, value=None ):
|
||||
def __init__( self, name, value=None, **kwds ):
|
||||
super( HiddenField, self ).__init__( name, value, **kwds )
|
||||
self.name = name
|
||||
self.value = value or ""
|
||||
|
||||
def get_html( self, prefix="" ):
|
||||
return unicodify( '<input type="hidden" name="%s%s" value="%s">' % ( prefix, self.name, escape( str( self.value ), quote=True ) ) )
|
||||
|
||||
def to_dict( self ):
|
||||
d = super( HiddenField, self ).to_dict()
|
||||
d[ 'type' ] = 'hidden'
|
||||
d[ 'hidden' ] = True
|
||||
return d
|
||||
|
||||
|
||||
class SelectField(BaseField):
|
||||
"""
|
||||
@@ -288,10 +265,13 @@ class SelectField(BaseField):
|
||||
<div><input type="checkbox" name="bar" value="3" id="bar|3"><label class="inline" for="bar|3">automatic</label></div>
|
||||
<div><input type="checkbox" name="bar" value="4" id="bar|4" checked='checked'><label class="inline" for="bar|4">bazooty</label></div>
|
||||
"""
|
||||
def __init__( self, name, multiple=None, display=None, refresh_on_change=False, refresh_on_change_values=None, size=None, field_id=None ):
|
||||
def __init__( self, name, multiple=None, display=None, refresh_on_change=False, refresh_on_change_values=None, size=None, field_id=None, value=None, selectlist=None, **kwds ):
|
||||
super( SelectField, self ).__init__( name, value, **kwds )
|
||||
self.name = name
|
||||
self.field_id = field_id
|
||||
self.multiple = multiple or False
|
||||
self.selectlist = selectlist or []
|
||||
self.value = value
|
||||
self.size = size
|
||||
self.options = list()
|
||||
if display == "checkboxes":
|
||||
@@ -432,163 +412,33 @@ class SelectField(BaseField):
|
||||
return None
|
||||
|
||||
def to_dict( self ):
|
||||
return dict(
|
||||
name=self.name,
|
||||
multiple=self.multiple,
|
||||
options=self.options
|
||||
)
|
||||
|
||||
|
||||
class DrillDownField( BaseField ):
|
||||
"""
|
||||
A hierarchical select field, which allows users to 'drill down' a tree-like set of options.
|
||||
|
||||
>>> t = DrillDownField( "foo", multiple=True, display="checkbox", options=[{'name': 'Heading 1', 'value': 'heading1', 'options': [{'name': 'Option 1', 'value': 'option1', 'options': []}, {'name': 'Option 2', 'value': 'option2', 'options': []}, {'name': 'Heading 1', 'value': 'heading1', 'options': [{'name': 'Option 3', 'value': 'option3', 'options': []}, {'name': 'Option 4', 'value': 'option4', 'options': []}]}]}, {'name': 'Option 5', 'value': 'option5', 'options': []}] )
|
||||
>>> print t.get_html()
|
||||
<div class="form-row drilldown-container" id="drilldown--666f6f">
|
||||
<div class="form-row-input">
|
||||
<div><span class="form-toggle icon-button toggle-expand" id="drilldown--666f6f-68656164696e6731-click"></span>
|
||||
<input type="checkbox" name="foo" value="heading1" >Heading 1
|
||||
</div><div class="form-row" id="drilldown--666f6f-68656164696e6731-container" style="float: left; margin-left: 1em;">
|
||||
<div class="form-row-input">
|
||||
<input type="checkbox" name="foo" value="option1" >Option 1
|
||||
</div>
|
||||
<div class="form-row-input">
|
||||
<input type="checkbox" name="foo" value="option2" >Option 2
|
||||
</div>
|
||||
<div class="form-row-input">
|
||||
<div><span class="form-toggle icon-button toggle-expand" id="drilldown--666f6f-68656164696e6731-68656164696e6731-click"></span>
|
||||
<input type="checkbox" name="foo" value="heading1" >Heading 1
|
||||
</div><div class="form-row" id="drilldown--666f6f-68656164696e6731-68656164696e6731-container" style="float: left; margin-left: 1em;">
|
||||
<div class="form-row-input">
|
||||
<input type="checkbox" name="foo" value="option3" >Option 3
|
||||
</div>
|
||||
<div class="form-row-input">
|
||||
<input type="checkbox" name="foo" value="option4" >Option 4
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="form-row-input">
|
||||
<input type="checkbox" name="foo" value="option5" >Option 5
|
||||
</div>
|
||||
</div>
|
||||
>>> t = DrillDownField( "foo", multiple=False, display="radio", options=[{'name': 'Heading 1', 'value': 'heading1', 'options': [{'name': 'Option 1', 'value': 'option1', 'options': []}, {'name': 'Option 2', 'value': 'option2', 'options': []}, {'name': 'Heading 1', 'value': 'heading1', 'options': [{'name': 'Option 3', 'value': 'option3', 'options': []}, {'name': 'Option 4', 'value': 'option4', 'options': []}]}]}, {'name': 'Option 5', 'value': 'option5', 'options': []}] )
|
||||
>>> print t.get_html()
|
||||
<div class="form-row drilldown-container" id="drilldown--666f6f">
|
||||
<div class="form-row-input">
|
||||
<div><span class="form-toggle icon-button toggle-expand" id="drilldown--666f6f-68656164696e6731-click"></span>
|
||||
<input type="radio" name="foo" value="heading1" >Heading 1
|
||||
</div><div class="form-row" id="drilldown--666f6f-68656164696e6731-container" style="float: left; margin-left: 1em;">
|
||||
<div class="form-row-input">
|
||||
<input type="radio" name="foo" value="option1" >Option 1
|
||||
</div>
|
||||
<div class="form-row-input">
|
||||
<input type="radio" name="foo" value="option2" >Option 2
|
||||
</div>
|
||||
<div class="form-row-input">
|
||||
<div><span class="form-toggle icon-button toggle-expand" id="drilldown--666f6f-68656164696e6731-68656164696e6731-click"></span>
|
||||
<input type="radio" name="foo" value="heading1" >Heading 1
|
||||
</div><div class="form-row" id="drilldown--666f6f-68656164696e6731-68656164696e6731-container" style="float: left; margin-left: 1em;">
|
||||
<div class="form-row-input">
|
||||
<input type="radio" name="foo" value="option3" >Option 3
|
||||
</div>
|
||||
<div class="form-row-input">
|
||||
<input type="radio" name="foo" value="option4" >Option 4
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="form-row-input">
|
||||
<input type="radio" name="foo" value="option5" >Option 5
|
||||
</div>
|
||||
</div>
|
||||
"""
|
||||
|
||||
def __init__( self, name, multiple=None, display=None, refresh_on_change=False, options=[], value=[], refresh_on_change_values=[] ):
|
||||
self.name = name
|
||||
self.multiple = multiple or False
|
||||
self.options = options
|
||||
if value and not isinstance( value, list ):
|
||||
value = [ value ]
|
||||
elif not value:
|
||||
value = []
|
||||
self.value = value
|
||||
if display == "checkbox":
|
||||
assert multiple, "Checkbox display only supported for multiple select"
|
||||
elif display == "radio":
|
||||
assert not( multiple ), "Radio display only supported for single select"
|
||||
else:
|
||||
raise Exception( "Unknown display type: %s" % display )
|
||||
self.display = display
|
||||
self.refresh_on_change = refresh_on_change
|
||||
self.refresh_on_change_values = refresh_on_change_values
|
||||
if self.refresh_on_change:
|
||||
self.refresh_on_change_text = ' refresh_on_change="true"'
|
||||
if self.refresh_on_change_values:
|
||||
self.refresh_on_change_text = '%s refresh_on_change_values="%s"' % ( self.refresh_on_change_text, ",".join( self.refresh_on_change_values ) )
|
||||
else:
|
||||
self.refresh_on_change_text = ''
|
||||
|
||||
def get_html( self, prefix="" ):
|
||||
def find_expanded_options( expanded_options, options, parent_options=[] ):
|
||||
for option in options:
|
||||
if option['value'] in self.value:
|
||||
expanded_options.extend( parent_options )
|
||||
if option['options']:
|
||||
new_parents = list( parent_options ) + [ option['value'] ]
|
||||
find_expanded_options( expanded_options, option['options'], new_parents )
|
||||
|
||||
def recurse_options( html, options, base_id, expanded_options=[] ):
|
||||
for option in options:
|
||||
escaped_option_value = escape( str( option['value'] ), quote=True )
|
||||
selected = ( option['value'] in self.value )
|
||||
if selected:
|
||||
selected = ' checked'
|
||||
else:
|
||||
selected = ''
|
||||
span_class = 'form-toggle icon-button toggle'
|
||||
if option['value'] not in expanded_options:
|
||||
span_class = "%s-expand" % ( span_class )
|
||||
html.append( '<div class="form-row-input">')
|
||||
drilldown_group_id = "%s-%s" % ( base_id, hexlify( option['value'] ) )
|
||||
if option['options']:
|
||||
html.append( '<div><span class="%s" id="%s-click"></span>' % ( span_class, drilldown_group_id ) )
|
||||
html.append( '<input type="%s" name="%s%s" value="%s" %s>%s' % ( self.display, prefix, self.name, escaped_option_value, selected, option['name']) )
|
||||
if option['options']:
|
||||
html.append( '</div><div class="form-row" id="%s-container" style="float: left; margin-left: 1em;">' % ( drilldown_group_id ) )
|
||||
recurse_options( html, option['options'], drilldown_group_id, expanded_options )
|
||||
html.append( '</div>')
|
||||
html.append( '</div>')
|
||||
drilldown_id = "drilldown-%s-%s" % ( hexlify( prefix ), hexlify( self.name ) )
|
||||
rval = []
|
||||
rval.append( '<div class="form-row drilldown-container" id="%s">' % ( drilldown_id ) )
|
||||
expanded_options = []
|
||||
find_expanded_options( expanded_options, self.options )
|
||||
recurse_options( rval, self.options, drilldown_id, expanded_options )
|
||||
rval.append( '</div>' )
|
||||
return unicodify( '\n'.join( rval ) )
|
||||
d = super( SelectField, self ).to_dict()
|
||||
d[ 'type' ] = 'select'
|
||||
d[ 'display' ] = self.display
|
||||
d[ 'multiple' ] = self.multiple
|
||||
d[ 'data' ] = []
|
||||
for value in self.selectlist:
|
||||
d[ 'data' ].append( { 'label': value, 'value': value } )
|
||||
return d
|
||||
|
||||
|
||||
class AddressField(BaseField):
|
||||
@staticmethod
|
||||
def fields():
|
||||
return [ ( "short_desc", "Short address description", "Required" ),
|
||||
( "name", "Name", "Required" ),
|
||||
( "institution", "Institution", "Required" ),
|
||||
( "address", "Address", "Required" ),
|
||||
( "city", "City", "Required" ),
|
||||
( "state", "State/Province/Region", "Required" ),
|
||||
( "postal_code", "Postal Code", "Required" ),
|
||||
( "country", "Country", "Required" ),
|
||||
return [ ( "desc", "Short address description", "Required" ),
|
||||
( "name", "Name", "" ),
|
||||
( "institution", "Institution", "" ),
|
||||
( "address", "Address", "" ),
|
||||
( "city", "City", "" ),
|
||||
( "state", "State/Province/Region", "" ),
|
||||
( "postal_code", "Postal Code", "" ),
|
||||
( "country", "Country", "" ),
|
||||
( "phone", "Phone", "" ) ]
|
||||
|
||||
def __init__(self, name, user=None, value=None, params=None):
|
||||
self.name = name
|
||||
def __init__(self, name, user=None, value=None, params=None, security=None, **kwds):
|
||||
super( AddressField, self ).__init__( name, value, **kwds )
|
||||
self.user = user
|
||||
self.value = value
|
||||
self.security = security
|
||||
self.select_address = None
|
||||
self.params = params
|
||||
|
||||
@@ -643,12 +493,24 @@ class AddressField(BaseField):
|
||||
self.select_address.add_option( 'Add a new address', 'new' )
|
||||
return self.select_address.get_html( disabled=disabled ) + address_html
|
||||
|
||||
def to_dict( self ):
|
||||
d = super( AddressField, self ).to_dict()
|
||||
d[ 'type' ] = 'select'
|
||||
d[ 'data' ] = []
|
||||
if self.user and self.security:
|
||||
for a in self.user.addresses:
|
||||
if not a.deleted:
|
||||
d[ 'data' ].append( { 'label': a.desc, 'value': self.security.encode_id( a.id ) } )
|
||||
return d
|
||||
|
||||
|
||||
class WorkflowField( BaseField ):
|
||||
def __init__( self, name, user=None, value=None, params=None ):
|
||||
def __init__( self, name, user=None, value=None, params=None, security=None, **kwds ):
|
||||
super( WorkflowField, self ).__init__( name, value, **kwds )
|
||||
self.name = name
|
||||
self.user = user
|
||||
self.value = value
|
||||
self.security = security
|
||||
self.select_workflow = None
|
||||
self.params = params
|
||||
|
||||
@@ -667,8 +529,18 @@ class WorkflowField( BaseField ):
|
||||
self.select_workflow.add_option( a.name, str( a.id ) )
|
||||
return self.select_workflow.get_html( disabled=disabled )
|
||||
|
||||
def to_dict( self ):
|
||||
d = super( WorkflowField, self ).to_dict()
|
||||
d[ 'type' ] = 'select'
|
||||
d[ 'data' ] = []
|
||||
if self.user and self.security:
|
||||
for a in self.user.stored_workflows:
|
||||
if not a.deleted:
|
||||
d[ 'data' ].append( { 'label': a.name, 'value': self.security.encode_id( a.id ) } )
|
||||
return d
|
||||
|
||||
class WorkflowMappingField( BaseField):
|
||||
|
||||
class WorkflowMappingField( BaseField ):
|
||||
def __init__( self, name, user=None, value=None, params=None, **kwd ):
|
||||
# DBTODO integrate this with the new __build_workflow approach in requests_common. As it is, not particularly useful.
|
||||
self.name = name
|
||||
@@ -703,18 +575,14 @@ class WorkflowMappingField( BaseField):
|
||||
# Do something more appropriate here and allow selection of inputs
|
||||
return self.select_workflow.get_html( disabled=disabled ) + ''.join(['<div class="form-row"><label>%s</label>%s</div>' % (s[0], s[1].get_html()) for s in workflow_inputs])
|
||||
|
||||
def get_display_text(self):
|
||||
if self.value:
|
||||
return self.value
|
||||
else:
|
||||
return '-'
|
||||
|
||||
|
||||
class HistoryField( BaseField ):
|
||||
def __init__( self, name, user=None, value=None, params=None ):
|
||||
def __init__( self, name, user=None, value=None, params=None, security=None, **kwds ):
|
||||
super( HistoryField, self ).__init__( name, value, **kwds )
|
||||
self.name = name
|
||||
self.user = user
|
||||
self.value = value
|
||||
self.security = security
|
||||
self.select_history = None
|
||||
self.params = params
|
||||
|
||||
@@ -738,34 +606,15 @@ class HistoryField( BaseField ):
|
||||
self.select_history.add_option( a.name, str( a.id ) )
|
||||
return self.select_history.get_html( disabled=disabled )
|
||||
|
||||
def get_display_text(self):
|
||||
if self.value:
|
||||
return self.value
|
||||
else:
|
||||
return '-'
|
||||
|
||||
|
||||
class LibraryField( BaseField ):
|
||||
def __init__( self, name, value=None, trans=None ):
|
||||
self.name = name
|
||||
self.lddas = value
|
||||
self.trans = trans
|
||||
|
||||
def get_html( self, prefix="", disabled=False ):
|
||||
if not self.lddas:
|
||||
ldda_ids = ""
|
||||
text = "Select library dataset(s)"
|
||||
else:
|
||||
ldda_ids = "||".join( [ self.trans.security.encode_id( ldda.id ) for ldda in self.lddas ] )
|
||||
text = "<br />".join( [ "%s. %s" % (i + 1, ldda.name) for i, ldda in enumerate(self.lddas)] )
|
||||
return unicodify( '<a href="javascript:void(0);" class="add-librarydataset">%s</a> \
|
||||
<input type="hidden" name="%s%s" value="%s">' % ( text, prefix, self.name, escape( str(ldda_ids), quote=True ) ) )
|
||||
|
||||
def get_display_text(self):
|
||||
if self.ldda:
|
||||
return self.ldda.name
|
||||
else:
|
||||
return 'None'
|
||||
def to_dict( self ):
|
||||
d = super( HistoryField, self ).to_dict()
|
||||
d[ 'type' ] = 'select'
|
||||
d[ 'data' ] = [{ 'label': 'New History', 'value': 'new' }]
|
||||
if self.user and self.security:
|
||||
for a in self.user.histories:
|
||||
if not a.deleted:
|
||||
d[ 'data' ].append( { 'label': a.name, 'value': self.security.encode_id( a.id ) } )
|
||||
return d
|
||||
|
||||
|
||||
def get_suite():
|
||||
|
||||
@@ -3,10 +3,13 @@ API operations on User objects.
|
||||
"""
|
||||
|
||||
import logging
|
||||
import datetime
|
||||
import re
|
||||
|
||||
from sqlalchemy import false, true, or_
|
||||
from sqlalchemy import false, true, and_, or_
|
||||
|
||||
from galaxy import exceptions, util, web
|
||||
from galaxy.exceptions import MessageException
|
||||
from galaxy.managers import users
|
||||
from galaxy.security.validate_user_input import validate_email
|
||||
from galaxy.security.validate_user_input import validate_password
|
||||
@@ -17,11 +20,18 @@ from galaxy.web.base.controller import BaseAPIController
|
||||
from galaxy.web.base.controller import CreatesApiKeysMixin
|
||||
from galaxy.web.base.controller import CreatesUsersMixin
|
||||
from galaxy.web.base.controller import UsesTagsMixin
|
||||
from galaxy.web.base.controller import BaseUIController
|
||||
from galaxy.web.base.controller import UsesFormDefinitionsMixin
|
||||
from galaxy.web.form_builder import AddressField
|
||||
from galaxy.tools.toolbox.filters import FilterFactory
|
||||
from galaxy.util import docstring_trim, listify
|
||||
from galaxy.util.odict import odict
|
||||
|
||||
|
||||
log = logging.getLogger( __name__ )
|
||||
|
||||
|
||||
class UserAPIController( BaseAPIController, UsesTagsMixin, CreatesUsersMixin, CreatesApiKeysMixin ):
|
||||
class UserAPIController( BaseAPIController, UsesTagsMixin, CreatesUsersMixin, CreatesApiKeysMixin, BaseUIController, UsesFormDefinitionsMixin ):
|
||||
|
||||
def __init__(self, app):
|
||||
super(UserAPIController, self).__init__(app)
|
||||
@@ -110,8 +120,8 @@ class UserAPIController( BaseAPIController, UsesTagsMixin, CreatesUsersMixin, Cr
|
||||
@expose_api_anonymous
|
||||
def show( self, trans, id, deleted='False', **kwd ):
|
||||
"""
|
||||
GET /api/users/{encoded_user_id}
|
||||
GET /api/users/deleted/{encoded_user_id}
|
||||
GET /api/users/{encoded_id}
|
||||
GET /api/users/deleted/{encoded_id}
|
||||
GET /api/users/current
|
||||
Displays information about a user.
