mirror of
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Add 16.10 release notes.
This commit is contained in:
John Chilton
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.. to_doc
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16.10
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===============================
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.. announce_start
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Enhancements
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-------------------------------
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.. major_feature
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* Introduce Galaxy Webhooks - plugins for the web UI
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(including work from `@bgruening <https://github.com/bgruening>`__,
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and `@anatskiy <https://github.com/anatskiy>`__).
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`Pull Request 3040`_, `Pull Request 3102`_
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* The workflow run form has been replaced by one backed by the new tool form and the API.
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`Pull Request 2669`_, `Pull Request 2720`_, `Pull Request 2766`_,
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`Pull Request 2776`_, `Pull Request 2770`_, `Pull Request 2895`_,
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`Pull Request 2935`_, `Pull Request 3007`_, `Pull Request 2969`_,
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`Pull Request 2799`_, `Pull Request 3082`_, `Pull Request 2672`_,
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`Pull Request 2920`_, `Pull Request 2777`_, `Pull Request 2902`_
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* Overhaul of charts visualization - more visualizations, more options, and better user interface.
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`Pull Request 2875`_, `Pull Request 2820`_
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* Paginate contents of large histories.
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`Pull Request 2588`_
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* Reload tools automatically without restarting Galaxy during tool shed installs
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(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
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`Pull Request 2840`_, `Pull Request 3025`_
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* Implement a collection operation tool for merging collections
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(thanks to `@Takadonet <https://github.com/Takadonet>`__).
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`Pull Request 2771`_
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* Add a password strength evaluation bar
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(thanks to `@benfulton <https://github.com/benfulton>`__).
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`Pull Request 2687`_
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* Implement a GoDocker job runner
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(thanks to `@varunshankar <https://github.com/varunshankar>`__).
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`Pull Request 2791`_, `Pull Request 2653`_
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* Support for API batch requests.
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`Pull Request 1768`_
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* Allow JSONP to be returned from API endpoints.
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`Pull Request 2937`_
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* Add "Save as" as an option in the workflow editor
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(thanks to `@tmcgowan <https://github.com/tmcgowan>`__).
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`Pull Request 3035`_
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* Replace `reference documentation <https://docs.galaxyproject.org/en/latest/dev/schema.html>`__
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for tool XML files with automatically generated
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documentation from a now official Galaxy XSD documentation (with help from many).
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`Pull Request 2923`_, `Pull Request 2936`_, `Pull Request 3086`_,
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`Pull Request 2932`_, `Pull Request 2903`_, `Pull Request 3020`_,
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`Pull Request 3072`_
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* Allow naming input datasets and collections during workflow extraction.
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`Pull Request 2943`_
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* Various enhancements for API driven installation of tool shed repositories.
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`Pull Request 2769`_
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* Implement beta support for discovering biocontainer Docker containers automatically for tool dependencies.
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`Pull Request 2986`_
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* Improved API support for downloading datasets and relevant files.
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`Pull Request 2741`_, `Pull Request 2885`_
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* Make tool search field stay at top of window when tool list scrolls.
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(thanks to `@sszakony <https://github.com/sszakony>`__).
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`Pull Request 2730`_, `Issue 2375`_
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* Scratchbook enhancement to include info and view details links for datasets.
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`Pull Request 2733`_
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* Add implicit conversions target extension to HDA name when listed as
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selection option in the tool form.
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`Pull Request 2734`_
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* Add column names to BED datatype so that column names are displayed in
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the dataset viewer.
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`Pull Request 2784`_
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* Add "All" and "None" buttons to copy dataset view.
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`Pull Request 2957`_
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* Lazy load workflow invocation steps to vastly improve scheduling performance of large
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collection workflows
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(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
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`Pull Request 2978`_
|
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* Allow '.' and '_' for public names
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(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
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`Pull Request 2947`_
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* Add CEL datatype
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(thanks to `@nturaga <https://github.com/nturaga>`__).
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`Pull Request 3073`_
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* Add a netcdf datatype for metabolomics spectre data
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(thanks to `@lecorguille <https://github.com/lecorguille>`__).
