Bugfix: Missing paste import in data.py, log being used before definition.

This commit is contained in:
Dannon Baker
2013-03-01 08:07:56 -05:00
parent 5be04ef7b9
commit ad5e8296b1
+18 -10
View File
@@ -1,14 +1,21 @@
import logging, os, sys, time, tempfile
from galaxy import util
from galaxy.util.odict import odict
from galaxy.util.bunch import Bunch
from galaxy.util import inflector
from galaxy.util.sanitize_html import sanitize_html
from cgi import escape
import mimetypes
import logging
import metadata
import mimetypes
import os
import sys
import tempfile
import zipfile
from metadata import MetadataElement #import directly to maintain ease of use in Datatype class definitions
from cgi import escape
from galaxy import util
from galaxy.datatypes.metadata import MetadataElement #import directly to maintain ease of use in Datatype class definitions
from galaxy.util import inflector
from galaxy.util.bunch import Bunch
from galaxy.util.odict import odict
from galaxy.util.sanitize_html import sanitize_html
from galaxy import eggs
eggs.require( "Paste" )
import paste
if sys.version_info[:2] < ( 2, 6 ):
@@ -16,6 +23,8 @@ if sys.version_info[:2] < ( 2, 6 ):
if sys.version_info[:2] < ( 2, 5 ):
zipfile.LargeZipFile = zipfile.error
log = logging.getLogger(__name__)
tmpd = tempfile.mkdtemp()
comptypes=[]
ziptype = '32'
@@ -36,7 +45,6 @@ except OSError:
pass
os.rmdir( tmpd )
log = logging.getLogger(__name__)
# Valid first column and strand column values vor bed, other formats
col1_startswith = ['chr', 'chl', 'groupun', 'reftig_', 'scaffold', 'super_', 'vcho']