|
||||
"""
|
||||
@@ -164,17 +174,6 @@ class UserAPIController( BaseAPIController, UsesTagsMixin, CreatesUsersMixin, Cr
|
||||
'total_disk_usage': float } )
|
||||
return item
|
||||
|
||||
@expose_api
|
||||
@web.require_admin
|
||||
def api_key( self, trans, user_id, **kwd ):
|
||||
"""
|
||||
POST /api/users/{encoded_user_id}/api_key
|
||||
Creates a new API key for specified user.
|
||||
"""
|
||||
user = self.get_user( trans, user_id )
|
||||
key = self.create_api_key( trans, user )
|
||||
return key
|
||||
|
||||
@expose_api
|
||||
def update( self, trans, id, payload, **kwd ):
|
||||
"""
|
||||
@@ -240,3 +239,392 @@ class UserAPIController( BaseAPIController, UsesTagsMixin, CreatesUsersMixin, Cr
|
||||
return {'total_disk_usage': int( usage ),
|
||||
'nice_total_disk_usage': util.nice_size( usage ),
|
||||
'quota_percent': percent}
|
||||
|
||||
@expose_api
|
||||
def get_information(self, trans, id, **kwd):
|
||||
'''
|
||||
Returns user details such as public username, type, addresses, etc.
|
||||
'''
|
||||
user = self._get_user(trans, id)
|
||||
email = user.email
|
||||
username = user.username
|
||||
inputs = list()
|
||||
inputs.append({
|
||||
'id': 'email_input',
|
||||
'name': 'email',
|
||||
'type': 'text',
|
||||
'label': 'Email address',
|
||||
'value': email,
|
||||
'help': 'If you change your email address you will receive an activation link in the new mailbox and you have to activate your account by visiting it.'})
|
||||
if trans.webapp.name == 'galaxy':
|
||||
inputs.append({
|
||||
'id': 'name_input',
|
||||
'name': 'username',
|
||||
'type': 'text',
|
||||
'label': 'Public name',
|
||||
'value': username,
|
||||
'help': 'Your public name is an identifier that will be used to generate addresses for information you share publicly. Public names must be at least three characters in length and contain only lower-case letters, numbers, and the "-" character.'})
|
||||
info_form_models = self.get_all_forms(trans, filter=dict(deleted=False), form_type=trans.app.model.FormDefinition.types.USER_INFO)
|
||||
if info_form_models:
|
||||
info_form_id = trans.security.encode_id(user.values.form_definition.id) if user.values else None
|
||||
info_field = {
|
||||
'type': 'conditional',
|
||||
'name': 'info',
|
||||
'cases': [],
|
||||
'test_param': {
|
||||
'name': 'form_id',
|
||||
'label': 'User type',
|
||||
'type': 'select',
|
||||
'value': info_form_id,
|
||||
'help': '',
|
||||
'data': []
|
||||
}
|
||||
}
|
||||
for f in info_form_models:
|
||||
values = None
|
||||
if info_form_id == trans.security.encode_id(f.id) and user.values:
|
||||
values = user.values.content
|
||||
info_form = f.to_dict(user=user, values=values, security=trans.security)
|
||||
info_field['test_param']['data'].append({'label': info_form['name'], 'value': info_form['id']})
|
||||
info_field['cases'].append({'value': info_form['id'], 'inputs': info_form['inputs']})
|
||||
inputs.append(info_field)
|
||||
address_inputs = [{'type': 'hidden', 'name': 'id', 'hidden': True}]
|
||||
for field in AddressField.fields():
|
||||
address_inputs.append({'type': 'text', 'name': field[0], 'label': field[1], 'help': field[2]})
|
||||
address_repeat = {'title': 'Address', 'name': 'address', 'type': 'repeat', 'inputs': address_inputs, 'cache': []}
|
||||
address_values = [address.to_dict(trans) for address in user.addresses]
|
||||
for address in address_values:
|
||||
address_cache = []
|
||||
for input in address_inputs:
|
||||
input_copy = input.copy()
|
||||
input_copy['value'] = address.get(input['name'])
|
||||
address_cache.append(input_copy)
|
||||
address_repeat['cache'].append(address_cache)
|
||||
inputs.append(address_repeat)
|
||||
else:
|
||||
if user.active_repositories:
|
||||
inputs.append(dict(id='name_input', name='username', label='Public name:', type='hidden', value=username, help='You cannot change your public name after you have created a repository in this tool shed.'))
|
||||
else:
|
||||
inputs.append(dict(id='name_input', name='username', label='Public name:', type='text', value=username, help='Your public name provides a means of identifying you publicly within this tool shed. Public names must be at least three characters in length and contain only lower-case letters, numbers, and the "-" character. You cannot change your public name after you have created a repository in this tool shed.'))
|
||||
return {
|
||||
'email': email,
|
||||
'username': username,
|
||||
'addresses': [address.to_dict(trans) for address in user.addresses],
|
||||
'inputs': inputs,
|
||||
}
|
||||
|
||||
@expose_api
|
||||
def set_information(self, trans, id, payload={}, **kwd):
|
||||
'''
|
||||
Save a user's email address, public username, type, addresses etc.
|
||||
'''
|
||||
user = self._get_user(trans, id)
|
||||
email = payload.get('email')
|
||||
username = payload.get('username')
|
||||
if email or username:
|
||||
message = self._validate_email_publicname(email, username) or validate_email(trans, email, user)
|
||||
if not message and username:
|
||||
message = validate_publicname(trans, username, user)
|
||||
if message:
|
||||
raise MessageException(message)
|
||||
# Update user email and user's private role name which must match
|
||||
if user.email != email:
|
||||
private_role = trans.app.security_agent.get_private_user_role(user)
|
||||
private_role.name = email
|
||||
private_role.description = 'Private role for ' + email
|
||||
user.email = email
|
||||
trans.sa_session.add(private_role)
|
||||
if trans.app.config.user_activation_on:
|
||||
user.active = False
|
||||
if self.send_verification_email(trans, user.email, user.username):
|
||||
message = 'The login information has been updated with the changes.<br>Verification email has been sent to your new email address. Please verify it by clicking the activation link in the email.<br>Please check your spam/trash folder in case you cannot find the message.'
|
||||
else:
|
||||
message = 'Unable to send activation email, please contact your local Galaxy administrator.'
|
||||
if trans.app.config.error_email_to is not None:
|
||||
message += ' Contact: %s' % trans.app.config.error_email_to
|
||||
raise MessageException(message)
|
||||
# Update public name
|
||||
if user.username != username:
|
||||
user.username = username
|
||||
# Update user custom form
|
||||
user_info_form_id = payload.get('info|form_id')
|
||||
if user_info_form_id:
|
||||
prefix = 'info|'
|
||||
user_info_form = trans.sa_session.query(trans.app.model.FormDefinition).get(trans.security.decode_id(user_info_form_id))
|
||||
user_info_values = {}
|
||||
for item in payload:
|
||||
if item.startswith(prefix):
|
||||
user_info_values[item[len(prefix):]] = payload[item]
|
||||
form_values = trans.model.FormValues(user_info_form, user_info_values)
|
||||
trans.sa_session.add(form_values)
|
||||
user.values = form_values
|
||||
# Update user addresses
|
||||
address_dicts = {}
|
||||
address_count = 0
|
||||
for item in payload:
|
||||
match = re.match(r'^address_(?P<index>\d+)\|(?P<attribute>\S+)', item)
|
||||
if match:
|
||||
groups = match.groupdict()
|
||||
index = int(groups['index'])
|
||||
attribute = groups['attribute']
|
||||
address_dicts[index] = address_dicts.get(index) or {}
|
||||
address_dicts[index][attribute] = payload[item]
|
||||
address_count = max(address_count, index + 1)
|
||||
user.addresses = []
|
||||
for index in range(0, address_count):
|
||||
d = address_dicts[index]
|
||||
if d.get('id'):
|
||||
try:
|
||||
user_address = trans.sa_session.query(trans.app.model.UserAddress).get(trans.security.decode_id(d['id']))
|
||||
except Exception as e:
|
||||
raise MessageException('Failed to access user address (%s). %s' % (d['id'], e))
|
||||
else:
|
||||
user_address = trans.model.UserAddress()
|
||||
trans.log_event('User address added')
|
||||
for field in AddressField.fields():
|
||||
if str(field[2]).lower() == 'required' and not d.get(field[0]):
|
||||
raise MessageException('Address %s: %s (%s) required.' % (index + 1, field[1], field[0]))
|
||||
setattr(user_address, field[0], str(d.get(field[0], '')))
|
||||
user_address.user = user
|
||||
user.addresses.append(user_address)
|
||||
trans.sa_session.add(user_address)
|
||||
trans.sa_session.add(user)
|
||||
trans.sa_session.flush()
|
||||
trans.log_event('User information added')
|
||||
return {'message': 'User information has been saved.'}
|
||||
|
||||
def _validate_email_publicname(self, email, username):
|
||||
''' Validate email and username using regex '''
|
||||
if email == '' or not isinstance( email, basestring ):
|
||||
return 'Please provide your email address.'
|
||||
if not re.match('^[a-z0-9\-]{3,255}$', username):
|
||||
return 'Public name must contain only lowercase letters, numbers and "-". It also has to be shorter than 255 characters but longer than 2.'
|
||||
if not re.match('^(([^<>()[\]\\.,;:\s@\"]+(\.[^<>()[\]\\.,;:\s@\"]+)*)|(\".+\"))@((\[[0-9]{1,3}\.[0-9]{1,3}\.[0-9]{1,3}\.[0-9]{1,3}])|(([a-zA-Z\-0-9]+\.)+[a-zA-Z]{2,}))$', email):
|
||||
return 'Please provide your valid email address.'
|
||||
if len(email) > 255:
|
||||
return 'Email cannot be more than 255 characters in length.'
|
||||
|
||||
@expose_api
|
||||
def get_password(self, trans, id, payload={}, **kwd):
|
||||
"""
|
||||
Return available password inputs.
|
||||
"""
|
||||
return {'message': 'Password unchanged.',
|
||||
'inputs': [ {'name': 'current', 'type': 'password', 'label': 'Current password'},
|
||||
{'name': 'password', 'type': 'password', 'label': 'New password'},
|
||||
{'name': 'confirm', 'type': 'password', 'label': 'Confirm password'},
|
||||
{'name': 'token', 'type': 'hidden', 'hidden': True, 'ignore': None} ]}
|
||||
|
||||
@expose_api
|
||||
def set_password(self, trans, id, payload={}, **kwd):
|
||||
"""
|
||||
Allows to change a user password.
|
||||
"""
|
||||
password = payload.get('password')
|
||||
confirm = payload.get('confirm')
|
||||
current = payload.get('current')
|
||||
token = payload.get('token')
|
||||
token_result = None
|
||||
if token:
|
||||
# If a token was supplied, validate and set user
|
||||
token_result = trans.sa_session.query(trans.app.model.PasswordResetToken).get(token)
|
||||
if not token_result or not token_result.expiration_time > datetime.utcnow():
|
||||
raise MessageException('Invalid or expired password reset token, please request a new one.')
|
||||
user = token_result.user
|
||||
else:
|
||||
# The user is changing their own password, validate their current password
|
||||
user = self._get_user(trans, id)
|
||||
(ok, message) = trans.app.auth_manager.check_change_password(user, current)
|
||||
if not ok:
|
||||
raise MessageException(message)
|
||||
if user:
|
||||
# Validate the new password
|
||||
message = validate_password(trans, password, confirm)
|
||||
if message:
|
||||
raise MessageException(message)
|
||||
else:
|
||||
# Save new password
|
||||
user.set_password_cleartext(password)
|
||||
# if we used a token, invalidate it and log the user in.
|
||||
if token_result:
|
||||
trans.handle_user_login(token_result.user)
|
||||
token_result.expiration_time = datetime.utcnow()
|
||||
trans.sa_session.add(token_result)
|
||||
# Invalidate all other sessions
|
||||
for other_galaxy_session in trans.sa_session.query(trans.app.model.GalaxySession) \
|
||||
.filter(and_(trans.app.model.GalaxySession.table.c.user_id == user.id,
|
||||
trans.app.model.GalaxySession.table.c.is_valid == true(),
|
||||
trans.app.model.GalaxySession.table.c.id != trans.galaxy_session.id)):
|
||||
other_galaxy_session.is_valid = False
|
||||
trans.sa_session.add(other_galaxy_session)
|
||||
trans.sa_session.add(user)
|
||||
trans.sa_session.flush()
|
||||
trans.log_event('User change password')
|
||||
return {'message': 'Password has been saved.'}
|
||||
raise MessageException('Failed to determine user, access denied.')
|
||||
|
||||
@expose_api
|
||||
def get_permissions(self, trans, id, payload={}, **kwd):
|
||||
"""
|
||||
Get the user's default permissions for the new histories
|
||||
"""
|
||||
user = self._get_user(trans, id)
|
||||
roles = user.all_roles()
|
||||
permitted_actions = trans.app.model.Dataset.permitted_actions.items()
|
||||
inputs = []
|
||||
for index, action in permitted_actions:
|
||||
inputs.append({'type': 'select',
|
||||
'multiple': True,
|
||||
'optional': True,
|
||||
'name': index,
|
||||
'label': action.action,
|
||||
'help': action.description,
|
||||
'options': [(r.name, r.id) for r in roles],
|
||||
'value': [a.role.id for a in user.default_permissions if a.action == action.action]})
|
||||
return {'message': 'Permissions unchanged.', 'inputs': inputs}
|
||||
|
||||
@expose_api
|
||||
def set_permissions(self, trans, id, payload={}, **kwd):
|
||||
"""
|
||||
Set the user's default permissions for the new histories
|
||||
"""
|
||||
user = self._get_user(trans, id)
|
||||
permitted_actions = trans.app.model.Dataset.permitted_actions.items()
|
||||
permissions = {}
|
||||
for index, action in permitted_actions:
|
||||
action_id = trans.app.security_agent.get_action(action.action).action
|
||||
permissions[action_id] = [trans.sa_session.query(trans.app.model.Role).get(x) for x in (payload.get(index) or [])]
|
||||
trans.app.security_agent.user_set_default_permissions(user, permissions)
|
||||
return {'message': 'Permissions have been saved.'}
|
||||
|
||||
@expose_api
|
||||
def get_toolbox_filters(self, trans, id, payload={}, **kwd):
|
||||
"""
|
||||
API call for fetching toolbox filters data. Toolbox filters are specified in galaxy.ini.
|
||||
The user can activate them and the choice is stored in user_preferences.
|
||||
"""
|
||||
user = self._get_user(trans, id)
|
||||
filter_types = self._get_filter_types(trans)
|
||||
saved_values = {}
|
||||
for name, value in user.preferences.items():
|
||||
if name in filter_types:
|
||||
saved_values[name] = listify(value, do_strip=True)
|
||||
inputs = []
|
||||
factory = FilterFactory(trans.app.toolbox)
|
||||
for filter_type in filter_types:
|
||||
self._add_filter_inputs(factory, filter_types, inputs, filter_type, saved_values)
|
||||
return {'message': 'Toolbox filters unchanged.', 'inputs': inputs}
|
||||
|
||||
@expose_api
|
||||
def set_toolbox_filters(self, trans, id, payload={}, **kwd):
|
||||
"""
|
||||
API call to update toolbox filters data.
|
||||
"""
|
||||
user = self._get_user(trans, id)
|
||||
filter_types = self._get_filter_types(trans)
|
||||
for filter_type in filter_types:
|
||||
new_filters = []
|
||||
for prefixed_name in payload:
|
||||
prefix = filter_type + '|'
|
||||
if prefixed_name.startswith(filter_type):
|
||||
new_filters.append(prefixed_name[len(prefix):])
|
||||
user.preferences[filter_type] = ','.join(new_filters)
|
||||
trans.sa_session.add(user)
|
||||
trans.sa_session.flush()
|
||||
return {'message': 'Toolbox filters have been saved.'}
|
||||
|
||||
def _add_filter_inputs(self, factory, filter_types, inputs, filter_type, saved_values):
|
||||
filter_inputs = list()
|
||||
filter_values = saved_values.get(filter_type, [])
|
||||
filter_config = filter_types[filter_type]['config']
|
||||
filter_title = filter_types[filter_type]['title']
|
||||
for filter_name in filter_config:
|
||||
function = factory.build_filter_function(filter_name)
|
||||
filter_inputs.append({
|
||||
'type': 'boolean',
|
||||
'name': filter_name,
|
||||
'label': filter_name,
|
||||
'help': docstring_trim(function.__doc__) or 'No description available.',
|
||||
'value': 'true' if filter_name in filter_values else 'false',
|
||||
'ignore': 'false'
|
||||
})
|
||||
if filter_inputs:
|
||||
inputs.append({'type': 'section', 'title': filter_title, 'name': filter_type, 'expanded': True, 'inputs': filter_inputs})
|
||||
|
||||
def _get_filter_types(self, trans):
|
||||
return odict([('toolbox_tool_filters', {'title': 'Tools', 'config': trans.app.config.user_tool_filters}),
|
||||
('toolbox_tool_section_filters', {'title': 'Sections', 'config': trans.app.config.user_tool_section_filters}),
|
||||
('toolbox_tool_label_filters', {'title': 'Labels', 'config': trans.app.config.user_tool_label_filters})])
|
||||
|
||||
@expose_api
|
||||
def api_key(self, trans, id, payload={}, **kwd):
|
||||
"""
|
||||
Create API key.
|
||||
"""
|
||||
user = self._get_user(trans, id)
|
||||
return self.create_api_key(trans, user)
|
||||
|
||||
@expose_api
|
||||
def get_api_key(self, trans, id, payload={}, **kwd):
|
||||
"""
|
||||
Get API key inputs.
|
||||
"""
|
||||
user = self._get_user(trans, id)
|
||||
return self._build_inputs_api_key(user)
|
||||
|
||||
@expose_api
|
||||
def set_api_key(self, trans, id, payload={}, **kwd):
|
||||
"""
|
||||
Get API key inputs with new API key.
|
||||
"""
|
||||
user = self._get_user(trans, id)
|
||||
self.create_api_key(trans, user)
|
||||
return self._build_inputs_api_key(user, message='Generated a new web API key.')
|
||||
|
||||
def _build_inputs_api_key(self, user, message='' ):
|
||||
"""
|
||||
Build API key inputs.
|
||||
"""
|
||||
inputs = [{'name': 'api-key',
|
||||
'type': 'text',
|
||||
'label': 'Current API key:',
|
||||
'value': user.api_keys[0].key if user.api_keys else 'Not available.',
|
||||
'readonly': True,
|
||||
'help': ' An API key will allow you to access via web API. Please note that this key acts as an alternate means to access your account and should be treated with the same care as your login password.'}]
|
||||
return {'message': message, 'inputs': inputs}
|
||||
|
||||
@expose_api
|
||||
def get_communication(self, trans, id, payload={}, **kwd):
|
||||
"""
|
||||
Build communication server inputs.