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`Pull Request 2706`_
|
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* Returning Blast datatypes to Galaxy core
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(thanks to `@peterjc <https://github.com/peterjc>`__).
|
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`Pull Request 2696`_
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* Add HDT format (with turtle format sniffer improvements)
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(thanks to `@jjkoehorst <https://github.com/jjkoehorst>`__).
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`Pull Request 2787`_
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* Allow more configurability for containerized jobs.
|
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`Pull Request 2790`_
|
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* Functionality to allow admins to switch on/off the line endings conversion
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on library dataset import
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(thanks to `@SANBI-SA <https://github.com/SANBI-SA>`__).
|
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`Pull Request 2819`_
|
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* Fix dataset selector update when deleting history items.
|
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`Pull Request 2677`_
|
||||
* Add a tutorial on building job runners to the documentation
|
||||
(thanks to `@varunshankar <https://github.com/varunshankar>`__).
|
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`Pull Request 2700`_
|
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* Allow viewing tool help from history datasets
|
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(thanks to `@tmcgowan <https://github.com/tmcgowan>`__).
|
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`Pull Request 3051`_
|
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* Prevent TS from creating sessions for repository status checks.
|
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`Pull Request 2732`_
|
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* Shorten Conda environment names
|
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(thanks to `@bgruening <https://github.com/bgruening>`__).
|
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`Pull Request 2794`_
|
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* Various release process improvements (including an enhancement from
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`@nsoranzo <https://github.com/nsoranzo>`__).
|
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`Pull Request 2857`_, `Pull Request 2858`_, `Pull Request 2689`_,
|
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`Pull Request 2865`_, `Pull Request 2952`_, `Pull Request 2695`_,
|
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`Pull Request 2991`_, `Pull Request 3232`_
|
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* Various datatypes fixes and enhancements
|
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(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
|
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`Pull Request 2690`_
|
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* Various fixes and improvements for galaxy.json.
|
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`Pull Request 2697`_
|
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* Improve samtools usage with ``--version-only`` check
|
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(thanks to `@remimarenco <https://github.com/remimarenco>`__).
|
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`Pull Request 2705`_
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* All-around improvements to toolbox loading/reloading
|
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(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
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`Pull Request 2901`_
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* Refactor shed tool lineage registration
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(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
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`Pull Request 2909`_
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* Log the resolved dependency type
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(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
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`Pull Request 2917`_, `Pull Request 3036`_
|
||||
* Fixes for Python 3 and new import linting for dozens of packages
|
||||
(largely thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
|
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`Pull Request 2731`_, `Pull Request 3177`_, `Pull Request 2983`_,
|
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`Pull Request 2889`_, `Pull Request 3031`_, `Pull Request 3170`_,
|
||||
`Pull Request 3154`_
|
||||
* Change every occurrence in the code of ``__all__`` from list to a tuple
|
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(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
|
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`Pull Request 3041`_, `Pull Request 3071`_
|
||||
* Docstring linting and fixes.
|
||||
`Pull Request 3003`_, `Pull Request 3004`_
|
||||
* Update python-ldap module
|
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(thanks to `@abretaud <https://github.com/abretaud>`__).
|
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`Pull Request 2738`_
|
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* Update sqlalchemy to 1.0.15 (from 1.0.8).
|
||||
`Pull Request 2979`_
|
||||
* Slightly revise auto configuration of loggers.
|
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`Pull Request 2735`_
|
||||
* Various ``Makefile`` improvements and fixes.
|
||||
`Pull Request 2757`_, `Pull Request 2688`_, `Pull Request 3167`_
|
||||
* Improve startup scripts
|
||||
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
|
||||
`Pull Request 2765`_
|
||||
* Remove ``enable_beta_tool_command_isolation`` config option
|
||||
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
|
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`Pull Request 2830`_
|
||||
* Regularize comments configuration samples.
|
||||
`Pull Request 2824`_, `Pull Request 2841`_, `Pull Request 2814`_
|
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* Skip whoami check for LDAP servers not supporting it
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||||
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
|
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`Pull Request 2832`_
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* Filter disposable mail blacklist on the first domain level only.
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`Pull Request 2839`_
|
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* Fix link target in admin view of tool lineages.
|
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`Pull Request 2862`_
|
||||
* Refactor duplicated back-end code to create a new ``trans`` method for
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getting the most recently touched history.
