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Bugfix: Missing paste import in data.py, log being used before definition.
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@@ -1,14 +1,21 @@
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import logging, os, sys, time, tempfile
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from galaxy import util
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from galaxy.util.odict import odict
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from galaxy.util.bunch import Bunch
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from galaxy.util import inflector
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from galaxy.util.sanitize_html import sanitize_html
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from cgi import escape
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import mimetypes
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import logging
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import metadata
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import mimetypes
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import os
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import sys
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import tempfile
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import zipfile
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from metadata import MetadataElement #import directly to maintain ease of use in Datatype class definitions
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from cgi import escape
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from galaxy import util
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from galaxy.datatypes.metadata import MetadataElement #import directly to maintain ease of use in Datatype class definitions
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from galaxy.util import inflector
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from galaxy.util.bunch import Bunch
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from galaxy.util.odict import odict
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from galaxy.util.sanitize_html import sanitize_html
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from galaxy import eggs
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eggs.require( "Paste" )
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import paste
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if sys.version_info[:2] < ( 2, 6 ):
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@@ -16,6 +23,8 @@ if sys.version_info[:2] < ( 2, 6 ):
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if sys.version_info[:2] < ( 2, 5 ):
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zipfile.LargeZipFile = zipfile.error
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log = logging.getLogger(__name__)
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tmpd = tempfile.mkdtemp()
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comptypes=[]
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ziptype = '32'
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@@ -36,7 +45,6 @@ except OSError:
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pass
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os.rmdir( tmpd )
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log = logging.getLogger(__name__)
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# Valid first column and strand column values vor bed, other formats
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col1_startswith = ['chr', 'chl', 'groupun', 'reftig_', 'scaffold', 'super_', 'vcho']
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