|
||||
"""
|
||||
user = self._get_user(trans, id)
|
||||
return {'message': 'Communication server settings unchanged.',
|
||||
'inputs': [{'name': 'enable',
|
||||
'type': 'boolean',
|
||||
'label': 'Enable communication',
|
||||
'value': user.preferences.get('communication_server', 'false')}]}
|
||||
|
||||
@expose_api
|
||||
def set_communication(self, trans, id, payload={}, **kwd):
|
||||
"""
|
||||
Allows the user to activate/deactivate the communication server.
|
||||
"""
|
||||
user = self._get_user(trans, id)
|
||||
enable = payload.get('enable', 'false')
|
||||
if enable == 'true':
|
||||
message = 'Your communication server has been activated.'
|
||||
else:
|
||||
message = 'Your communication server has been disabled.'
|
||||
user.preferences['communication_server'] = enable
|
||||
trans.sa_session.add(user)
|
||||
trans.sa_session.flush()
|
||||
return {'message': message}
|
||||
|
||||
def _get_user(self, trans, id):
|
||||
user = self.get_user(trans, id)
|
||||
if not user:
|
||||
raise MessageException('Invalid user (%s).' % id)
|
||||
if user != trans.user and not trans.user_is_admin():
|
||||
raise MessageException('Access denied.')
|
||||
return user
|
||||
|
||||
@@ -71,6 +71,7 @@ def paste_app_factory( global_conf, **kwargs ):
|
||||
|
||||
webapp.add_client_route( '/tours' )
|
||||
webapp.add_client_route( '/tours/{tour_id}' )
|
||||
webapp.add_client_route( '/users' )
|
||||
|
||||
# STANDARD CONTROLLER ROUTES
|
||||
webapp.add_ui_controllers( 'galaxy.webapps.galaxy.controllers', app )
|
||||
@@ -327,10 +328,6 @@ def populate_api_routes( webapp, app ):
|
||||
"/api/histories/{id}/exports/{jeha_id}", controller="histories",
|
||||
action="archive_download", conditions=dict( method=[ "GET" ] ) )
|
||||
|
||||
webapp.mapper.connect( "create_api_key", "/api/users/{user_id}/api_key",
|
||||
controller="users", action="api_key", user_id=None,
|
||||
conditions=dict( method=["POST"] ) )
|
||||
|
||||
# ---- visualizations registry ---- generic template renderer
|
||||
# @deprecated: this route should be considered deprecated
|
||||
webapp.add_route( '/visualization/show/{visualization_name}', controller='visualization', action='render', visualization_name=None )
|
||||
@@ -462,6 +459,88 @@ def populate_api_routes( webapp, app ):
|
||||
action='update_tour',
|
||||
conditions=dict( method=[ "POST" ] ) )
|
||||
|
||||
# ================================
|
||||
# ===== USERS API =====
|
||||
# ================================
|
||||
|
||||
webapp.mapper.connect( 'api_key',
|
||||
'/api/users/{id}/api_key',
|
||||
controller='users',
|
||||
action='api_key',
|
||||
conditions=dict( method=["POST"] ) )
|
||||
|
||||
webapp.mapper.connect( 'get_api_key',
|
||||
'/api/users/{id}/api_key/inputs',
|
||||
controller='users',
|
||||
action='get_api_key',
|
||||
conditions=dict( method=["GET"] ) )
|
||||
|
||||
webapp.mapper.connect( 'set_api_key',
|
||||
'/api/users/{id}/api_key/inputs',
|
||||
controller='users',
|
||||
action='set_api_key',
|
||||
conditions=dict( method=["PUT"] ) )
|
||||
|
||||
webapp.mapper.connect( 'get_information',
|
||||
'/api/users/{id}/information/inputs',
|
||||
controller='users',
|
||||
action='get_information',
|
||||
conditions=dict( method=["GET"] ) )
|
||||
|
||||
webapp.mapper.connect( 'set_information',
|
||||
'/api/users/{id}/information/inputs',
|
||||
controller='users',
|
||||
action='set_information',
|
||||
conditions=dict( method=["PUT"] ) )
|
||||
|
||||
webapp.mapper.connect( 'get_password',
|
||||
'/api/users/{id}/password/inputs',
|
||||
controller='users',
|
||||
action='get_password',
|
||||
conditions=dict( method=["GET"] ) )
|
||||
|
||||
webapp.mapper.connect( 'set_password',
|
||||
'/api/users/{id}/password/inputs',
|
||||
controller='users',
|
||||
action='set_password',
|
||||
conditions=dict( method=["PUT"] ) )
|
||||
|
||||
webapp.mapper.connect( 'get_permissions',
|
||||
'/api/users/{id}/permissions/inputs',
|
||||
controller='users',
|
||||
action='get_permissions',
|
||||
conditions=dict( method=["GET"] ) )
|
||||
|
||||
webapp.mapper.connect( 'set_permissions',
|
||||
'/api/users/{id}/permissions/inputs',
|
||||
controller='users',
|
||||
action='set_permissions',
|
||||
conditions=dict( method=["PUT"] ) )
|
||||
|
||||
webapp.mapper.connect( 'get_toolbox_filters',
|
||||
'/api/users/{id}/toolbox_filters/inputs',
|
||||
controller='users',
|
||||
action='get_toolbox_filters',
|
||||
conditions=dict( method=["GET"] ) )
|
||||
|
||||
webapp.mapper.connect( 'set_toolbox_filters',
|
||||
'/api/users/{id}/toolbox_filters/inputs',
|
||||
controller='users',
|
||||
action='set_toolbox_filters',
|
||||
conditions=dict( method=["PUT"] ) )
|
||||
|
||||
webapp.mapper.connect( 'get_communication',
|
||||
'/api/users/{id}/communication/inputs',
|
||||
controller='users',
|
||||
action='get_communication',
|
||||
conditions=dict( method=["GET"] ) )
|
||||
|
||||
webapp.mapper.connect( 'set_communication',
|
||||
'/api/users/{id}/communication/inputs',
|
||||
controller='users',
|
||||
action='set_communication',
|
||||
conditions=dict( method=["PUT"] ) )
|
||||
|
||||
# ========================
|
||||
# ===== WEBHOOKS API =====
|
||||
# ========================
|
||||
|
||||
@@ -12,25 +12,23 @@ from datetime import datetime, timedelta
|
||||
from json import dumps, loads
|
||||
|
||||
from markupsafe import escape
|
||||
from sqlalchemy import and_, or_, true, func
|
||||
from sqlalchemy import or_, func
|
||||
|
||||
from galaxy import model
|
||||
from galaxy import util
|
||||
from galaxy import web
|
||||
from galaxy.util import string_as_bool
|
||||
from galaxy.exceptions import ObjectInvalid
|
||||
from galaxy.security.validate_user_input import (transform_publicname,
|
||||
validate_email,
|
||||
validate_password,
|
||||
validate_publicname)
|
||||
from galaxy.tools.toolbox.filters import FilterFactory
|
||||
from galaxy.util import biostar, hash_util, docstring_trim, listify
|
||||
from galaxy.util import biostar, hash_util
|
||||
from galaxy.web import url_for
|
||||
from galaxy.web.base.controller import (BaseUIController,
|
||||
CreatesApiKeysMixin,
|
||||
CreatesUsersMixin,
|
||||
UsesFormDefinitionsMixin)
|
||||
from galaxy.web.form_builder import build_select_field, CheckboxField
|
||||
from galaxy.web.form_builder import CheckboxField
|
||||
from galaxy.web.framework.helpers import grids, time_ago
|
||||
|
||||
log = logging.getLogger( __name__ )
|
||||
@@ -78,10 +76,6 @@ class User( BaseUIController, UsesFormDefinitionsMixin, CreatesUsersMixin, Creat
|
||||
user_openid_grid = UserOpenIDGrid()
|
||||
installed_len_files = None
|
||||
|
||||
@web.expose
|
||||
def index( self, trans, cntrller='user', **kwd ):
|
||||
return trans.fill_template( '/user/index.mako', cntrller=cntrller )
|
||||
|
||||
@web.expose
|
||||
def openid_auth( self, trans, **kwd ):
|
||||
'''Handles user request to access an OpenID provider'''
|
||||
@@ -370,17 +364,6 @@ class User( BaseUIController, UsesFormDefinitionsMixin, CreatesUsersMixin, Creat
|
||||
else:
|
||||
message = error
|
||||
status = 'error'
|
||||
if trans.webapp.name == 'galaxy':
|
||||
user_type_form_definition = self.__get_user_type_form_definition( trans, user=user, **kwd )
|
||||
user_type_fd_id = params.get( 'user_type_fd_id', 'none' )
|
||||
if user_type_fd_id == 'none' and user_type_form_definition is not None:
|
||||
user_type_fd_id = trans.security.encode_id( user_type_form_definition.id )
|
||||
user_type_fd_id_select_field = self.__build_user_type_fd_id_select_field( trans, selected_value=user_type_fd_id )
|
||||
widgets = self.__get_widgets( trans, user_type_form_definition, user=user, **kwd )
|
||||
else:
|
||||
user_type_fd_id_select_field = None
|
||||
user_type_form_definition = None
|
||||
widgets = []
|
||||
return trans.fill_template( '/user/openid_associate.mako',
|
||||
cntrller=cntrller,
|
||||
email=email,
|
||||
@@ -395,9 +378,6 @@ class User( BaseUIController, UsesFormDefinitionsMixin, CreatesUsersMixin, Creat
|
||||
status=status,
|
||||
active_view="user",
|
||||
subscribe_checked=False,
|
||||
user_type_fd_id_select_field=user_type_fd_id_select_field,
|
||||
user_type_form_definition=user_type_form_definition,
|
||||
widgets=widgets,
|
||||
openids=openids )
|
||||
|
||||
@web.expose
|
||||
@@ -733,27 +713,15 @@ class User( BaseUIController, UsesFormDefinitionsMixin, CreatesUsersMixin, Creat
|
||||
else:
|
||||
status = 'error'
|
||||
if trans.webapp.name == 'galaxy':
|
||||
user_type_form_definition = self.__get_user_type_form_definition( trans, user=None, **kwd )
|
||||
user_type_fd_id = params.get( 'user_type_fd_id', 'none' )
|
||||
if user_type_fd_id == 'none' and user_type_form_definition is not None:
|
||||
user_type_fd_id = trans.security.encode_id( user_type_form_definition.id )
|
||||
user_type_fd_id_select_field = self.__build_user_type_fd_id_select_field( trans, selected_value=user_type_fd_id )
|
||||
widgets = self.__get_widgets( trans, user_type_form_definition, user=None, **kwd )
|
||||
# Warning message that is shown on the registration page.
|
||||
registration_warning_message = trans.app.config.registration_warning_message
|
||||
else:
|
||||
user_type_fd_id_select_field = None
|
||||
user_type_form_definition = None
|
||||
widgets = []
|
||||
registration_warning_message = None
|
||||
return trans.fill_template( '/user/register.mako',
|
||||
cntrller=cntrller,
|
||||
email=email,
|
||||
username=transform_publicname( trans, username ),
|
||||
subscribe_checked=subscribe_checked,
|
||||
user_type_fd_id_select_field=user_type_fd_id_select_field,
|
||||
user_type_form_definition=user_type_form_definition,
|
||||
widgets=widgets,
|
||||
use_panels=use_panels,
|
||||
redirect=redirect,
|
||||
redirect_url=redirect_url,
|
||||
@@ -773,22 +741,6 @@ class User( BaseUIController, UsesFormDefinitionsMixin, CreatesUsersMixin, Creat
|
||||
error = ''
|
||||
success = True
|
||||
if trans.webapp.name == 'galaxy':
|
||||
# Save other information associated with the user, if any
|
||||
user_info_forms = self.get_all_forms( trans,
|
||||
filter=dict( deleted=False ),
|
||||
form_type=trans.app.model.FormDefinition.types.USER_INFO )
|
||||
# If there are no user forms available then there is nothing to save
|
||||
if user_info_forms:
|
||||
user_type_fd_id = kwd.get( 'user_type_fd_id', 'none' )
|
||||
if user_type_fd_id not in [ 'none' ]:
|
||||
user_type_form_definition = trans.sa_session.query( trans.app.model.FormDefinition ).get( trans.security.decode_id( user_type_fd_id ) )
|
||||
values = self.get_form_values( trans, user, user_type_form_definition, **kwd )
|
||||
form_values = trans.app.model.FormValues( user_type_form_definition, values )
|
||||
trans.sa_session.add( form_values )
|
||||
trans.sa_session.flush()
|
||||
user.values = form_values
|
||||
trans.sa_session.add( user )
|
||||
trans.sa_session.flush()
|
||||
if subscribe_checked:
|
||||
# subscribe user to email list
|
||||
if trans.app.config.smtp_server is None:
|
||||
@@ -917,320 +869,6 @@ class User( BaseUIController, UsesFormDefinitionsMixin, CreatesUsersMixin, Creat
|
||||
return trans.show_error_message( "You are using an invalid activation link. Try to log in and we will send you a new activation email. <br><a href='%s'>Go to login page.</a>" ) % web.url_for( controller='root', action='index' )
|
||||
return
|
||||
|
||||
def __get_user_type_form_definition( self, trans, user=None, **kwd ):
|
||||
params = util.Params( kwd )
|
||||
if user and user.values:
|
||||
user_type_fd_id = trans.security.encode_id( user.values.form_definition.id )
|
||||
else:
|
||||
user_type_fd_id = params.get( 'user_type_fd_id', 'none' )
|
||||
if user_type_fd_id not in [ 'none' ]:
|
||||
user_type_form_definition = trans.sa_session.query( trans.app.model.FormDefinition ).get( trans.security.decode_id( user_type_fd_id ) )
|
||||
else:
|
||||
user_type_form_definition = None
|
||||
return user_type_form_definition
|
||||
|
||||
def __get_widgets( self, trans, user_type_form_definition, user=None, **kwd ):
|
||||
widgets = []
|
||||
if user_type_form_definition:
|
||||
if user:
|
||||
if user.values:
|
||||
widgets = user_type_form_definition.get_widgets( user=user,
|
||||
contents=user.values.content,
|
||||
**kwd )
|
||||
else:
|
||||
widgets = user_type_form_definition.get_widgets( None, contents={}, **kwd )
|
||||
else:
|
||||
widgets = user_type_form_definition.get_widgets( None, contents={}, **kwd )
|
||||
return widgets
|
||||
|
||||
@web.expose
|
||||
def manage_user_info( self, trans, cntrller, **kwd ):
|
||||
'''Manage a user's login, password, public username, type, addresses, etc.'''
|
||||
params = util.Params( kwd )
|
||||
user_id = params.get( 'id', None )
|
||||
if user_id:
|
||||
user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( user_id ) )
|
||||
else:
|
||||
user = trans.user
|
||||
if not user:
|
||||
raise AssertionError("The user id (%s) is not valid" % str( user_id ))
|
||||
email = util.restore_text( params.get( 'email', user.email ) )
|
||||
username = util.restore_text( params.get( 'username', '' ) )
|
||||
if not username:
|
||||
username = user.username
|
||||
message = escape( util.restore_text( params.get( 'message', '' ) ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
if trans.webapp.name == 'galaxy':
|
||||
user_type_form_definition = self.__get_user_type_form_definition( trans, user=user, **kwd )
|
||||
user_type_fd_id = params.get( 'user_type_fd_id', 'none' )
|
||||
if user_type_fd_id == 'none' and user_type_form_definition is not None:
|
||||
user_type_fd_id = trans.security.encode_id( user_type_form_definition.id )
|
||||
user_type_fd_id_select_field = self.__build_user_type_fd_id_select_field( trans, selected_value=user_type_fd_id )
|
||||
widgets = self.__get_widgets( trans, user_type_form_definition, user=user, **kwd )
|
||||
# user's addresses
|
||||
show_filter = util.restore_text( params.get( 'show_filter', 'Active' ) )
|
||||
if show_filter == 'All':
|
||||
addresses = [address for address in user.addresses]
|
||||
elif show_filter == 'Deleted':
|
||||
addresses = [address for address in user.addresses if address.deleted]
|
||||
else:
|
||||
addresses = [address for address in user.addresses if not address.deleted]
|
||||
user_info_forms = self.get_all_forms( trans,
|
||||
filter=dict( deleted=False ),
|
||||
form_type=trans.app.model.FormDefinition.types.USER_INFO )
|
||||
return trans.fill_template( '/webapps/galaxy/user/manage_info.mako',
|
||||
cntrller=cntrller,
|
||||
user=user,
|
||||
email=email,
|
||||
username=username,
|
||||
user_type_fd_id_select_field=user_type_fd_id_select_field,
|
||||
user_info_forms=user_info_forms,
|
||||
user_type_form_definition=user_type_form_definition,
|
||||
user_type_fd_id=user_type_fd_id,
|
||||
widgets=widgets,
|
||||
addresses=addresses,
|
||||
show_filter=show_filter,
|
||||
message=message,
|
||||
status=status )
|
||||
else:
|
||||
return trans.fill_template( '/webapps/tool_shed/user/manage_info.mako',
|
||||
cntrller=cntrller,
|
||||
user=user,
|
||||
email=email,
|
||||
username=username,
|
||||
message=message,
|
||||
status=status )
|
||||
|
||||
# For REMOTE_USER, we need the ability to just edit the username
|
||||
@web.expose
|
||||
@web.require_login( "to manage the public name" )
|
||||
def edit_username( self, trans, cntrller, **kwd ):
|
||||
params = util.Params( kwd )
|
||||
is_admin = cntrller == 'admin' and trans.user_is_admin()
|
||||
message = util.restore_text( params.get( 'message', '' ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
user_id = params.get( 'user_id', None )
|
||||
if user_id and is_admin:
|
||||
user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( user_id ) )
|
||||
else:
|
||||
user = trans.user
|
||||
if user and params.get( 'change_username_button', False ):
|
||||
username = kwd.get( 'username', '' )
|
||||
if username:
|
||||
message = validate_publicname( trans, username, user )
|
||||
if message:
|
||||
status = 'error'
|
||||
else:
|
||||
user.username = username
|
||||
trans.sa_session.add( user )
|
||||
trans.sa_session.flush()
|
||||
message = 'The username has been updated with the changes.'
|
||||
return trans.fill_template( '/user/username.mako',
|
||||
cntrller=cntrller,
|
||||
user=user,
|
||||
username=user.username,
|
||||
message=message,
|
||||
status=status )
|
||||
|
||||
@web.expose
|
||||
def edit_info( self, trans, cntrller, **kwd ):
|
||||
"""
|
||||
Edit user information = username, email or password.