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`Pull Request 2870`_
|
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* Document setting column names in Galaxy tool XSD.
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`Pull Request 2965`_
|
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* Functional test case for testing column names as meta-data
|
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(thanks to `@yhoogstrate <https://github.com/yhoogstrate>`__).
|
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`Pull Request 2970`_
|
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* Improve ``version_command`` tag.
|
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`Pull Request 2961`_
|
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* Add ``rgb`` option for color picker tool parameter.
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`Pull Request 3006`_
|
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* Improved docs and testing for color parameters.
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`Pull Request 3016`_
|
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* Add documentation on optional ``multiple="true"`` data parameters.
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`Pull Request 3024`_
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* Fix tool XSD to accept a help attribute for ``section``s
|
||||
(thanks to `@joachimwolff <https://github.com/joachimwolff>`__).
|
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`Pull Request 3131`_
|
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* In Trackster, read numerical data directly from bigWig files.
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`Pull Request 2880`_
|
||||
* Improve wording of tool installation forms
|
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(thanks to `@nturaga <https://github.com/nturaga>`__).
|
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`Pull Request 2893`_
|
||||
* Add `database/dependencies` to `.gitignore`
|
||||
(thanks to `@nturaga <https://github.com/nturaga>`__).
|
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`Pull Request 2904`_
|
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* Allow admin to serialize/deserialize dataset permissions via the API.
|
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`Pull Request 2912`_
|
||||
* Allow API access to genome fasta index and sequence
|
||||
(thanks to `@jj-umn <https://github.com/jj-umn>`__).
|
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`Pull Request 2939`_
|
||||
* Extend ``PUT /api/workflows/{id}`` with additional workflow properties
|
||||
(thanks to `@tmcgowan <https://github.com/tmcgowan>`__).
|
||||
`Pull Request 3080`_
|
||||
* Update the copyright year in the LICENSE.txt.
|
||||
`Pull Request 2926`_
|
||||
* Remove unnecessary use of binascii
|
||||
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
|
||||
`Pull Request 2946`_
|
||||
* Change wording to be more clear about how workflow output cleanup works.
|
||||
`Pull Request 2966`_
|
||||
* Optimized workflow invocation step update.
|
||||
`Pull Request 2973`_
|
||||
* Update issues.rst to bring inline with actual usage on Github.
|
||||
`Pull Request 2976`_
|
||||
* Improve Conda FAQ documentation.
|
||||
`Pull Request 2998`_, `Pull Request 2891`_, `Pull Request 2871`_
|
||||
* Add documentation for ``conda_copy_dependencies`` option
|
||||
(thanks to `@abretaud <https://github.com/abretaud>`__).
|
||||
`Pull Request 3105`_
|
||||
* Slight clarification of run.sh messaging when using Conda.
|
||||
`Pull Request 3188`_
|
||||
* Display tool requirements for conda-only tools
|
||||
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
||||
`Pull Request 3262`_
|
||||
* Pass dependency shell command errors to log
|
||||
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
||||
`Pull Request 3129`_
|
||||
* Fix for bioconda recipes depending on conda-forge.
|
||||
`Pull Request 3023`_
|
||||
* Increase min number of columns for pileup sniffing to 5
|
||||
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
|
||||
`Pull Request 3033`_
|
||||
* Remove outdated warning on ID_SECRET
|
||||
(thanks to `@erasche <https://github.com/erasche>`__).
|
||||
`Pull Request 3046`_
|
||||
* Always display text
|
||||
`Pull Request 3052`_
|
||||
* Add Galaxy architecture slides documentation to project.
|
||||
`Pull Request 3060`_, `Pull Request 3091`_
|
||||
* Add tool XML reload to tool run page - for admins only
|
||||
(thanks to `@tmcgowan <https://github.com/tmcgowan>`__).
|
||||
`Pull Request 3070`_, `Issue 943 <https://github.com/galaxyproject/galaxy/issues/943>`__
|
||||
* Move thumbnail list view to shared UI elements, revise tabs, add test cases
|
||||
`Pull Request 3079`_
|
||||
* Include filenames in .loc file DEBUG lines
|
||||
(thanks to `@peterjc <https://github.com/peterjc>`__).
