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Rebuild config samples and docs

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with `make config-rebuild`
This commit is contained in:
Nicola Soranzo
2026-01-18 18:51:57 +00:00
parent 0e90fac766
commit ace6cdbbc1
3 changed files with 54 additions and 15 deletions
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doc/source/admin/galaxy_options.rst
+4 -4
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@@ -3816,9 +3816,9 @@
:Type: bool
~~~~~~~~~~~~~~~~~~~~~~~
~~~~~~~~~~~~~~~~~~~~~
``prefer_oidc_login``
~~~~~~~~~~~~~~~~~~~~~~~
~~~~~~~~~~~~~~~~~~~~~
:Description:
Controls the order of the login page to prefer OIDC-based login
@@ -3834,7 +3834,7 @@
:Description:
Allow unregistered users to create new local (non-OIDC) accounts
(otherwise, they will have to be created by an admin). This option
will be overridden to false in case disable_local_accounts is set
will be overridden to false in case disable_local_accounts is set
to true.
:Default: ``true``
:Type: bool
@@ -3846,7 +3846,7 @@
:Description:
Disable local accounts. If this option is set to true, at least
one OIDC provider needs to be configured and will serve as the
one OIDC provider needs to be configured and will serve as the
account provider. If this option is set to true,
allow_local_account creation will be overridden with false.
:Default: ``false``
lib/galaxy/config/sample/galaxy.yml.sample
+44 -11
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@@ -47,6 +47,11 @@ gravity:
# is ``supervisor``.
# memory_limit:
# Memory usage throttle limit (in GB), processes exceeding the limit are throttled and put under heavy reclaim pressure.
# If set, this is the default value for all services. Setting ``memory_high`` on an individual service overrides this
# value. Ignored if ``process_manager`` is ``supervisor``.
# memory_high:
# Specify Galaxy config file (galaxy.yml), if the Gravity config is separate from the Galaxy config. Assumed to be the
# same file as the Gravity config if a ``galaxy`` key exists at the root level, otherwise, this option is required.
# galaxy_config_file:
@@ -67,6 +72,11 @@ gravity:
# If not specified defaults to ``<galaxy_data_dir>/gravity/log``.
# log_dir:
# Run Galaxy processes in the specified journal namespace (sets the value of ``LogNamespace=`` in the systemd service
# units). This allows you to keep Galaxy log messages separate in the system journal from other log messages. Ignored if
# ``process_manager`` is not ``systemd``. See ``systemd.exec(5)`` for details.
# log_namespace:
# Set to Galaxy's virtualenv directory.
# If not specified, Gravity assumes all processes are on PATH. This option is required in most circumstances when using
# the ``systemd`` process manager.
@@ -74,9 +84,7 @@ gravity:
# Select the application server.
# ``gunicorn`` is the default application server.
# ``unicornherder`` is a production-oriented manager for (G)unicorn servers that automates zero-downtime Galaxy server restarts,
# similar to uWSGI Zerg Mode used in the past.
# Valid options are: gunicorn, unicornherder
# Valid options are: gunicorn
# app_server: gunicorn
# Override the default instance name.
@@ -107,8 +115,8 @@ gravity:
# extra_args:
# Use Gunicorn's --preload option to fork workers after loading the Galaxy Application.
# Consumes less memory when multiple processes are configured. Default is ``false`` if using unicornherder, else ``true``.
# preload:
# Consumes less memory when multiple processes are configured.
# preload: true
# umask under which service should be executed
# umask:
@@ -127,6 +135,11 @@ gravity:
# ``supervisor``.
# memory_limit:
# Memory usage throttle limit (in GB). If the service exceeds the limit, processes are throttled and put under heavy
# reclaim pressure. Default is no limit or the value of the ``memory_high`` setting at the top level of the Gravity
# configuration, if set. Ignored if ``process_manager`` is ``supervisor``.
# memory_high:
# Extra environment variables and their values to set when running the service. A dictionary where keys are the variable
# names.
# environment: {}
@@ -171,6 +184,11 @@ gravity:
# ``supervisor``.
# memory_limit:
# Memory usage throttle limit (in GB). If the service exceeds the limit, processes are throttled and put under heavy
# reclaim pressure. Default is no limit or the value of the ``memory_high`` setting at the top level of the Gravity
# configuration, if set. Ignored if ``process_manager`` is ``supervisor``.
# memory_high:
# Extra environment variables and their values to set when running the service. A dictionary where keys are the variable
# names.
# environment: {}
@@ -224,6 +242,11 @@ gravity:
# ``supervisor``.
# memory_limit:
# Memory usage throttle limit (in GB). If the service exceeds the limit, processes are throttled and put under heavy
# reclaim pressure. Default is no limit or the value of the ``memory_high`` setting at the top level of the Gravity
# configuration, if set. Ignored if ``process_manager`` is ``supervisor``.
# memory_high:
# Extra environment variables and their values to set when running the service. A dictionary where keys are the variable
# names.
# environment: {}
@@ -286,6 +309,11 @@ gravity:
# ``supervisor``.
# memory_limit:
# Memory usage throttle limit (in GB). If the service exceeds the limit, processes are throttled and put under heavy
# reclaim pressure. Default is no limit or the value of the ``memory_high`` setting at the top level of the Gravity
# configuration, if set. Ignored if ``process_manager`` is ``supervisor``.
# memory_high:
# Extra environment variables and their values to set when running the service. A dictionary where keys are the variable
# names.
# environment: {}
@@ -338,6 +366,11 @@ gravity:
# ``supervisor``.
# memory_limit:
# Memory usage throttle limit (in GB). If the service exceeds the limit, processes are throttled and put under heavy
# reclaim pressure. Default is no limit or the value of the ``memory_high`` setting at the top level of the Gravity
# configuration, if set. Ignored if ``process_manager`` is ``supervisor``.
# memory_high:
# Extra environment variables and their values to set when running the service. A dictionary where keys are the variable
# names.
# environment: {}
@@ -2111,19 +2144,19 @@ galaxy:
# page (even if require_login is true).
#show_welcome_with_login: false
# Controls the order of the login page to prefer OIDC-based login
# and registration.
# Controls the order of the login page to prefer OIDC-based login and
# registration.
#prefer_oidc_login: false
# Allow unregistered users to create new local (non-OIDC) accounts
# (otherwise, they will have to be created by an admin). This option
# will be overridden to false in case disable_local_accounts is set
# to true.
# will be overridden to false in case disable_local_accounts is set to
# true.
#allow_local_account_creation: true
# Disable local accounts. If this option is set to true, at least one
# OIDC provider needs to be configured and will serve as the account
# provider. If this option is set to true, allow_local_account
# OIDC provider needs to be configured and will serve as the account
# provider. If this option is set to true, allow_local_account
# creation will be overridden with false.
#disable_local_accounts: false
lib/galaxy/config/sample/tool_shed.yml.sample
+6
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@@ -23,6 +23,12 @@ tool_shed:
# without authentication.
#config_hg_for_dev: null
# The base URL of the Tool Shed server used for generating clone URLs
# and repository hostnames. If set, this value will be used instead of
# deriving the URL from the incoming request.
# Example: https://toolshed.g2.bx.psu.edu
#tool_shed_url: null
# Where Tool Shed repositories are stored.
#file_path: database/community_files