|
||||
"""
|
||||
params = util.Params( kwd )
|
||||
is_admin = cntrller == 'admin' and trans.user_is_admin()
|
||||
message = util.restore_text( params.get( 'message', '' ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
user_id = params.get( 'user_id', None )
|
||||
if user_id and is_admin:
|
||||
user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( user_id ) )
|
||||
elif user_id and ( not trans.user or trans.user.id != trans.security.decode_id( user_id ) ):
|
||||
message = 'Invalid user id'
|
||||
status = 'error'
|
||||
user = None
|
||||
else:
|
||||
user = trans.user
|
||||
if user and params.get( 'login_info_button', False ):
|
||||
# Editing email and username
|
||||
email = util.restore_text( params.get( 'email', '' ) )
|
||||
username = util.restore_text( params.get( 'username', '' ) ).lower()
|
||||
|
||||
# Validate the new values for email and username
|
||||
message = validate_email( trans, email, user )
|
||||
if not message and username:
|
||||
message = validate_publicname( trans, username, user )
|
||||
if message:
|
||||
status = 'error'
|
||||
else:
|
||||
if ( user.email != email ):
|
||||
# The user's private role name must match the user's login ( email )
|
||||
private_role = trans.app.security_agent.get_private_user_role( user )
|
||||
private_role.name = email
|
||||
private_role.description = 'Private role for ' + email
|
||||
# Change the email itself
|
||||
user.email = email
|
||||
trans.sa_session.add_all( ( user, private_role ) )
|
||||
trans.sa_session.flush()
|
||||
if trans.webapp.name == 'galaxy' and trans.app.config.user_activation_on:
|
||||
user.active = False
|
||||
trans.sa_session.add( user )
|
||||
trans.sa_session.flush()
|
||||
is_activation_sent = self.send_verification_email( trans, user.email, user.username )
|
||||
if is_activation_sent:
|
||||
message = 'The login information has been updated with the changes.<br>Verification email has been sent to your new email address. Please verify it by clicking the activation link in the email.<br>Please check your spam/trash folder in case you cannot find the message.'
|
||||
else:
|
||||
message = 'Unable to send activation email, please contact your local Galaxy administrator.'
|
||||
if trans.app.config.error_email_to is not None:
|
||||
message += ' Contact: %s' % trans.app.config.error_email_to
|
||||
if ( user.username != username ):
|
||||
user.username = username
|
||||
trans.sa_session.add( user )
|
||||
trans.sa_session.flush()
|
||||
message = 'The login information has been updated with the changes.'
|
||||
elif user and params.get( 'edit_user_info_button', False ):
|
||||
# Edit user information - webapp MUST BE 'galaxy'
|
||||
user_type_fd_id = params.get( 'user_type_fd_id', 'none' )
|
||||
if user_type_fd_id not in [ 'none' ]:
|
||||
user_type_form_definition = trans.sa_session.query( trans.app.model.FormDefinition ).get( trans.security.decode_id( user_type_fd_id ) )
|
||||
elif user.values:
|
||||
user_type_form_definition = user.values.form_definition
|
||||
else:
|
||||
# User was created before any of the user_info forms were created
|
||||
user_type_form_definition = None
|
||||
if user_type_form_definition:
|
||||
values = self.get_form_values( trans, user, user_type_form_definition, **kwd )
|
||||
else:
|
||||
values = {}
|
||||
flush_needed = False
|
||||
if user.values:
|
||||
# Editing the user info of an existing user with existing user info
|
||||
user.values.content = values
|
||||
trans.sa_session.add( user.values )
|
||||
flush_needed = True
|
||||
elif values:
|
||||
form_values = trans.model.FormValues( user_type_form_definition, values )
|
||||
trans.sa_session.add( form_values )
|
||||
user.values = form_values
|
||||
flush_needed = True
|
||||
if flush_needed:
|
||||
trans.sa_session.add( user )
|
||||
trans.sa_session.flush()
|
||||
message = "The user information has been updated with the changes."
|
||||
if user and trans.webapp.name == 'galaxy' and is_admin:
|
||||
kwd[ 'user_id' ] = trans.security.encode_id( user.id )
|
||||
kwd[ 'id' ] = user_id
|
||||
if message:
|
||||
kwd[ 'message' ] = util.sanitize_text( message )
|
||||
if status:
|
||||
kwd[ 'status' ] = status
|
||||
return trans.response.send_redirect( web.url_for( controller='user',
|
||||
action='manage_user_info',
|
||||
cntrller=cntrller,
|
||||
**kwd ) )
|
||||
|
||||
@web.expose
|
||||
def change_password( self, trans, token=None, **kwd):
|
||||
"""
|
||||
Provides a form with which one can change their password. If token is
|
||||
provided, don't require current password.
|
||||
"""
|
||||
status = None
|
||||
message = kwd.get( 'message', '' )
|
||||
user = None
|
||||
if kwd.get( 'change_password_button', False ):
|
||||
password = kwd.get( 'password', '' )
|
||||
confirm = kwd.get( 'confirm', '' )
|
||||
current = kwd.get( 'current', '' )
|
||||
token_result = None
|
||||
if token:
|
||||
# If a token was supplied, validate and set user
|
||||
token_result = trans.sa_session.query( trans.app.model.PasswordResetToken ).get(token)
|
||||
if token_result and token_result.expiration_time > datetime.utcnow():
|
||||
user = token_result.user
|
||||
else:
|
||||
return trans.show_error_message("Invalid or expired password reset token, please request a new one.")
|
||||
else:
|
||||
# The user is changing their own password, validate their current password
|
||||
(ok, message) = trans.app.auth_manager.check_change_password(trans.user, current )
|
||||
if ok:
|
||||
user = trans.user
|
||||
else:
|
||||
status = 'error'
|
||||
if user:
|
||||
# Validate the new password
|
||||
message = validate_password( trans, password, confirm )
|
||||
if message:
|
||||
status = 'error'
|
||||
else:
|
||||
# Save new password
|
||||
user.set_password_cleartext( password )
|
||||
# if we used a token, invalidate it and log the user in.
|
||||
if token_result:
|
||||
trans.handle_user_login(token_result.user)
|
||||
token_result.expiration_time = datetime.utcnow()
|
||||
trans.sa_session.add(token_result)
|
||||
# Invalidate all other sessions
|
||||
for other_galaxy_session in trans.sa_session.query( trans.app.model.GalaxySession ) \
|
||||
.filter( and_( trans.app.model.GalaxySession.table.c.user_id == user.id,
|
||||
trans.app.model.GalaxySession.table.c.is_valid == true(),
|
||||
trans.app.model.GalaxySession.table.c.id != trans.galaxy_session.id ) ):
|
||||
other_galaxy_session.is_valid = False
|
||||
trans.sa_session.add( other_galaxy_session )
|
||||
trans.sa_session.add( user )
|
||||
trans.sa_session.flush()
|
||||
trans.log_event( "User change password" )
|
||||
if kwd.get('display_top', False) == 'True':
|
||||
return trans.response.send_redirect( url_for( '/', message='Password has been changed' ))
|
||||
else:
|
||||
return trans.show_ok_message('The password has been changed and any other existing Galaxy sessions have been logged out (but jobs in histories in those sessions will not be interrupted).')
|
||||
|
||||
return trans.fill_template( '/user/change_password.mako',
|
||||
token=token,
|
||||
status=status,
|
||||
message=message,
|
||||
display_top=kwd.get('redirect_home', False)
|
||||
)
|
||||
|
||||
@web.expose
|
||||
def change_communication( self, trans, cntrller, **kwd):
|
||||
"""
|
||||
Provides a form with which the user can activate/deactivate
|
||||
the commnication server.
|
||||
"""
|
||||
params = util.Params( kwd )
|
||||
is_admin = cntrller == 'admin' and trans.user_is_admin()
|
||||
message = util.restore_text( params.get( 'message', '' ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
user_id = params.get( 'user_id', None )
|
||||
activated = ''
|
||||
|
||||
if user_id and is_admin:
|
||||
user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( user_id ) )
|
||||
else:
|
||||
user = trans.user
|
||||
|
||||
if user and params.get( 'change_communication_button', False ):
|
||||
communication_enabled = kwd.get( 'enable_communication_server', False )
|
||||
if communication_enabled:
|
||||
activated = 'checked'
|
||||
user.preferences['communication_server'] = True
|
||||
message = 'Your communication settings has been updated and activated.'
|
||||
else:
|
||||
activated = ''
|
||||
user.preferences['communication_server'] = False
|
||||
message = 'Your communication settings has been updated and deactivated.'
|
||||
trans.sa_session.add( user )
|
||||
trans.sa_session.flush()
|
||||
else:
|
||||
if string_as_bool( user.preferences.get('communication_server', '0') ):
|
||||
activated = 'checked'
|
||||
|
||||
return trans.fill_template( '/user/communication_settings.mako',
|
||||
cntrller=cntrller,
|
||||
status=status,
|
||||
activated=activated,
|
||||
message=message )
|
||||
|
||||
@web.expose
|
||||
def reset_password( self, trans, email=None, **kwd ):
|
||||
"""Reset the user's password. Send an email with token that allows a password change."""
|
||||
@@ -1286,148 +924,8 @@ class User( BaseUIController, UsesFormDefinitionsMixin, CreatesUsersMixin, Creat
|
||||
message = "\n".join( [ validate_email( trans, email ),
|
||||
validate_password( trans, password, confirm ),
|
||||
validate_publicname( trans, username ) ] ).rstrip()
|
||||
if not message:
|
||||
if trans.webapp.name == 'galaxy':
|
||||
if self.get_all_forms( trans,
|
||||
filter=dict( deleted=False ),
|
||||
form_type=trans.app.model.FormDefinition.types.USER_INFO ):
|
||||
user_type_fd_id = params.get( 'user_type_fd_id', 'none' )
|
||||
if user_type_fd_id in [ 'none' ]:
|
||||
return "Select the user's type and information"
|
||||
return message
|
||||
|
||||
@web.expose
|
||||
def set_default_permissions( self, trans, cntrller, **kwd ):
|
||||
"""Set the user's default permissions for the new histories"""
|
||||
params = util.Params( kwd )
|
||||
message = util.restore_text( params.get( 'message', '' ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
if trans.user:
|
||||
if 'update_roles_button' in kwd:
|
||||
p = util.Params( kwd )
|
||||
permissions = {}
|
||||
for k, v in trans.app.model.Dataset.permitted_actions.items():
|
||||
in_roles = p.get( k + '_in', [] )
|
||||
if not isinstance( in_roles, list ):
|
||||
in_roles = [ in_roles ]
|
||||
in_roles = [ trans.sa_session.query( trans.app.model.Role ).get( x ) for x in in_roles ]
|
||||
action = trans.app.security_agent.get_action( v.action ).action
|
||||
permissions[ action ] = in_roles
|
||||
trans.app.security_agent.user_set_default_permissions( trans.user, permissions )
|
||||
message = 'Default new history permissions have been changed.'
|
||||
return trans.fill_template( 'user/permissions.mako',
|
||||
cntrller=cntrller,
|
||||
message=message,
|
||||
status=status )
|
||||
else:
|
||||
# User not logged in, history group must be only public
|
||||
return trans.show_error_message( "You must be logged in to change your default permitted actions." )
|
||||
|
||||
@web.expose
|
||||
@web.require_login()
|
||||
def toolbox_filters( self, trans, cntrller, **kwd ):
|
||||
"""
|
||||
Sets the user's default filters for the toolbox.
|
||||
Toolbox filters are specified in galaxy.ini.
|
||||
The user can activate them and the choice is stored in user_preferences.
|
||||
"""
|
||||
|
||||
def get_filter_mapping( db_filters, config_filters, factory ):
|
||||
"""
|
||||
Compare the allowed filters from the galaxy.ini config file with the previously saved or default filters from the database.
|
||||
We need that to toogle the checkboxes for the formular in the right way.
|
||||
Furthermore we extract all information associated to a filter to display them in the formular.
|
||||
"""
|
||||
filters = list()
|
||||
for filter_name in config_filters:
|
||||
function = factory._build_filter_function(filter_name)
|
||||
doc_string = docstring_trim( function.__doc__ )
|
||||
split = doc_string.split('\n\n')
|
||||
if split:
|
||||
sdesc = split[0]
|
||||
else:
|
||||
log.error( 'No description specified in the __doc__ string for %s.' % filter_name )
|
||||
if len(split) > 1:
|
||||
description = split[1]
|
||||
else:
|
||||
description = ''
|
||||
|
||||
if filter_name in db_filters:
|
||||
filters.append( dict( filterpath=filter_name, short_desc=sdesc, desc=description, checked=True ) )
|
||||
else:
|
||||
filters.append( dict( filterpath=filter_name, short_desc=sdesc, desc=description, checked=False ) )
|
||||
return filters
|
||||
|
||||
params = util.Params( kwd )
|
||||
message = util.restore_text( params.get( 'message', '' ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
|
||||
user_id = params.get( 'user_id', False )
|
||||
if user_id:
|
||||
user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( user_id ) )
|
||||
else:
|
||||
user = trans.user
|
||||
|
||||
if user:
|
||||
saved_user_tool_filters = list()
|
||||
saved_user_section_filters = list()
|
||||
saved_user_label_filters = list()
|
||||
|
||||
for name, value in user.preferences.items():
|
||||
if name == 'toolbox_tool_filters':
|
||||
saved_user_tool_filters = listify( value, do_strip=True )
|
||||
elif name == 'toolbox_section_filters':
|
||||
saved_user_section_filters = listify( value, do_strip=True )
|
||||
elif name == 'toolbox_label_filters':
|
||||
saved_user_label_filters = listify( value, do_strip=True )
|
||||
|
||||
ff = FilterFactory(trans.app.toolbox)
|
||||
tool_filters = get_filter_mapping( saved_user_tool_filters, trans.app.config.user_tool_filters, ff )
|
||||
section_filters = get_filter_mapping( saved_user_section_filters, trans.app.config.user_section_filters, ff )
|
||||
label_filters = get_filter_mapping( saved_user_label_filters, trans.app.config.user_label_filters, ff )
|
||||
|
||||
return trans.fill_template( 'user/toolbox_filters.mako',
|
||||
cntrller=cntrller,
|
||||
message=message,
|
||||
tool_filters=tool_filters,
|
||||
section_filters=section_filters,
|
||||
label_filters=label_filters,
|
||||
user=user,
|
||||
status=status )
|
||||
else:
|
||||
# User not logged in, history group must be only public
|
||||
return trans.show_error_message( "You must be logged in to change private toolbox filters." )
|
||||
|
||||
@web.expose
|
||||
@web.require_login( "to change the private toolbox filters" )
|
||||
def edit_toolbox_filters( self, trans, cntrller, **kwd ):
|
||||
params = util.Params( kwd )
|
||||
message = util.restore_text( params.get( 'message', '' ) )
|
||||
|
||||
if params.get( 'edit_toolbox_filter_button', False ):
|
||||
tool_filters = list()
|
||||
section_filters = list()
|
||||
label_filters = list()
|
||||
for name, state in params.flatten():
|
||||
if state == 'on':
|
||||
if name.startswith('t_'):
|
||||
tool_filters.append( name[2:] )
|
||||
elif name.startswith('l_'):
|
||||
label_filters.append( name[2:] )
|
||||
elif name.startswith('s_'):
|
||||
section_filters.append( name[2:] )
|
||||
trans.user.preferences['toolbox_tool_filters'] = ','.join( tool_filters )
|
||||
trans.user.preferences['toolbox_section_filters'] = ','.join( section_filters )
|
||||
trans.user.preferences['toolbox_label_filters'] = ','.join( label_filters )
|
||||
|
||||
trans.sa_session.add( trans.user )
|
||||
trans.sa_session.flush()
|
||||
message = 'ToolBox filters has been updated.'