|
||||
`Pull Request 3095`_
|
||||
* Log loading of resources from .loc files
|
||||
(thanks to `@peterjc <https://github.com/peterjc>`__).
|
||||
`Pull Request 3099`_
|
||||
* Eager load tags and annotations in history display.
|
||||
`Pull Request 3110`_
|
||||
* Display an error message when toolbox filtering fails.
|
||||
`Pull Request 3123`_
|
||||
* Bring in various updates from galaxy-lib.
|
||||
`Pull Request 3169`_, `Pull Request 2888`_
|
||||
* Add links to local tours to sample welcome.
|
||||
`Pull Request 3176`_
|
||||
* Fix history deletion bug when using impersonation.
|
||||
`Pull Request 2654`_
|
||||
* Refactor upload dialog to use local CSS classes and avoid model listeners.
|
||||
`Pull Request 2711`_
|
||||
* Rework tool shed middleware
|
||||
`Pull Request 2782`_, `Pull Request 2753`_
|
||||
* Refactor - move filelock.py to galaxy.util.
|
||||
`Pull Request 2879`_
|
||||
* Use requests in driver_util for better proxy handling
|
||||
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
||||
`Pull Request 3013`_
|
||||
* Fix workflow extraction API tests on PostgreSQL
|
||||
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
|
||||
`Pull Request 3039`_
|
||||
* Avoid pointless lambda function
|
||||
(thanks to `@peterjc <https://github.com/peterjc>`__).
|
||||
`Pull Request 3097`_
|
||||
* Remove unnecessary ``set_output_history`` parameter
|
||||
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
|
||||
`Pull Request 3155`_
|
||||
* Various code fixes for object store and docs
|
||||
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
|
||||
`Pull Request 3119`_
|
||||
* Fix BLAST database *.loc files inconsistency
|
||||
(thanks to `@peterjc <https://github.com/peterjc>`__).
|
||||
`Pull Request 3098`_
|
||||
* Add ``download_to_file`` function to ``galaxy.util``
|
||||
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
|
||||
`Pull Request 3100`_
|
||||
* Log invalid XML filename
|
||||
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
||||
`Pull Request 3124`_
|
||||
* Quote all paths in converter tool XML files
|
||||
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
||||
`Pull Request 3165`_
|
||||
|
||||
Fixes
|
||||
-------------------------------
|
||||
|
||||
* Use default job history on ``build_for_rerun`` if current history is unavailable.
|
||||
`Pull Request 2668`_
|
||||
* Fixing button width on composite upload dialog
|
||||
(thanks to `@sszakony <https://github.com/sszakony>`__).
|
||||
`Pull Request 2703`_, `Issue 2591 <https://github.com/galaxyproject/galaxy/issues/2591>`__
|
||||
* Fix for splitting dataset collections
|
||||
(thanks to `@gregvonkuster <https://github.com/gregvonkuster>`__).
|
||||
`Pull Request 2708`_
|
||||
* Fix tours pasting content into text area.
|
||||
`Pull Request 2715`_
|
||||
* Slight styling tweak to prevent overflow on the right edge in composite upload dialog.
|
||||
`Pull Request 2716`_
|
||||
* Workflow toolbox style updates.
|
||||
`Pull Request 2740`_
|
||||
* Fix docker command_list
|
||||
(thanks to `@manabuishii <https://github.com/manabuishii>`__).
|
||||
`Pull Request 2748`_
|
||||
* Fix ``list:list`` history display in the GUI.
|
||||
`Pull Request 2758`_
|
||||
* Parse internal parameters such as job resource selections when data
|
||||
converter tools are executed implicitly.
|
||||
`Pull Request 2761`_
|
||||
* Fix broken check when creating Docker volumes default for jobs
|
||||
(thanks to `@manabuishii <https://github.com/manabuishii>`__).
|
||||
`Pull Request 2763`_
|
||||
* Fix to prevent login form from appearing in scratchbook window
|
||||
(thanks to `@sszakony <https://github.com/sszakony>`__).
|
||||
`Pull Request 2808`_
|
||||
* Allow NodeJS proxy to do reverse proxying
|
||||
(thanks to `@erasche <https://github.com/erasche>`__).
|
||||
`Pull Request 2817`_
|
||||
* Fixes for the RStudio interactive environment
|
||||
(thanks to `@erasche <https://github.com/erasche>`__).