|
||||
kwd = dict( message=message, status='done' )
|
||||
|
||||
# Display the ToolBox filters form with the current values filled in
|
||||
return self.toolbox_filters( trans, cntrller, **kwd )
|
||||
|
||||
@web.expose
|
||||
@web.require_login( "to get most recently used tool" )
|
||||
@web.json_pretty
|
||||
@@ -1450,237 +948,6 @@ class User( BaseUIController, UsesFormDefinitionsMixin, CreatesUsersMixin, Creat
|
||||
"description": tool.description}
|
||||
return tool_info
|
||||
|
||||
@web.expose
|
||||
def manage_addresses(self, trans, **kwd):
|
||||
if trans.user:
|
||||
params = util.Params( kwd )
|
||||
message = util.restore_text( params.get( 'message', '' ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
show_filter = util.restore_text( params.get( 'show_filter', 'Active' ) )
|
||||
if show_filter == 'All':
|
||||
addresses = [address for address in trans.user.addresses]
|
||||
elif show_filter == 'Deleted':
|
||||
addresses = [address for address in trans.user.addresses if address.deleted]
|
||||
else:
|
||||
addresses = [address for address in trans.user.addresses if not address.deleted]
|
||||
return trans.fill_template( 'user/address.mako',
|
||||
addresses=addresses,
|
||||
show_filter=show_filter,
|
||||
message=message,
|
||||
status=status)
|
||||
else:
|
||||
# User not logged in, history group must be only public
|
||||
return trans.show_error_message( "You must be logged in to change your default permitted actions." )
|
||||
|
||||
@web.require_login( "to add addresses" )
|
||||
@web.expose
|
||||
def new_address( self, trans, cntrller, **kwd ):
|
||||
params = util.Params( kwd )
|
||||
message = util.restore_text( params.get( 'message', '' ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
is_admin = cntrller == 'admin' and trans.user_is_admin()
|
||||
user_id = params.get( 'id', False )
|
||||
if is_admin:
|
||||
if not user_id:
|
||||
return trans.show_error_message( "You must specify a user to add a new address to." )
|
||||
user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( user_id ) )
|
||||
else:
|
||||
user = trans.user
|
||||
short_desc = util.restore_text( params.get( 'short_desc', '' ) )
|
||||
name = util.restore_text( params.get( 'name', '' ) )
|
||||
institution = util.restore_text( params.get( 'institution', '' ) )
|
||||
address = util.restore_text( params.get( 'address', '' ) )
|
||||
city = util.restore_text( params.get( 'city', '' ) )
|
||||
state = util.restore_text( params.get( 'state', '' ) )
|
||||
postal_code = util.restore_text( params.get( 'postal_code', '' ) )
|
||||
country = util.restore_text( params.get( 'country', '' ) )
|
||||
phone = util.restore_text( params.get( 'phone', '' ) )
|
||||
ok = True
|
||||
if not trans.app.config.allow_user_creation and not is_admin:
|
||||
return trans.show_error_message( 'User registration is disabled. Please contact your local Galaxy administrator for an account.' )
|
||||
if params.get( 'new_address_button', False ):
|
||||
if not short_desc:
|
||||
ok = False
|
||||
message = 'Enter a short description for this address'
|
||||
elif not name:
|
||||
ok = False
|
||||
message = 'Enter the name'
|
||||
elif not institution:
|
||||
ok = False
|
||||
message = 'Enter the institution associated with the user'
|
||||
elif not address:
|
||||
ok = False
|
||||
message = 'Enter the address'
|
||||
elif not city:
|
||||
ok = False
|
||||
message = 'Enter the city'
|
||||
elif not state:
|
||||
ok = False
|
||||
message = 'Enter the state/province/region'
|
||||
elif not postal_code:
|
||||
ok = False
|
||||
message = 'Enter the postal code'
|
||||
elif not country:
|
||||
ok = False
|
||||
message = 'Enter the country'
|
||||
if ok:
|
||||
user_address = trans.model.UserAddress( user=user,
|
||||
desc=short_desc,
|
||||
name=name,
|
||||
institution=institution,
|
||||
address=address,
|
||||
city=city,
|
||||
state=state,
|
||||
postal_code=postal_code,
|
||||
country=country,
|
||||
phone=phone )
|
||||
trans.sa_session.add( user_address )
|
||||
trans.sa_session.flush()
|
||||
message = 'Address (%s) has been added' % escape( user_address.desc )
|
||||
new_kwd = dict( message=message, status=status )
|
||||
if is_admin:
|
||||
new_kwd[ 'id' ] = trans.security.encode_id( user.id )
|
||||
return trans.response.send_redirect( web.url_for( controller='user',
|
||||
action='manage_user_info',
|
||||
cntrller=cntrller,
|
||||
**new_kwd ) )
|
||||
# Display the address form with the current values filled in
|
||||
return trans.fill_template( 'user/new_address.mako',
|
||||
cntrller=cntrller,
|
||||
user=user,
|
||||
short_desc=short_desc,
|
||||
name=name,
|
||||
institution=institution,
|
||||
address=address,
|
||||
city=city,
|
||||
state=state,
|
||||
postal_code=postal_code,
|
||||
country=country,
|
||||
phone=phone,
|
||||
message=escape(message),
|
||||
status=status )
|
||||
|
||||
@web.require_login( "to edit addresses" )
|
||||
@web.expose
|
||||
def edit_address( self, trans, cntrller, **kwd ):
|
||||
params = util.Params( kwd )
|
||||
message = util.restore_text( params.get( 'message', '' ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
is_admin = cntrller == 'admin' and trans.user_is_admin()
|
||||
user_id = params.get( 'id', False )
|
||||
if is_admin:
|
||||
if not user_id:
|
||||
return trans.show_error_message( "You must specify a user to add a new address to." )
|
||||
user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( user_id ) )
|
||||
else:
|
||||
user = trans.user
|
||||
address_id = params.get( 'address_id', None )
|
||||
if not address_id:
|
||||
return trans.show_error_message( "Invalid address id." )
|
||||
address_obj = trans.sa_session.query( trans.app.model.UserAddress ).get( trans.security.decode_id( address_id ) )
|
||||
if address_obj.user_id != user.id:
|
||||
return trans.show_error_message( "Invalid address id." )
|
||||
if params.get( 'edit_address_button', False ):
|
||||
short_desc = util.restore_text( params.get( 'short_desc', '' ) )
|
||||
name = util.restore_text( params.get( 'name', '' ) )
|
||||
institution = util.restore_text( params.get( 'institution', '' ) )
|
||||
address = util.restore_text( params.get( 'address', '' ) )
|
||||
city = util.restore_text( params.get( 'city', '' ) )
|
||||
state = util.restore_text( params.get( 'state', '' ) )
|
||||
postal_code = util.restore_text( params.get( 'postal_code', '' ) )
|
||||
country = util.restore_text( params.get( 'country', '' ) )
|
||||
phone = util.restore_text( params.get( 'phone', '' ) )
|
||||
ok = True
|
||||
if not short_desc:
|
||||
ok = False
|
||||
message = 'Enter a short description for this address'
|
||||
elif not name:
|
||||
ok = False
|
||||
message = 'Enter the name'
|
||||
elif not institution:
|
||||
ok = False
|
||||
message = 'Enter the institution associated with the user'
|
||||
elif not address:
|
||||
ok = False
|
||||
message = 'Enter the address'
|
||||
elif not city:
|
||||
ok = False
|
||||
message = 'Enter the city'
|
||||
elif not state:
|
||||
ok = False
|
||||
message = 'Enter the state/province/region'
|
||||
elif not postal_code:
|
||||
ok = False
|
||||
message = 'Enter the postal code'
|
||||
elif not country:
|
||||
ok = False
|
||||
message = 'Enter the country'
|
||||
if ok:
|
||||
address_obj.desc = short_desc
|
||||
address_obj.name = name
|
||||
address_obj.institution = institution
|
||||
address_obj.address = address
|
||||
address_obj.city = city
|
||||
address_obj.state = state
|
||||
address_obj.postal_code = postal_code
|
||||
address_obj.country = country
|
||||
address_obj.phone = phone
|
||||
trans.sa_session.add( address_obj )
|
||||
trans.sa_session.flush()
|
||||
message = 'Address (%s) has been updated.' % escape( address_obj.desc )
|
||||
new_kwd = dict( message=message, status=status )
|
||||
if is_admin:
|
||||
new_kwd[ 'id' ] = trans.security.encode_id( user.id )
|
||||
return trans.response.send_redirect( web.url_for( controller='user',
|
||||
action='manage_user_info',
|
||||
cntrller=cntrller,
|
||||
**new_kwd ) )
|
||||
# Display the address form with the current values filled in
|
||||
return trans.fill_template( 'user/edit_address.mako',
|
||||
cntrller=cntrller,
|
||||
user=user,
|
||||
address_obj=address_obj,
|
||||
message=escape( message ),
|
||||
status=status )
|
||||
|
||||
@web.require_login( "to delete addresses" )
|
||||
@web.expose
|
||||
def delete_address( self, trans, cntrller, address_id=None, **kwd ):
|
||||
return self.__delete_undelete_address( trans, cntrller, 'delete', address_id=address_id, **kwd )
|
||||
|
||||
@web.require_login( "to undelete addresses" )
|
||||
@web.expose
|
||||
def undelete_address( self, trans, cntrller, address_id=None, **kwd ):
|
||||
return self.__delete_undelete_address( trans, cntrller, 'undelete', address_id=address_id, **kwd )
|
||||
|
||||
def __delete_undelete_address( self, trans, cntrller, op, address_id=None, **kwd ):
|
||||
is_admin = cntrller == 'admin' and trans.user_is_admin()
|
||||
user_id = kwd.get( 'id', False )
|
||||
if is_admin:
|
||||
if not user_id:
|
||||
return trans.show_error_message( "You must specify a user to %s an address from." % op )
|
||||
user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( user_id ) )
|
||||
else:
|
||||
user = trans.user
|
||||
try:
|
||||
user_address = trans.sa_session.query( trans.app.model.UserAddress ).get( trans.security.decode_id( address_id ) )
|
||||
except:
|
||||
return trans.show_error_message( "Invalid address id." )
|
||||
if user_address:
|
||||
if user_address.user_id != user.id:
|
||||
return trans.show_error_message( "Invalid address id." )
|
||||
user_address.deleted = True if op == 'delete' else False
|
||||
trans.sa_session.add( user_address )
|
||||
trans.sa_session.flush()
|
||||
message = 'Address (%s) %sd' % ( escape( user_address.desc ), op )
|
||||
status = 'done'
|
||||
return trans.response.send_redirect( web.url_for( controller='user',
|
||||
action='manage_user_info',
|
||||
cntrller=cntrller,
|
||||
id=trans.security.encode_id( user.id ),
|
||||
message=message,
|
||||
status=status ) )
|
||||
|
||||
@web.expose
|
||||
def set_user_pref_async( self, trans, pref_name, pref_value ):
|
||||
""" Set a user preference asynchronously. If user is not logged in, do nothing. """
|
||||
@@ -1837,22 +1104,6 @@ class User( BaseUIController, UsesFormDefinitionsMixin, CreatesUsersMixin, Creat
|
||||
fasta_hdas=fasta_hdas,
|
||||
use_panels=kwds.get( 'use_panels', False ) )
|
||||
|
||||
@web.expose
|
||||
@web.require_login()
|
||||
def api_keys( self, trans, cntrller, **kwd ):
|
||||
params = util.Params( kwd )
|
||||
message = escape( util.restore_text( params.get( 'message', '' ) ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
if params.get( 'new_api_key_button', False ):
|
||||
self.create_api_key( trans, trans.user )
|
||||
message = "Generated a new web API key"
|
||||
status = "done"
|
||||
return trans.fill_template( 'webapps/galaxy/user/api_keys.mako',
|
||||
cntrller=cntrller,
|
||||
user=trans.user,
|
||||
message=message,
|
||||
status=status )
|
||||
|
||||
def __get_redirect_url( self, redirect ):
|
||||
root_url = url_for( '/', qualified=True )
|
||||
# compare urls, to prevent a redirect from pointing (directly) outside of galaxy
|
||||
@@ -1863,17 +1114,3 @@ class User( BaseUIController, UsesFormDefinitionsMixin, CreatesUsersMixin, Creat
|
||||
elif util.compare_urls( url_for( controller='user', action='logout', qualified=True ), redirect ):
|
||||
redirect = root_url
|
||||
return redirect
|
||||
|
||||
# ===== Methods for building SelectFields ================================
|
||||
def __build_user_type_fd_id_select_field( self, trans, selected_value ):
|
||||
# Get all the user information forms
|
||||
user_info_forms = self.get_all_forms( trans,
|
||||
filter=dict( deleted=False ),
|
||||
form_type=trans.model.FormDefinition.types.USER_INFO )
|
||||
return build_select_field( trans,
|
||||
objs=user_info_forms,
|
||||
label_attr='name',
|
||||
select_field_name='user_type_fd_id',
|
||||
initial_value='none',
|
||||
selected_value=selected_value,
|
||||
refresh_on_change=True )
|
||||
|
||||
@@ -1,3 +1,250 @@
|
||||
from galaxy.webapps.galaxy.controllers.user import User
|
||||
from datetime import datetime
|
||||
|
||||
__all__ = ('User', )
|
||||
from markupsafe import escape
|
||||
|
||||
from sqlalchemy import and_
|
||||
from sqlalchemy import true
|
||||
|
||||
from galaxy import util
|
||||
from galaxy import web
|
||||
|
||||
from galaxy.security.validate_user_input import validate_email, validate_password, validate_publicname
|
||||
from galaxy.web import url_for
|
||||
from galaxy.webapps.galaxy.controllers.user import User as BaseUser
|
||||
|
||||
|
||||
class User( BaseUser ):
|
||||
|
||||
@web.expose
|
||||
def index( self, trans, cntrller='user', **kwd ):
|
||||
return trans.fill_template( '/webapps/tool_shed/user/index.mako', cntrller=cntrller )
|
||||
|
||||
@web.expose
|
||||
def manage_user_info( self, trans, cntrller, **kwd ):
|
||||
'''Manage a user's login, password, public username, type, addresses, etc.'''
|
||||
params = util.Params( kwd )
|
||||
user_id = params.get( 'id', None )
|
||||
if user_id:
|
||||
user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( user_id ) )
|
||||
else:
|
||||
user = trans.user
|
||||
if not user:
|
||||
raise AssertionError("The user id (%s) is not valid" % str( user_id ))
|
||||
email = util.restore_text( params.get( 'email', user.email ) )
|
||||
username = util.restore_text( params.get( 'username', '' ) )
|
||||
if not username:
|
||||
username = user.username
|
||||
message = escape( util.restore_text( params.get( 'message', '' ) ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
return trans.fill_template( '/webapps/tool_shed/user/manage_info.mako',
|
||||
cntrller=cntrller,
|
||||
user=user,
|
||||
email=email,
|
||||
username=username,
|
||||
message=message,
|
||||
status=status )
|
||||
|
||||
@web.expose
|
||||
@web.require_login()
|
||||
def api_keys( self, trans, cntrller, **kwd ):
|
||||
params = util.Params( kwd )
|
||||
message = escape( util.restore_text( params.get( 'message', '' ) ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
if params.get( 'new_api_key_button', False ):
|
||||
self.create_api_key( trans, trans.user )
|
||||
message = "Generated a new web API key"
|
||||
status = "done"
|
||||
return trans.fill_template( '/webapps/tool_shed/user/api_keys.mako',
|
||||
cntrller=cntrller,
|
||||
user=trans.user,
|
||||
message=message,
|
||||
status=status )
|
||||
|
||||
# For REMOTE_USER, we need the ability to just edit the username
|
||||
@web.expose
|
||||
@web.require_login( "to manage the public name" )
|
||||
def edit_username( self, trans, cntrller, **kwd ):
|
||||
params = util.Params( kwd )
|
||||
is_admin = cntrller == 'admin' and trans.user_is_admin()
|
||||
message = util.restore_text( params.get( 'message', '' ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
user_id = params.get( 'user_id', None )
|
||||
if user_id and is_admin:
|
||||
user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( user_id ) )
|
||||
else:
|
||||
user = trans.user
|
||||
if user and params.get( 'change_username_button', False ):
|
||||
username = kwd.get( 'username', '' )
|
||||
if username:
|
||||
message = validate_publicname( trans, username, user )
|
||||
if message:
|
||||
status = 'error'
|
||||
else:
|
||||
user.username = username
|
||||
trans.sa_session.add( user )
|
||||
trans.sa_session.flush()
|
||||
message = 'The username has been updated with the changes.'
|
||||
return trans.fill_template( '/webapps/tool_shed/user/username.mako',
|
||||
cntrller=cntrller,
|
||||
user=user,
|
||||
username=user.username,
|
||||
message=message,
|
||||
status=status )
|
||||
|
||||
@web.expose
|
||||
def edit_info( self, trans, cntrller, **kwd ):
|
||||
"""
|
||||
Edit user information = username, email or password.
|
||||
"""
|
||||
params = util.Params( kwd )
|
||||
is_admin = cntrller == 'admin' and trans.user_is_admin()
|
||||
message = util.restore_text( params.get( 'message', '' ) )
|
||||
status = params.get( 'status', 'done' )
|
||||
user_id = params.get( 'user_id', None )
|
||||
if user_id and is_admin:
|
||||
user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( user_id ) )
|
||||
elif user_id and ( not trans.user or trans.user.id != trans.security.decode_id( user_id ) ):
|
||||
message = 'Invalid user id'
|
||||
status = 'error'
|
||||
user = None
|
||||
else:
|
||||
user = trans.user
|
||||
if user and params.get( 'login_info_button', False ):
|
||||
# Editing email and username
|
||||
email = util.restore_text( params.get( 'email', '' ) )
|
||||
username = util.restore_text( params.get( 'username', '' ) ).lower()
|
||||
|
||||
# Validate the new values for email and username
|
||||
message = validate_email( trans, email, user )
|
||||
if not message and username:
|
||||
message = validate_publicname( trans, username, user )
|
||||
if message:
|
||||
status = 'error'
|
||||
else:
|
||||
if ( user.email != email ):
|
||||
# The user's private role name must match the user's login ( email )
|
||||
private_role = trans.app.security_agent.get_private_user_role( user )
|
||||
private_role.name = email
|
||||
private_role.description = 'Private role for ' + email
|
||||
# Change the email itself
|
||||
user.email = email
|
||||
trans.sa_session.add_all( ( user, private_role ) )
|
||||
trans.sa_session.flush()
|
||||
if trans.webapp.name == 'galaxy' and trans.app.config.user_activation_on:
|
||||
user.active = False
|
||||
trans.sa_session.add( user )
|
||||
trans.sa_session.flush()
|
||||
is_activation_sent = self.send_verification_email( trans, user.email, user.username )
|
||||
if is_activation_sent:
|
||||
message = 'The login information has been updated with the changes.<br>Verification email has been sent to your new email address. Please verify it by clicking the activation link in the email.<br>Please check your spam/trash folder in case you cannot find the message.'
|
||||
else:
|
||||
message = 'Unable to send activation email, please contact your local Galaxy administrator.'
|
||||
if trans.app.config.error_email_to is not None:
|
||||
message += ' Contact: %s' % trans.app.config.error_email_to
|
||||
if ( user.username != username ):
|
||||
user.username = username
|
||||
trans.sa_session.add( user )
|
||||
trans.sa_session.flush()
|
||||
message = 'The login information has been updated with the changes.'
|
||||
elif user and params.get( 'edit_user_info_button', False ):
|
||||
# Edit user information - webapp MUST BE 'galaxy'
|
||||
user_type_fd_id = params.get( 'user_type_fd_id', 'none' )
|
||||
if user_type_fd_id not in [ 'none' ]:
|
||||
user_type_form_definition = trans.sa_session.query( trans.app.model.FormDefinition ).get( trans.security.decode_id( user_type_fd_id ) )
|
||||
elif user.values:
|
||||
user_type_form_definition = user.values.form_definition
|
||||
else:
|
||||
# User was created before any of the user_info forms were created
|
||||
user_type_form_definition = None
|
||||
if user_type_form_definition:
|
||||
values = self.get_form_values( trans, user, user_type_form_definition, **kwd )
|
||||
else:
|
||||
values = {}
|
||||
flush_needed = False
|
||||
if user.values:
|
||||
# Editing the user info of an existing user with existing user info
|
||||
user.values.content = values
|
||||
trans.sa_session.add( user.values )
|
||||
flush_needed = True
|
||||
elif values:
|
||||
form_values = trans.model.FormValues( user_type_form_definition, values )
|
||||
trans.sa_session.add( form_values )
|
||||
user.values = form_values
|
||||
flush_needed = True
|
||||
if flush_needed:
|
||||
trans.sa_session.add( user )
|
||||
trans.sa_session.flush()
|
||||
message = "The user information has been updated with the changes."
|
||||
if user and trans.webapp.name == 'galaxy' and is_admin:
|
||||
kwd[ 'user_id' ] = trans.security.encode_id( user.id )
|
||||
kwd[ 'id' ] = user_id
|
||||
if message:
|
||||
kwd[ 'message' ] = util.sanitize_text( message )
|
||||
if status:
|
||||
kwd[ 'status' ] = status
|
||||
return trans.response.send_redirect( web.url_for( controller='user',
|
||||
action='manage_user_info',
|
||||
cntrller=cntrller,
|
||||
**kwd ) )
|
||||
|
||||
@web.expose
|
||||
def change_password( self, trans, token=None, **kwd):
|
||||
"""
|
||||
Provides a form with which one can change their password. If token is
|
||||
provided, don't require current password.
|
||||
"""
|
||||
status = None
|
||||
message = kwd.get( 'message', '' )
|
||||
user = None
|
||||
if kwd.get( 'change_password_button', False ):
|
||||
password = kwd.get( 'password', '' )
|
||||
confirm = kwd.get( 'confirm', '' )
|
||||
current = kwd.get( 'current', '' )
|
||||
token_result = None
|
||||
if token:
|
||||
# If a token was supplied, validate and set user
|
||||
token_result = trans.sa_session.query( trans.app.model.PasswordResetToken ).get(token)
|
||||
if token_result and token_result.expiration_time > datetime.utcnow():
|
||||
user = token_result.user
|
||||
else:
|
||||
return trans.show_error_message("Invalid or expired password reset token, please request a new one.")
|
||||
else:
|
||||
# The user is changing their own password, validate their current password
|
||||
(ok, message) = trans.app.auth_manager.check_change_password(trans.user, current )
|
||||
if ok:
|
||||
user = trans.user
|
||||
else:
|
||||
status = 'error'
|
||||
if user:
|
||||
# Validate the new password
|
||||
message = validate_password( trans, password, confirm )
|
||||
if message:
|
||||
status = 'error'
|
||||
else:
|
||||
# Save new password
|
||||
user.set_password_cleartext( password )
|
||||
# if we used a token, invalidate it and log the user in.
|
||||
if token_result:
|
||||
trans.handle_user_login(token_result.user)
|
||||
token_result.expiration_time = datetime.utcnow()
|
||||
trans.sa_session.add(token_result)
|
||||
# Invalidate all other sessions
|
||||
for other_galaxy_session in trans.sa_session.query( trans.app.model.GalaxySession ) \
|
||||
.filter( and_( trans.app.model.GalaxySession.table.c.user_id == user.id,
|
||||
trans.app.model.GalaxySession.table.c.is_valid == true(),
|
||||
trans.app.model.GalaxySession.table.c.id != trans.galaxy_session.id ) ):
|
||||
other_galaxy_session.is_valid = False
|
||||
trans.sa_session.add( other_galaxy_session )
|
||||
trans.sa_session.add( user )
|
||||
trans.sa_session.flush()
|
||||
trans.log_event( "User change password" )
|
||||
if kwd.get('display_top', False) == 'True':
|
||||
return trans.response.send_redirect( url_for( '/', message='Password has been changed' ))
|
||||
else:
|
||||
return trans.show_ok_message('The password has been changed and any other existing Galaxy sessions have been logged out (but jobs in histories in those sessions will not be interrupted).')
|
||||
return trans.fill_template( '/webapps/tool_shed/user/change_password.mako',
|
||||
token=token,
|
||||
status=status,
|
||||
message=message,
|
||||
display_top=kwd.get('redirect_home', False)
|
||||
)
|
||||
|
||||
File diff suppressed because one or more lines are too long
@@ -1 +1 @@
|
||||
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@@ -1 +1 @@
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|
||||
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@@ -1,2 +1,2 @@
|
||||
define(["layout/masthead","layout/panel","mvc/ui/ui-modal","mvc/base-mvc"],function(a,b,c,d){var e=Backbone.View.extend(d.LoggableMixin).extend({_logNamespace:"layout",el:"body",className:"full-content",_panelIds:["left","center","right"],defaultOptions:{message_box_visible:!1,message_box_content:"",message_box_class:"info",show_inactivity_warning:!1,inactivity_box_content:""},initialize:function(b){this.log(this+".initialize:",b),_.extend(this,_.pick(b,this._panelIds)),this.options=_.defaults(_.omit(b.config,this._panelIds),this.defaultOptions),Galaxy.modal=this.modal=new c.View,this.masthead=new a.View(this.options),this.$el.attr("scroll","no"),this.$el.html(this._template()),this.$el.append(this.masthead.frame.$el),this.$("#masthead").replaceWith(this.masthead.$el),this.$el.append(this.modal.$el),this.$messagebox=this.$("#messagebox"),this.$inactivebox=this.$("#inactivebox")},render:function(){return $(".select2-hidden-accessible").remove(),this.log(this+".render:"),this.masthead.render(),this.renderMessageBox(),this.renderInactivityBox(),this.renderPanels(),this._checkCommunicationServerOnline(),this},renderMessageBox:function(){if(this.options.message_box_visible){var a=this.options.message_box_content||"",b=this.options.message_box_class||"info";this.$el.addClass("has-message-box"),this.$messagebox.attr("class","panel-"+b+"-message").html(a).toggle(!!a).show()}else this.$el.removeClass("has-message-box"),this.$messagebox.hide();return this},renderInactivityBox:function(){if(this.options.show_inactivity_warning){var a=this.options.inactivity_box_content||"",b=$("<a/>").attr("href",Galaxy.root+"user/resend_verification").text("Resend verification");this.$el.addClass("has-inactivity-box"),this.$inactivebox.html(a+" ").append(b).toggle(!!a).show()}else this.$el.removeClass("has-inactivity-box"),this.$inactivebox.hide();return this},renderPanels:function(){var a=this;return this._panelIds.forEach(function(b){_.has(a,b)&&(a[b].setElement("#"+b),a[b].render())}),this.left||this.center.$el.css("left",0),this.right||this.center.$el.css("right",0),this},_template:function(){return['<div id="everything">','<div id="background"/>','<div id="masthead"/>','<div id="messagebox"/>','<div id="inactivebox" class="panel-warning-message" />',this.left?'<div id="left" />':"",this.center?'<div id="center" class="inbound" />':"",this.right?'<div id="right" />':"","</div>",'<div id="dd-helper" />'].join("")},hideSidePanels:function(){this.left&&this.left.hide(),this.right&&this.right.hide()},toString:function(){return"PageLayoutView"},_checkCommunicationServerOnline:function(){var a=window.Galaxy.config.communication_server_host,b=window.Galaxy.config.communication_server_port,c=$("#show-chat-online");void 0!==window.Galaxy.user.attributes.preferences&&"1"===window.Galaxy.user.attributes.preferences.communication_server?$.ajax({url:a+":"+b}).success(function(){null!==window.Galaxy.user.id&&"hidden"===c.css("visibility")&&c.css("visibility","visible")}).error(function(){c.css("visibility","hidden")}):c.css("visibility","hidden")}});return{PageLayoutView:e}});
|
||||
define(["layout/masthead","layout/panel","mvc/ui/ui-modal","mvc/base-mvc"],function(a,b,c,d){var e=Backbone.View.extend(d.LoggableMixin).extend({_logNamespace:"layout",el:"body",className:"full-content",_panelIds:["left","center","right"],defaultOptions:{message_box_visible:!1,message_box_content:"",message_box_class:"info",show_inactivity_warning:!1,inactivity_box_content:""},initialize:function(b){this.log(this+".initialize:",b),_.extend(this,_.pick(b,this._panelIds)),this.options=_.defaults(_.omit(b.config,this._panelIds),this.defaultOptions),Galaxy.modal=this.modal=new c.View,this.masthead=new a.View(this.options),this.$el.attr("scroll","no"),this.$el.html(this._template()),this.$el.append(this.masthead.frame.$el),this.$("#masthead").replaceWith(this.masthead.$el),this.$el.append(this.modal.$el),this.$messagebox=this.$("#messagebox"),this.$inactivebox=this.$("#inactivebox")},render:function(){return $(".select2-hidden-accessible").remove(),this.log(this+".render:"),this.masthead.render(),this.renderMessageBox(),this.renderInactivityBox(),this.renderPanels(),this._checkCommunicationServerOnline(),this},renderMessageBox:function(){if(this.options.message_box_visible){var a=this.options.message_box_content||"",b=this.options.message_box_class||"info";this.$el.addClass("has-message-box"),this.$messagebox.attr("class","panel-"+b+"-message").html(a).toggle(!!a).show()}else this.$el.removeClass("has-message-box"),this.$messagebox.hide();return this},renderInactivityBox:function(){if(this.options.show_inactivity_warning){var a=this.options.inactivity_box_content||"",b=$("<a/>").attr("href",Galaxy.root+"user/resend_verification").text("Resend verification");this.$el.addClass("has-inactivity-box"),this.$inactivebox.html(a+" ").append(b).toggle(!!a).show()}else this.$el.removeClass("has-inactivity-box"),this.$inactivebox.hide();return this},renderPanels:function(){var a=this;return this._panelIds.forEach(function(b){_.has(a,b)&&(a[b].setElement("#"+b),a[b].render())}),this.left||this.center.$el.css("left",0),this.right||this.center.$el.css("right",0),this},_template:function(){return['<div id="everything">','<div id="background"/>','<div id="masthead"/>','<div id="messagebox"/>','<div id="inactivebox" class="panel-warning-message" />',this.left?'<div id="left" />':"",this.center?'<div id="center" class="inbound" />':"",this.right?'<div id="right" />':"","</div>",'<div id="dd-helper" />'].join("")},hideSidePanels:function(){this.left&&this.left.hide(),this.right&&this.right.hide()},toString:function(){return"PageLayoutView"},_checkCommunicationServerOnline:function(){var a=window.Galaxy.config.communication_server_host,b=window.Galaxy.config.communication_server_port,c=window.Galaxy.user.attributes.preferences,d=$("#show-chat-online");c&&-1!=["1","true"].indexOf(c.communication_server)?$.ajax({url:a+":"+b}).success(function(){null!==window.Galaxy.user.id&&"hidden"===d.css("visibility")&&d.css("visibility","visible")}).error(function(){d.css("visibility","hidden")}):d.css("visibility","hidden")}});return{PageLayoutView:e}});
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//# sourceMappingURL=../../maps/layout/page.js.map
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@@ -1,2 +1,2 @@
|
||||
define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-select-content","mvc/ui/ui-select-library","mvc/ui/ui-select-ftp","mvc/ui/ui-color-picker"],function(a,b,c,d,e,f){return Backbone.Model.extend({types:{text:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider","float":"_fieldSlider","boolean":"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp"},create:function(a){var b=this.types[a.type],c="function"==typeof this[b]?this[b].call(this,a):null;return c||(c=a.options?this._fieldSelect(a):this._fieldText(a),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+a.type+").")),void 0===a.value&&(a.value=null),c.value(a.value),c},_fieldData:function(a){return new c.View({id:"field-"+a.id,extensions:a.extensions,optional:a.optional,multiple:a.multiple,type:a.type,flavor:a.flavor,data:a.options,onchange:a.onchange})},_fieldSelect:function(a){if(a.is_workflow)return this._fieldText(a);"data_column"==a.type&&(a.error_text="Missing columns in referenced dataset.");var c=a.data;c||(c=[],_.each(a.options,function(a){c.push({label:a[0],value:a[1]})}));var d=b.Select;switch(a.display){case"checkboxes":d=b.Checkbox;break;case"radio":d=b.Radio;break;case"radiobutton":d=b.RadioButton}return new d.View({id:"field-"+a.id,data:c,error_text:a.error_text||"No options available",multiple:a.multiple,optional:a.optional,onchange:a.onchange,searchable:"workflow"!==a.flavor})},_fieldDrilldown:function(a){return a.is_workflow?this._fieldText(a):new b.Drilldown.View({id:"field-"+a.id,data:a.options,display:a.display,optional:a.optional,onchange:a.onchange})},_fieldText:function(c){if(c.options&&c.data)if(c.area=c.multiple,a.isEmpty(c.value))c.value=null;else if($.isArray(c.value)){var d="";for(var e in c.value){if(d+=String(c.value[e]),!c.multiple)break;d+="\n"}c.value=d}return new b.Input({id:"field-"+c.id,area:c.area,placeholder:c.placeholder,onchange:c.onchange})},_fieldSlider:function(a){return new b.Slider.View({id:"field-"+a.id,precise:"float"==a.type,is_workflow:a.is_workflow,min:a.min,max:a.max,onchange:a.onchange})},_fieldHidden:function(a){return new b.Hidden({id:"field-"+a.id,info:a.info})},_fieldBoolean:function(a){return new b.RadioButton.View({id:"field-"+a.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:a.onchange})},_fieldColor:function(a){return new f({id:"field-"+a.id,onchange:a.onchange})},_fieldLibrary:function(a){return new d.View({id:"field-"+a.id,optional:a.optional,multiple:a.multiple,onchange:a.onchange})},_fieldFtp:function(a){return new e.View({id:"field-"+a.id,optional:a.optional,multiple:a.multiple,onchange:a.onchange})}})});
|
||||
define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-select-content","mvc/ui/ui-select-library","mvc/ui/ui-select-ftp","mvc/ui/ui-color-picker"],function(a,b,c,d,e,f){return Backbone.Model.extend({types:{text:"_fieldText",password:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider","float":"_fieldSlider","boolean":"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp"},create:function(a){var b=this.types[a.type],c="function"==typeof this[b]?this[b].call(this,a):null;return c||(c=a.options?this._fieldSelect(a):this._fieldText(a),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+a.type+").")),void 0===a.value&&(a.value=null),c.value(a.value),c},_fieldData:function(a){return new c.View({id:"field-"+a.id,extensions:a.extensions,optional:a.optional,multiple:a.multiple,type:a.type,flavor:a.flavor,data:a.options,onchange:a.onchange})},_fieldSelect:function(a){if(a.is_workflow)return this._fieldText(a);"data_column"==a.type&&(a.error_text="Missing columns in referenced dataset.");var c=a.data;c||(c=[],_.each(a.options,function(a){c.push({label:a[0],value:a[1]})}));var d=b.Select;switch(a.display){case"checkboxes":d=b.Checkbox;break;case"radio":d=b.Radio;break;case"radiobutton":d=b.RadioButton}return new d.View({id:"field-"+a.id,data:c,error_text:a.error_text||"No options available",multiple:a.multiple,optional:a.optional,onchange:a.onchange,searchable:"workflow"!==a.flavor})},_fieldDrilldown:function(a){return a.is_workflow?this._fieldText(a):new b.Drilldown.View({id:"field-"+a.id,data:a.options,display:a.display,optional:a.optional,onchange:a.onchange})},_fieldText:function(c){if(c.options&&c.data)if(c.area=c.multiple,a.isEmpty(c.value))c.value=null;else if($.isArray(c.value)){var d="";for(var e in c.value){if(d+=String(c.value[e]),!c.multiple)break;d+="\n"}c.value=d}return new b.Input({id:"field-"+c.id,type:c.type,area:c.area,readonly:c.readonly,placeholder:c.placeholder,onchange:c.onchange})},_fieldSlider:function(a){return new b.Slider.View({id:"field-"+a.id,precise:"float"==a.type,is_workflow:a.is_workflow,min:a.min,max:a.max,onchange:a.onchange})},_fieldHidden:function(a){return new b.Hidden({id:"field-"+a.id,info:a.info})},_fieldBoolean:function(a){return new b.RadioButton.View({id:"field-"+a.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:a.onchange})},_fieldColor:function(a){return new f({id:"field-"+a.id,onchange:a.onchange})},_fieldLibrary:function(a){return new d.View({id:"field-"+a.id,optional:a.optional,multiple:a.multiple,onchange:a.onchange})},_fieldFtp:function(a){return new e.View({id:"field-"+a.id,optional:a.optional,multiple:a.multiple,onchange:a.onchange})}})});
|
||||
//# sourceMappingURL=../../../maps/mvc/form/form-parameters.js.map
|
||||
@@ -1,2 +1,2 @@
|
||||
define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-portlet","mvc/form/form-repeat","mvc/form/form-input","mvc/form/form-parameters"],function(a,b,c,d,e,f){var g=Backbone.View.extend({initialize:function(a,b){this.app=a,this.inputs=b.inputs,this.parameters=new f,this.setElement($("<div/>")),this.render()},render:function(){var a=this;this.$el.empty(),_.each(this.inputs,function(b){a.add(b)})},add:function(b){var c=jQuery.extend(!0,{},b);switch(c.id=b.id=a.uid(),this.app.input_list[c.id]=c,c.type){case"conditional":this._addConditional(c);break;case"repeat":this._addRepeat(c);break;case"section":this._addSection(c);break;default:this._addRow(c)}},_addConditional:function(a){var b=this;a.test_param.id=a.id,this.app.options.sustain_conditionals&&(a.test_param.disabled=!0);var c=this._addRow(a.test_param);c.model&&c.model.set("onchange",function(c){var d=b.app.data.matchCase(a,c);for(var e in a.cases){var f=a.cases[e],g=b.$("#"+a.id+"-section-"+e),h=!1;for(var i in f.inputs)if(!f.inputs[i].hidden){h=!0;break}e==d&&h?g.fadeIn("fast"):g.hide()}b.app.trigger("change")});for(var d in a.cases){var e=new g(this.app,{inputs:a.cases[d].inputs});this._append(e.$el.addClass("ui-form-section"),a.id+"-section-"+d)}c.trigger("change")},_addRepeat:function(a){function b(b){var d=a.id+"-section-"+f++,e=new g(c.app,{inputs:b});h.add({id:d,$el:e.$el,ondel:function(){h.del(d),c.app.trigger("change")}})}for(var c=this,f=0,h=new d.View({title:a.title||"Repeat",min:a.min,max:a.max,onnew:function(){b(a.inputs),c.app.trigger("change")}}),i=_.size(a.cache),j=0;j<Math.max(Math.max(i,a.min),a.default||0);j++)b(i>j?a.cache[j]:a.inputs);this.app.options.sustain_repeats&&h.hideOptions();var k=new e(this.app,{label:a.title||a.name,help:a.help,field:h});this._append(k.$el,a.id)},_addSection:function(a){var b=new c.View({title:a.title||a.name,cls:"ui-portlet-section",collapsible:!0,collapsible_button:!0,collapsed:!a.expanded});b.append(new g(this.app,{inputs:a.inputs}).$el),b.append($("<div/>").addClass("ui-form-info").html(a.help)),this.app.on("expand",function(a){b.$("#"+a).length>0&&b.expand()}),this._append(b.$el,a.id)},_addRow:function(a){var b=this,c=a.id;a.onchange=function(){b.app.trigger("change",c)};var d=this.parameters.create(a);this.app.field_list[c]=d;var f=new e(this.app,{name:a.name,label:a.label||a.name,value:a.value,text_value:a.text_value,collapsible_value:a.collapsible_value,collapsible_preview:a.collapsible_preview,help:a.help,argument:a.argument,disabled:a.disabled,color:a.color,style:a.style,backdrop:a.backdrop,hidden:a.hidden,field:d});return this.app.element_list[c]=f,this._append(f.$el,a.id),d},_append:function(a,b){this.$el.append(a.addClass("section-row").attr("id",b))}});return{View:g}});
|
||||
define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-portlet","mvc/form/form-repeat","mvc/form/form-input","mvc/form/form-parameters"],function(a,b,c,d,e,f){var g=Backbone.View.extend({initialize:function(a,b){this.app=a,this.inputs=b.inputs,this.parameters=new f,this.setElement($("<div/>")),this.render()},render:function(){var a=this;this.$el.empty(),_.each(this.inputs,function(b){a.add(b)})},add:function(b){var c=jQuery.extend(!0,{},b);switch(c.id=b.id=a.uid(),this.app.input_list[c.id]=c,c.type){case"conditional":this._addConditional(c);break;case"repeat":this._addRepeat(c);break;case"section":this._addSection(c);break;default:this._addRow(c)}},_addConditional:function(a){var b=this;a.test_param.id=a.id,this.app.options.sustain_conditionals&&(a.test_param.disabled=!0);var c=this._addRow(a.test_param);c.model&&c.model.set("onchange",function(c){var d=b.app.data.matchCase(a,c);for(var e in a.cases){var f=a.cases[e],g=b.$("#"+a.id+"-section-"+e),h=!1;for(var i in f.inputs)if(!f.inputs[i].hidden){h=!0;break}e==d&&h?g.fadeIn("fast"):g.hide()}b.app.trigger("change")});for(var d in a.cases){var e=new g(this.app,{inputs:a.cases[d].inputs});this._append(e.$el.addClass("ui-form-section"),a.id+"-section-"+d)}c.trigger("change")},_addRepeat:function(a){function b(b){var d=a.id+"-section-"+f++,e=new g(c.app,{inputs:b});h.add({id:d,$el:e.$el,ondel:function(){h.del(d),c.app.trigger("change")}})}for(var c=this,f=0,h=new d.View({title:a.title||"Repeat",min:a.min,max:a.max,onnew:function(){b(a.inputs),c.app.trigger("change")}}),i=_.size(a.cache),j=0;j<Math.max(Math.max(i,a.min||0),a.default||0);j++)b(i>j?a.cache[j]:a.inputs);this.app.options.sustain_repeats&&h.hideOptions();var k=new e(this.app,{label:a.title||a.name,help:a.help,field:h});this._append(k.$el,a.id)},_addSection:function(a){var b=new c.View({title:a.title||a.name,cls:"ui-portlet-section",collapsible:!0,collapsible_button:!0,collapsed:!a.expanded});b.append(new g(this.app,{inputs:a.inputs}).$el),b.append($("<div/>").addClass("ui-form-info").html(a.help)),this.app.on("expand",function(a){b.$("#"+a).length>0&&b.expand()}),this._append(b.$el,a.id)},_addRow:function(a){var b=this,c=a.id;a.onchange=function(){b.app.trigger("change",c)};var d=this.parameters.create(a);this.app.field_list[c]=d;var f=new e(this.app,{name:a.name,label:a.label||a.name,value:a.value,text_value:a.text_value,collapsible_value:a.collapsible_value,collapsible_preview:a.collapsible_preview,help:a.help,argument:a.argument,disabled:a.disabled,color:a.color,style:a.style,backdrop:a.backdrop,hidden:a.hidden,field:d});return this.app.element_list[c]=f,this._append(f.$el,a.id),d},_append:function(a,b){this.$el.append(a.addClass("section-row").attr("id",b))}});return{View:g}});
|
||||
//# sourceMappingURL=../../../maps/mvc/form/form-section.js.map
|
||||
@@ -1,2 +1,2 @@
|
||||
define(["utils/utils","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/form/form-section","mvc/form/form-data"],function(a,b,c,d,e){return Backbone.View.extend({initialize:function(b){this.options=a.merge(b,{initial_errors:!1,cls:"ui-portlet-limited",icon:null,always_refresh:!0}),this.setElement("<div/>"),this.render()},update:function(a){var b=this;this.data.matchModel(a,function(a,c){var d=b.input_list[c];if(d&&d.options&&!_.isEqual(d.options,a.options)){d.options=a.options;var e=b.field_list[c];if(e.update){var f=[];if(-1!=["data","data_collection","drill_down"].indexOf(d.type))f=d.options;else for(var g in a.options){var h=a.options[g];h.length>2&&f.push({label:h[0],value:h[1]})}e.update(f),e.trigger("change"),Galaxy.emit.debug("form-view::update()","Updating options for "+c)}}})},wait:function(a){for(var b in this.input_list){var c=this.field_list[b],d=this.input_list[b];d.is_dynamic&&c.wait&&c.unwait&&c[a?"wait":"unwait"]()}},highlight:function(a,b,c){var d=this.element_list[a];if(d&&(d.error(b||"Please verify this parameter."),this.portlet.expand(),this.trigger("expand",a),!c)){var e=this.$el.parents().filter(function(){return-1!=["auto","scroll"].indexOf($(this).css("overflow"))}).first();e.animate({scrollTop:e.scrollTop()+d.$el.offset().top-120},500)}},errors:function(a){if(this.trigger("reset"),a&&a.errors){var b=this.data.matchResponse(a.errors);for(var c in this.element_list){{this.element_list[c]}b[c]&&this.highlight(c,b[c],!0)}}},render:function(){var a=this;this.off("change"),this.off("reset"),this.field_list={},this.input_list={},this.element_list={},this.data=new e.Manager(this),this._renderForm(),this.data.create(),this.options.initial_errors&&this.errors(this.options);var b=this.data.checksum();return this.on("change",function(c){var d=a.input_list[c];if(!d||d.refresh_on_change||a.options.always_refresh){var e=a.data.checksum();e!=b&&(b=e,a.options.onchange&&a.options.onchange())}}),this.on("reset",function(){_.each(a.element_list,function(a){a.reset()})}),this},_renderForm:function(){$(".tooltip").remove(),this.message=new c.Message,this.section=new d.View(this,{inputs:this.options.inputs}),this.portlet=new b.View({icon:this.options.icon,title:this.options.title,cls:this.options.cls,operations:this.options.operations,buttons:this.options.buttons,collapsible:this.options.collapsible,collapsed:this.options.collapsed}),this.portlet.append(this.message.$el),this.portlet.append(this.section.$el),this.$el.empty(),this.options.inputs&&this.$el.append(this.portlet.$el),this.options.message&&this.message.update({persistent:!0,status:"warning",message:this.options.message}),Galaxy.emit.debug("form-view::initialize()","Completed")}})});
|
||||
define(["utils/utils","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/form/form-section","mvc/form/form-data"],function(a,b,c,d,e){return Backbone.View.extend({initialize:function(b){this.options=a.merge(b,{initial_errors:!1,cls:"ui-portlet-limited",icon:null,always_refresh:!0}),this.setElement("<div/>"),this.render()},update:function(a){var b=this;this.data.matchModel(a,function(a,c){var d=b.input_list[c];if(d&&d.options&&!_.isEqual(d.options,a.options)){d.options=a.options;var e=b.field_list[c];if(e.update){var f=[];if(["data","data_collection","drill_down"].indexOf(d.type)!=-1)f=d.options;else for(var g in a.options){var h=a.options[g];h.length>2&&f.push({label:h[0],value:h[1]})}e.update(f),e.trigger("change"),Galaxy.emit.debug("form-view::update()","Updating options for "+c)}}})},wait:function(a){for(var b in this.input_list){var c=this.field_list[b],d=this.input_list[b];d.is_dynamic&&c.wait&&c.unwait&&c[a?"wait":"unwait"]()}},highlight:function(a,b,c){var d=this.element_list[a];if(d&&(d.error(b||"Please verify this parameter."),this.portlet.expand(),this.trigger("expand",a),!c)){var e=this.$el.parents().filter(function(){return["auto","scroll"].indexOf($(this).css("overflow"))!=-1}).first();e.animate({scrollTop:e.scrollTop()+d.$el.offset().top-120},500)}},errors:function(a){if(this.trigger("reset"),a&&a.errors){var b=this.data.matchResponse(a.errors);for(var c in this.element_list){this.element_list[c];b[c]&&this.highlight(c,b[c],!0)}}},render:function(){var a=this;this.off("change"),this.off("reset"),this.field_list={},this.input_list={},this.element_list={},this.data=new e.Manager(this),this._renderForm(),this.data.create(),this.options.initial_errors&&this.errors(this.options);var b=this.data.checksum();return this.on("change",function(c){var d=a.input_list[c];if(!d||d.refresh_on_change||a.options.always_refresh){var e=a.data.checksum();e!=b&&(b=e,a.options.onchange&&a.options.onchange())}}),this.on("reset",function(){_.each(a.element_list,function(a){a.reset()})}),this},_renderForm:function(){$(".tooltip").remove(),this.message=new c.Message,this.section=new d.View(this,{inputs:this.options.inputs}),this.portlet=new b.View({icon:this.options.icon,title:this.options.title,cls:this.options.cls,operations:this.options.operations,buttons:this.options.buttons,collapsible:this.options.collapsible,collapsed:this.options.collapsed}),this.portlet.append(this.message.$el),this.portlet.append(this.section.$el),this.$el.empty(),this.options.inputs&&this.$el.append(this.portlet.$el),this.options.message&&this.message.update({persistent:!0,status:"warning",message:this.options.message}),Galaxy.emit.debug("form-view::initialize()","Completed")}})});
|
||||
//# sourceMappingURL=../../../maps/mvc/form/form-view.js.map
|
||||
@@ -1,2 +1,2 @@
|
||||
define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-buttons","mvc/ui/ui-modal"],function(a,b,c,d,e,f,g){var h=Backbone.View.extend({tagName:"label",initialize:function(a){this.model=a&&a.model||new Backbone.Model(a),this.tagName=a.tagName||this.tagName,this.setElement($("<"+this.tagName+"/>")),this.listenTo(this.model,"change",this.render,this),this.render()},title:function(a){this.model.set("title",a)},value:function(){return this.model.get("title")},render:function(){return this.$el.removeClass().addClass("ui-label").addClass(this.model.get("cls")).html(this.model.get("title")),this}}),i=Backbone.View.extend({initialize:function(a){this.model=a&&a.model||new Backbone.Model({message:null,status:"info",cls:"",persistent:!1,fade:!0}).set(a),this.listenTo(this.model,"change",this.render,this),this.render()},update:function(a){this.model.set(a)},render:function(){this.$el.removeClass().addClass("ui-message").addClass(this.model.get("cls"));var a=this.model.get("status");if(this.model.get("large")?this.$el.addClass(("success"==a&&"done"||"danger"==a&&"error"||a)+"messagelarge"):this.$el.addClass("alert").addClass("alert-"+a),this.model.get("message")){if(this.$el.html(this.model.get("message")),this.$el[this.model.get("fade")?"fadeIn":"show"](),this.timeout&&window.clearTimeout(this.timeout),!this.model.get("persistent")){var b=this;this.timeout=window.setTimeout(function(){b.model.set("message","")},3e3)}}else this.$el.fadeOut();return this}}),j=Backbone.View.extend({initialize:function(a){this.model=a&&a.model||new Backbone.Model({type:"text",placeholder:"",disabled:!1,visible:!0,cls:"",area:!1,color:null,style:null}).set(a),this.tagName=this.model.get("area")?"textarea":"input",this.setElement($("<"+this.tagName+"/>")),this.listenTo(this.model,"change",this.render,this),this.render()},events:{input:"_onchange"},value:function(a){return void 0!==a&&this.model.set("value","string"==typeof a?a:""),this.model.get("value")},render:function(){return this.$el.removeClass().addClass("ui-"+this.tagName).addClass(this.model.get("cls")).addClass(this.model.get("style")).attr("id",this.model.id).attr("type",this.model.get("type")).attr("placeholder",this.model.get("placeholder")).css("color",this.model.get("color")||"").css("border-color",this.model.get("color")||""),this.model.get("value")!==this.$el.val()&&this.$el.val(this.model.get("value")),this.model.get("disabled")?this.$el.attr("disabled",!0):this.$el.removeAttr("disabled"),this.$el[this.model.get("visible")?"show":"hide"](),this},_onchange:function(){this.value(this.$el.val()),this.model.get("onchange")&&this.model.get("onchange")(this.model.get("value"))}}),k=Backbone.View.extend({initialize:function(a){this.model=a&&a.model||new Backbone.Model(a),this.setElement($("<div/>").append(this.$info=$("<div/>")).append(this.$hidden=$("<div/>"))),this.listenTo(this.model,"change",this.render,this),this.render()},value:function(a){return void 0!==a&&this.model.set("value",a),this.model.get("value")},render:function(){return this.$el.attr("id",this.model.id),this.$hidden.val(this.model.get("value")),this.model.get("info")?this.$info.show().html(this.model.get("info")):this.$info.hide(),this}});return{Button:f.ButtonDefault,ButtonIcon:f.ButtonIcon,ButtonCheck:f.ButtonCheck,ButtonMenu:f.ButtonMenu,ButtonLink:f.ButtonLink,Input:j,Label:h,Message:i,Modal:g,RadioButton:d.RadioButton,Checkbox:d.Checkbox,Radio:d.Radio,Select:b,Hidden:k,Slider:c,Drilldown:e}});
|
||||
define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-buttons","mvc/ui/ui-modal"],function(a,b,c,d,e,f,g){var h=Backbone.View.extend({tagName:"label",initialize:function(a){this.model=a&&a.model||new Backbone.Model(a),this.tagName=a.tagName||this.tagName,this.setElement($("<"+this.tagName+"/>")),this.listenTo(this.model,"change",this.render,this),this.render()},title:function(a){this.model.set("title",a)},value:function(){return this.model.get("title")},render:function(){return this.$el.removeClass().addClass("ui-label").addClass(this.model.get("cls")).html(this.model.get("title")),this}}),i=Backbone.View.extend({initialize:function(a){this.model=a&&a.model||new Backbone.Model({message:null,status:"info",cls:"",persistent:!1,fade:!0}).set(a),this.listenTo(this.model,"change",this.render,this),this.render()},update:function(a){this.model.set(a)},render:function(){this.$el.removeClass().addClass("ui-message").addClass(this.model.get("cls"));var a=this.model.get("status");if(this.model.get("large")?this.$el.addClass(("success"==a&&"done"||"danger"==a&&"error"||a)+"messagelarge"):this.$el.addClass("alert").addClass("alert-"+a),this.model.get("message")){if(this.$el.html(this.model.get("message")),this.$el[this.model.get("fade")?"fadeIn":"show"](),this.timeout&&window.clearTimeout(this.timeout),!this.model.get("persistent")){var b=this;this.timeout=window.setTimeout(function(){b.model.set("message","")},3e3)}}else this.$el.fadeOut();return this}}),j=Backbone.View.extend({initialize:function(a){this.model=a&&a.model||new Backbone.Model({type:"text",placeholder:"",disabled:!1,readonly:!1,visible:!0,cls:"",area:!1,color:null,style:null}).set(a),this.tagName=this.model.get("area")?"textarea":"input",this.setElement($("<"+this.tagName+"/>")),this.listenTo(this.model,"change",this.render,this),this.render()},events:{input:"_onchange"},value:function(a){return void 0!==a&&this.model.set("value","string"==typeof a?a:""),this.model.get("value")},render:function(){var a=this;return this.$el.removeClass().addClass("ui-"+this.tagName).addClass(this.model.get("cls")).addClass(this.model.get("style")).attr("id",this.model.id).attr("type",this.model.get("type")).attr("placeholder",this.model.get("placeholder")).css("color",this.model.get("color")||"").css("border-color",this.model.get("color")||""),this.model.get("value")!==this.$el.val()&&this.$el.val(this.model.get("value")),_.each(["readonly","disabled"],function(b){a.model.get(b)?a.$el.attr(b,!0):a.$el.removeAttr(b)}),this.$el[this.model.get("visible")?"show":"hide"](),this},_onchange:function(){this.value(this.$el.val()),this.model.get("onchange")&&this.model.get("onchange")(this.model.get("value"))}}),k=Backbone.View.extend({initialize:function(a){this.model=a&&a.model||new Backbone.Model(a),this.setElement($("<div/>").append(this.$info=$("<div/>")).append(this.$hidden=$("<div/>"))),this.listenTo(this.model,"change",this.render,this),this.render()},value:function(a){return void 0!==a&&this.model.set("value",a),this.model.get("value")},render:function(){return this.$el.attr("id",this.model.id),this.$hidden.val(this.model.get("value")),this.model.get("info")?this.$info.show().html(this.model.get("info")):this.$info.hide(),this}});return{Button:f.ButtonDefault,ButtonIcon:f.ButtonIcon,ButtonCheck:f.ButtonCheck,ButtonMenu:f.ButtonMenu,ButtonLink:f.ButtonLink,Input:j,Label:h,Message:i,Modal:g,RadioButton:d.RadioButton,Checkbox:d.Checkbox,Radio:d.Radio,Select:b,Hidden:k,Slider:c,Drilldown:e}});
|
||||
//# sourceMappingURL=../../../maps/mvc/ui/ui-misc.js.map
|
||||
@@ -0,0 +1,2 @@
|
||||
define(["mvc/form/form-view","mvc/ui/ui-misc"],function(a,b){var c=Backbone.View.extend({initialize:function(){this.defs={information:{title:"Manage information",description:"Edit your email, addresses and custom parameters or change your username.",url:"api/users/"+Galaxy.user.id+"/information/inputs",icon:"fa-user"},password:{title:"Change password",description:"Allows you to change your login credentials.",icon:"fa-unlock-alt",url:"api/users/"+Galaxy.user.id+"/password/inputs",submit_title:"Save password"},communication:{title:"Change communication settings",description:"Enable or disable the communication feature to chat with other users.",url:"api/users/"+Galaxy.user.id+"/communication/inputs",icon:"fa-comments-o"},permissions:{title:"Set dataset permissions for new histories",description:"Grant others default access to newly created histories. Changes made here will only affect histories created after these settings have been stored.",url:"api/users/"+Galaxy.user.id+"/permissions/inputs",icon:"fa-users",submit_title:"Save permissions"},api_key:{title:"Manage API key",description:"Access your current API key or create a new one.",url:"api/users/"+Galaxy.user.id+"/api_key/inputs",icon:"fa-key",submit_title:"Create a new key",submit_icon:"fa-check"},toolbox_filters:{title:"Manage Toolbox filters",description:"Customize your Toolbox by displaying or omitting sets of Tools.",url:"api/users/"+Galaxy.user.id+"/toolbox_filters/inputs",icon:"fa-filter",submit_title:"Save filters"},openids:{title:"Manage OpenIDs",description:"Associate OpenIDs with your account.",icon:"fa-openid",onclick:function(){window.location.href=Galaxy.root+"user/openid_manage?cntrller=user&use_panels=True"}},logout:{title:"Sign out",description:"Click here to sign out of all sessions.",icon:"fa-sign-out",onclick:function(){Galaxy.modal.show({title:"Sign out",body:"Do you want to continue and sign out of all active sessions?",buttons:{Cancel:function(){Galaxy.modal.hide()},"Sign out":function(){window.location.href=Galaxy.root+"user/logout"}}})}}},this.message=new b.Message,this.setElement("<div/>"),this.render()},render:function(){var a=this,b=Galaxy.config;$.getJSON(Galaxy.root+"api/users/"+Galaxy.user.id,function(c){a.$preferences=$("<div/>").addClass("ui-panel").append(a.message.$el).append($("<h2/>").append("User preferences")).append($("<p/>").append("You are logged in as <strong>"+_.escape(c.email)+"</strong>.")).append(a.$table=$("<table/>").addClass("ui-panel-table")),b.use_remote_user||(a._link(a.defs.information),a._link(a.defs.password)),b.enable_communication_server&&a._link(a.defs.communication),a._link(a.defs.permissions),a._link(a.defs.api_key),b.has_user_tool_filters&&a._link(a.defs.toolbox_filters),b.enable_openid&&!b.use_remote_user&&a._link(a.defs.openids),a._link(a.defs.logout),a.$preferences.append(a._templateFooter(c)),a.$el.empty().append(a.$preferences)})},_link:function(c){var d=this,e=$(this._templateRow(c));this.$table.append(e),e.find("a").on("click",function(){c.url?$.ajax({url:Galaxy.root+c.url,type:"GET"}).done(function(e){var f=$.extend({},c,e),g=new a({title:f.title,icon:f.icon,inputs:f.inputs,operations:{submit:new b.ButtonIcon({tooltip:f.submit_tooltip,title:f.submit_title||"Save settings",icon:f.submit_icon||"fa-save",onclick:function(){d._submit(g,f)}}),back:new b.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to user preferences",title:"Preferences",onclick:function(){g.remove(),d.$preferences.show()}})}});d.$preferences.hide(),d.$el.append(g.$el)}).fail(function(a){d.message.update({message:"Failed to load resource "+c.url+".",status:"danger"})}):c.onclick()})},_submit:function(a,b){var c=this;$.ajax({url:b.url,data:JSON.stringify(a.data.create()),type:"PUT",contentType:"application/json"}).done(function(b){var d=!1;a.data.matchModel(b,function(b,c){a.field_list[c].value(b.value),d=!0}),d?a.message.update({message:b.message,status:"success"}):(a.remove(),c.$preferences.show(),c.message.update({message:b.message,status:"success"}))}).fail(function(b){a.message.update({message:b.responseJSON.err_msg,status:"danger"})})},_templateRow:function(a){return'<tr><td><div class="ui-panel-icon fa '+a.icon+'"></td><td><a class="ui-panel-anchor" href="javascript:void(0)">'+a.title+'</a><div class="ui-form-info">'+a.description+"</div></td></tr>"},_templateFooter:function(a){return'<p class="ui-panel-footer">You are using <strong>'+a.nice_total_disk_usage+"</strong> of disk space in this Galaxy instance. "+(Galaxy.config.enable_quotas?"Your disk quota is: <strong>"+a.quota+"</strong>. ":"")+'Is your usage more than expected? See the <a href="https://wiki.galaxyproject.org/Learn/ManagingDatasets" target="_blank">documentation</a> for tips on how to find all of the data in your account.</p>'}});return{View:c}});
|
||||
//# sourceMappingURL=../../../maps/mvc/user/user-preferences.js.map
|
||||
File diff suppressed because one or more lines are too long
@@ -1,19 +0,0 @@
|
||||
<%inherit file="/base.mako"/>
|
||||
<%namespace file="/message.mako" import="render_msg" />
|
||||
|
||||
%if message:
|
||||
${render_msg( message, status )}
|
||||
%endif
|
||||
|
||||
<div class="toolForm">
|
||||
<form name="change_communication" id="change_communication" action="${h.url_for( controller='user', action='change_communication', cntrller=cntrller )}" method="post" >
|
||||
<div class="toolFormTitle">Change your communication settings</div>
|
||||
<div class="form-row">
|
||||
<label>Activate real-time communication with other Galaxy users.</label>
|
||||
<input type="checkbox" name="enable_communication_server" ${activated} />
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<input type="submit" name="change_communication_button" value="Save"/>
|
||||
</div>
|
||||
</form>
|
||||
</div>
|
||||
@@ -1,96 +0,0 @@
|
||||
<%inherit file="/base.mako"/>
|
||||
<%namespace file="/message.mako" import="render_msg" />
|
||||
|
||||
%if message:
|
||||
${render_msg( message, status )}
|
||||
%endif
|
||||
</br>
|
||||
</br>
|
||||
<h3>Edit address</h3>
|
||||
|
||||
<ul class="manage-table-actions">
|
||||
<li>
|
||||
<a class="action-button" href="${h.url_for( controller='user', action='manage_user_info', cntrller=cntrller, id=trans.security.encode_id( user.id) )}">Manage user information</a>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="toolForm">
|
||||
<div class="toolFormTitle">Edit address</div>
|
||||
<div class="toolFormBody">
|
||||
<form name="login_info" id="login_info" action="${h.url_for( controller='user', action='edit_address', cntrller=cntrller, address_id=trans.security.encode_id( address_obj.id ), id=trans.security.encode_id( user.id ) )}" method="post" >
|
||||
<div class="form-row">
|
||||
<label>Short Description:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="short_desc" value="${address_obj.desc | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>Name:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="name" value="${address_obj.name | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>Institution:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="institution" value="${address_obj.institution | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>Address:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="address" value="${address_obj.address | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>City:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="city" value="${address_obj.city | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>State/Province/Region:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="state" value="${address_obj.state | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>Postal Code:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="postal_code" value="${address_obj.postal_code | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>Country:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="country" value="${address_obj.country | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>Phone:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="phone" value="${address_obj.phone | h}" size="40">
|
||||
</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<input type="submit" name="edit_address_button" value="Save changes">
|
||||
</div>
|
||||
</form>
|
||||
</div>
|
||||
</div>
|
||||
@@ -1,97 +0,0 @@
|
||||
<%inherit file="/base.mako"/>
|
||||
<%namespace file="/message.mako" import="render_msg" />
|
||||
|
||||
%if message:
|
||||
${render_msg( message, status )}
|
||||
%endif
|
||||
</br>
|
||||
</br>
|
||||
<h3>Add new address</h3>
|
||||
|
||||
<ul class="manage-table-actions">
|
||||
<li>
|
||||
<a class="action-button" href="${h.url_for( controller='user', action='manage_user_info', cntrller=cntrller, id=trans.security.encode_id( user.id) )}">
|
||||
<span>Manage User Information</span></a>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="toolForm">
|
||||
<div class="toolFormTitle">Add new address</div>
|
||||
<div class="toolFormBody">
|
||||
<form name="login_info" id="login_info" action="${h.url_for( controller='user', action='new_address', cntrller=cntrller, id=trans.security.encode_id( user.id ) )}" method="post" >
|
||||
<div class="form-row">
|
||||
<label>Short Description:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="short_desc" value="${short_desc | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>Name:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="name" value="${name | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>Institution:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="institution" value="${institution | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>Address:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="address" value="${address | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>City:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="city" value="${city | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>State/Province/Region:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="state" value="${state | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>Postal Code:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="postal_code" value="${postal_code | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>Country:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="country" value="${country | h}" size="40">
|
||||
</div>
|
||||
<div class="toolParamHelp" style="clear: both;">Required</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<label>Phone:</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="phone" value="${phone | h}" size="40">
|
||||
</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<input type="submit" name="new_address_button" value="Save">
|
||||
</div>
|
||||
</form>
|
||||
</div>
|
||||
</div>
|
||||
@@ -1,19 +0,0 @@
|
||||
<%inherit file="/base.mako"/>
|
||||
<%namespace file="/message.mako" import="render_msg" />
|
||||
<%namespace file="/dataset/security_common.mako" import="render_permission_form" />
|
||||
|
||||
<%def name="title()">Change Default Permissions on New Histories</%def>
|
||||
|
||||
%if message:
|
||||
${render_msg( message, status )}
|
||||
%endif
|
||||
|
||||
<br/><br/>
|
||||
<ul class="manage-table-actions">
|
||||
<li>
|
||||
<a class="action-button" href="${h.url_for( controller='user', cntrller=cntrller, action='index')}">User preferences</a>
|
||||
</li>
|
||||
</ul>
|
||||
%if trans.user:
|
||||
${render_permission_form( trans.user, trans.user.email, h.url_for( controller='user', action='set_default_permissions', cntrller=cntrller ), trans.user.all_roles() )}
|
||||
%endif
|
||||
@@ -176,27 +176,6 @@ def inherit(context):
|
||||
all Galaxy project mailing lists</a>.</p>
|
||||
</div>
|
||||
%endif
|
||||
%if user_type_fd_id_select_field and len( user_type_fd_id_select_field.options ) >= 1:
|
||||
<div class="form-row">
|
||||
<label>User type</label>
|
||||
${user_type_fd_id_select_field.get_html()}
|
||||
</div>
|
||||
%endif
|
||||
%if user_type_form_definition:
|
||||
%for field in widgets:
|
||||
<div class="form-row">
|
||||
<label>${field['label']}</label>
|
||||
${field['widget'].get_html()}
|
||||
<div class="toolParamHelp" style="clear: both;">
|
||||
${field['helptext']}
|
||||
</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
%endfor
|
||||
%if not user_type_fd_id_select_field:
|
||||
<input type="hidden" name="user_type_fd_id" value="${trans.security.encode_id( user_type_form_definition.id )}"/>
|
||||
%endif
|
||||
%endif
|
||||
<div id="for_bears">
|
||||
If you see this, please leave following field blank.
|
||||
<input type="text" name="bear_field" size="1" value=""/>
|
||||
|
||||
@@ -1,91 +0,0 @@
|
||||
<%inherit file="/base.mako"/>
|
||||
<%namespace file="/message.mako" import="render_msg" />
|
||||
|
||||
%if message:
|
||||
${render_msg( message, status )}
|
||||
%endif
|
||||
</br>
|
||||
</br>
|
||||
|
||||
<ul class="manage-table-actions">
|
||||
<li>
|
||||
<a class="action-button" href="${h.url_for( controller='user', action='index', cntrller=cntrller )}">User preferences</a>
|
||||
</li>
|
||||
</ul>
|
||||
|
||||
%if tool_filters or section_filters or label_filters:
|
||||
<div class="toolForm">
|
||||
<form name="toolbox_filter" id="toolbox_filter" action="${h.url_for( controller='user', action='edit_toolbox_filters', cntrller=cntrller )}" method="post" >
|
||||
% if tool_filters:
|
||||
<div class="toolFormTitle">Edit ToolBox filters :: Tools</div>
|
||||
<div class="toolFormBody">
|
||||
% for filter in tool_filters:
|
||||
<div class="form-row">
|
||||
<div style="float: left; width: 40px; margin-right: 10px;">
|
||||
% if filter['checked']:
|
||||
<input type="checkbox" name="t_${filter['filterpath']}" checked="checked">
|
||||
% else:
|
||||
<input type="checkbox" name="t_${filter['filterpath']}">
|
||||
% endif
|
||||
</div>
|
||||
<div style="float: left; margin-right: 10px;">
|
||||
${filter['short_desc']}
|
||||
<div class="toolParamHelp" style="clear: both;">${filter['desc']}</div>
|
||||
</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
% endfor
|
||||
</div>
|
||||
% endif
|
||||
|
||||
% if section_filters:
|
||||
<div class="toolFormTitle">Edit ToolBox filters :: Sections</div>
|
||||
<div class="toolFormBody">
|
||||
% for filter in section_filters:
|
||||
<div class="form-row">
|
||||
<div style="float: left; width: 40px; margin-right: 10px;">
|
||||
% if filter['checked']:
|
||||
<input type="checkbox" name="s_${filter['filterpath']}" checked="checked">
|
||||
% else:
|
||||
<input type="checkbox" name="s_${filter['filterpath']}">
|
||||
% endif
|
||||
</div>
|
||||
<div style="float: left; margin-right: 10px;">
|
||||
${filter['short_desc']}
|
||||
<div class="toolParamHelp" style="clear: both;">${filter['desc']}</div>
|
||||
</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
% endfor
|
||||
</div>
|
||||
% endif
|
||||
|
||||
% if label_filters:
|
||||
<div class="toolFormTitle">Edit ToolBox filters :: Labels</div>
|
||||
<div class="toolFormBody">
|
||||
% for filter in label_filters:
|
||||
<div class="form-row">
|
||||
<div style="float: left; width: 40px; margin-right: 10px;">
|
||||
% if filter['checked']:
|
||||
<input type="checkbox" name="l_${filter['filterpath']}" checked="checked">
|
||||
% else:
|
||||
<input type="checkbox" name="l_${filter['filterpath']}">
|
||||
% endif
|
||||
</div>
|
||||
<div style="float: left; margin-right: 10px;">
|
||||
${filter['short_desc']}
|
||||
<div class="toolParamHelp" style="clear: both;">${filter['desc']}</div>
|
||||
</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
% endfor
|
||||
</div>
|
||||
% endif
|
||||
<div class="form-row">
|
||||
<input type="submit" name="edit_toolbox_filter_button" value="Save changes">
|
||||
</div>
|
||||
</form>
|
||||
</div>
|
||||
%else:
|
||||
${render_msg( 'No filters available. Contact your system administrator or check your configuration file.', 'info' )}
|
||||
%endif
|
||||
@@ -1,95 +0,0 @@
|
||||
<%inherit file="/base.mako"/>
|
||||
<%namespace file="/user/info.mako" import="render_user_info" />
|
||||
<%namespace file="/message.mako" import="render_msg" />
|
||||
|
||||
%if message:
|
||||
${render_msg( message, status )}
|
||||
%endif
|
||||
|
||||
${render_user_info()}
|
||||
|
||||
%if user.values or user_info_forms:
|
||||
<p></p>
|
||||
<div class="toolForm">
|
||||
<form name="user_info" id="user_info" action="${h.url_for( controller='user', action='edit_info', cntrller=cntrller, user_id=trans.security.encode_id( user.id ) )}" method="post" >
|
||||
<div class="toolFormTitle">User information</div>
|
||||
%if user_type_fd_id_select_field and len( user_type_fd_id_select_field.options ) >= 1:
|
||||
<div class="form-row">
|
||||
<label>User type:</label>
|
||||
${user_type_fd_id_select_field.get_html()}
|
||||
</div>
|
||||
%else:
|
||||
<input type="hidden" name="user_type_fd_id" value="${trans.security.encode_id( user_type_fd_id )}"/>
|
||||
%endif
|
||||
%for field in widgets:
|
||||
<div class="form-row">
|
||||
<label>${field['label']}:</label>
|
||||
${field['widget'].get_html()}
|
||||
<div class="toolParamHelp" style="clear: both;">
|
||||
${field['helptext']}
|
||||
</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
%endfor
|
||||
<div class="form-row">
|
||||
<input type="submit" name="edit_user_info_button" value="Save"/>
|
||||
</div>
|
||||
</form>
|
||||
</div>
|
||||
<p></p>
|
||||
%endif
|
||||
|
||||
<p/>
|
||||
|
||||
<div class="toolForm">
|
||||
<form name="user_addresses" id="user_addresses" action="${h.url_for( controller='user', action='new_address', cntrller=cntrller, id=trans.security.encode_id( user.id ) )}" method="post" >
|
||||
<div class="toolFormTitle">User Addresses</div>
|
||||
<div class="toolFormBody">
|
||||
%if user.addresses:
|
||||
<div class="form-row">
|
||||
<div class="grid-header">
|
||||
%for i, filter in enumerate( ['Active', 'Deleted', 'All'] ):
|
||||
%if i > 0:
|
||||
<span>|</span>
|
||||
%endif
|
||||
%if show_filter == filter:
|
||||
<span class="filter"><a href="${h.url_for( controller='user', action='manage_user_info', cntrller=cntrller, show_filter=filter, id=trans.security.encode_id( user.id ) )}"><b>${filter}</b></a></span>
|
||||
%else:
|
||||
<span class="filter"><a href="${h.url_for( controller='user', action='manage_user_info', cntrller=cntrller, show_filter=filter, id=trans.security.encode_id( user.id ) )}">${filter}</a></span>
|
||||
%endif
|
||||
%endfor
|
||||
</div>
|
||||
</div>
|
||||
<table class="grid">
|
||||
<tbody>
|
||||
%for index, address in enumerate(addresses):
|
||||
<tr class="libraryRow libraryOrFolderRow" id="libraryRow">
|
||||
<td>
|
||||
<div class="form-row">
|
||||
<label>${address.desc | h}:</label>
|
||||
${address.get_html()}
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<ul class="manage-table-actions">
|
||||
<li>
|
||||
%if not address.deleted:
|
||||
<a class="action-button" href="${h.url_for( controller='user', action='edit_address', cntrller=cntrller, address_id=trans.security.encode_id( address.id ), id=trans.security.encode_id( user.id ) )}">Edit</a>
|
||||
<a class="action-button" href="${h.url_for( controller='user', action='delete_address', cntrller=cntrller, address_id=trans.security.encode_id( address.id ), id=trans.security.encode_id( user.id ) )}">Delete</a>
|
||||
%else:
|
||||
<a class="action-button" href="${h.url_for( controller='user', action='undelete_address', cntrller=cntrller, address_id=trans.security.encode_id( address.id ), id=trans.security.encode_id( user.id ) )}">Undelete</a>
|
||||
%endif
|
||||
</li>
|
||||
</ul>
|
||||
</div>
|
||||
</td>
|
||||
</tr>
|
||||
%endfor
|
||||
</tbody>
|
||||
</table>
|
||||
%endif
|
||||
<div class="form-row">
|
||||
<input type="submit" value="Add a new address">
|
||||
</div>
|
||||
</div>
|
||||
</form>
|
||||
</div>
|
||||
@@ -0,0 +1,21 @@
|
||||
<%inherit file="/base.mako"/>
|
||||
|
||||
%if trans.user:
|
||||
<h2>${_('User preferences')}</h2>
|
||||
<p>You are currently logged in as ${trans.user.email|h}.</p>
|
||||
<ul>
|
||||
<li><a href="${h.url_for( controller='user', action='manage_user_info', cntrller=cntrller )}">${_('Manage your information')}</a></li>
|
||||
<li><a href="${h.url_for( controller='user', action='change_password' )}">${_('Change your password')}</a></li>
|
||||
<li><a href="${h.url_for( controller='user', action='api_keys', cntrller=cntrller )}">${_('Manage your API keys')}</a></li>
|
||||
<li><a href="${h.url_for( controller='repository', action='manage_email_alerts', cntrller=cntrller )}">${_('Manage your email alerts')}</a></li>
|
||||
<li><a href="${h.url_for( controller='user', action='logout', logout_all=True )}" target="_top">${_('Logout')}</a> ${_('of all user sessions')}</li>
|
||||
</ul>
|
||||
%else:
|
||||
%if not message:
|
||||
<p>${n_('You are currently not logged in.')}</p>
|
||||
%endif
|
||||
<ul>
|
||||
<li><a href="${h.url_for( controller='user', action='login' )}">${_('Login')}</li>
|
||||
<li><a href="${h.url_for( controller='user', action='create', cntrller='user' )}">${_('Register')}</a></li>
|
||||
</ul>
|
||||
%endif
|
||||
+33
-2
@@ -1,6 +1,6 @@
|
||||
import json
|
||||
|
||||
from requests import put
|
||||
from requests import put, get
|
||||
|
||||
from base import api
|
||||
|
||||
@@ -63,13 +63,44 @@ class UsersApiTestCase( api.ApiTestCase ):
|
||||
def test_admin_update( self ):
|
||||
new_name = 'flexo'
|
||||
user = self._setup_user( TEST_USER_EMAIL )
|
||||
|
||||
update_url = self._api_url( "users/%s" % ( user[ "id" ] ), params=dict( key=self.master_api_key ) )
|
||||
update_response = put( update_url, data=json.dumps( dict( username=new_name ) ) )
|
||||
self._assert_status_code_is( update_response, 200 )
|
||||
update_json = update_response.json()
|
||||
self.assertEqual( update_json[ 'username' ], new_name )
|
||||
|
||||
def test_information( self ):
|
||||
user = self._setup_user( TEST_USER_EMAIL )
|
||||
url = self.__url( "information/inputs", user )
|
||||
response = get( url ).json()
|
||||
self.assertEqual( response[ "username" ], user[ "username" ] )
|
||||
self.assertEqual( response[ "email" ], TEST_USER_EMAIL )
|
||||
put( url, data=json.dumps( dict( username="newname", email="new@email.email" ) ) )
|
||||
response = get( url ).json()
|
||||
self.assertEqual( response[ "username" ], "newname" )
|
||||
self.assertEqual( response[ "email" ], "new@email.email" )
|
||||
put( url, data=json.dumps( dict( username=user[ "username" ], email=TEST_USER_EMAIL ) ) )
|
||||
response = get( url ).json()
|
||||
self.assertEqual( response[ "username" ], user[ "username" ] )
|
||||
self.assertEqual( response[ "email" ], TEST_USER_EMAIL )
|
||||
put( url, data=json.dumps( { "address_0|desc" : "_desc" } ) )
|
||||
response = get( url ).json()
|
||||
self.assertEqual( len( response[ "addresses" ] ), 1 )
|
||||
self.assertEqual( response[ "addresses" ][ 0 ][ "desc" ], "_desc" )
|
||||
|
||||
def test_communication( self ):
|
||||
user = self._setup_user( TEST_USER_EMAIL )
|
||||
url = self.__url( "communication/inputs", user )
|
||||
self.assertEqual( self.__filter( get( url ).json(), "enable", "value" ), "false" )
|
||||
put( url, data=json.dumps( dict( enable="true" ) ) )
|
||||
self.assertEqual( self.__filter( get( url ).json(), "enable", "value" ), "true" )
|
||||
|
||||
def __filter( self, response, name, attr ):
|
||||
return [ r[ attr ] for r in response[ "inputs" ] if r[ "name" ] == name ][ 0 ]
|
||||
|
||||
def __url( self, action, user ):
|
||||
return self._api_url( "users/%s/%s" % ( user[ "id" ], action ), params=dict( key=self.master_api_key ) )
|
||||
|
||||
def __show( self, user ):
|
||||
return self._get( "users/%s" % ( user[ 'id' ] ) )
|
||||
|
||||
|
||||
Reference in New Issue
Block a user