|
||||
`Pull Request 2818`_
|
||||
* Acquire lock before attempting to install conda
|
||||
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
||||
`Pull Request 2826`_
|
||||
* Fix Galaxy for if pyuwsgi is install in Galaxy's virtual environment.
|
||||
`Pull Request 2836`_
|
||||
* Fix tabular renderer display when ``total_cols > line_cols > 1``.
|
||||
`Pull Request 2845`_
|
||||
* Remove empty file in toolbox module.
|
||||
`Pull Request 2877`_
|
||||
* Fix for workflow execution when using collections.
|
||||
`Pull Request 2898`_, `Issue 2806 <https://github.com/galaxyproject/galaxy/issues/2806>`__
|
||||
* Implement ``split`` on a validator.
|
||||
`Pull Request 2921`_
|
||||
* Catch failure to import grp in util (for Pulsar on Windows)
|
||||
`Pull Request 2928`_
|
||||
* Bump pysam, remove ``already_compressed`` usage due to new wheel.
|
||||
`Pull Request 2953`_
|
||||
* Re-build DOM on render for modal in the front-end.
|
||||
`Pull Request 2955`_
|
||||
* Fix optional column form values when editing dataset properties.
|
||||
`Pull Request 2960`_
|
||||
* Fix optional flag for library datasets in legacy library UI.
|
||||
`Pull Request 2962`_
|
||||
* Reload metadata and lib tools on toolbox reload
|
||||
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
||||
`Pull Request 2992`_
|
||||
* Update some old information in API guideline docs.
|
||||
`Pull Request 3011`_
|
||||
* Fix for rerunning tool with workflow resume that is part of a collection.
|
||||
`Pull Request 3019`_
|
||||
* Missing double quotation in tool XSD example
|
||||
(thanks to `@ramezrawas <https://github.com/ramezrawas>`__).
|
||||
`Pull Request 3027`_
|
||||
* Include base classes when searching datatypes by name.
|
||||
`Pull Request 3028`_
|
||||
* Image detection fixes.
|
||||
`Pull Request 3042`_
|
||||
* Fix tabular filtering tool broken in `#2983
|
||||
<https://github.com/galaxyproject/galaxy/issues/2983>`__
|
||||
`Pull Request 3043`_
|
||||
* Fix GFF attribute filtering tool broken in `#2983
|
||||
<https://github.com/galaxyproject/galaxy/issues/2983>`__
|
||||
`Pull Request 3044`_
|
||||
* Fix for displaying parameters to the user that have a ``False`` value.
|
||||
`Pull Request 3045`_
|
||||
* Fix downloading tool tarball with boolean test input values.
|
||||
`Pull Request 3047`_
|
||||
* Sort bedtools output in ``bam_to_bigwig`` conversion
|
||||
(thanks to `@lparsons <https://github.com/lparsons>`__).
|
||||
`Pull Request 3049`_
|
||||
* Remove incorrect communication server check.
|
||||
`Pull Request 3053`_
|
||||
* Fix import orders for updates to flake8_import_order.
|
||||
`Pull Request 3059`_
|
||||
* Dataset metadata should not be cached when building chart visualizations.
|
||||
`Pull Request 3062`_
|
||||
* Fix libraries prefix.
|
||||
`Pull Request 3074`_
|
||||
* Fix qunit local testing install -- now runs on modern node (v6.9.1).
|
||||
`Pull Request 3089`_
|
||||
* Add routes to get genomes indexes and sequences
|
||||
(thanks to `@jj-umn <https://github.com/jj-umn>`__).
|
||||
`Pull Request 3109`_
|
||||
* Escape section name when writing to XML
|
||||
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
||||
`Pull Request 3122`_
|
||||
* Fix tools placed outside of panel section
|
||||
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
||||
`Pull Request 3125`_
|
||||
* Fix XSD for ``exclude_min`` and ``exclude_max``
|
||||
(thanks to `@gregvonkuster <https://github.com/gregvonkuster>`__).
|
||||
`Pull Request 3108`_
|
||||
* Update galaxy.xsd
|
||||
(thanks to `@lecorguille <https://github.com/lecorguille>`__).
|
||||
`Pull Request 3132`_
|
||||
* Fix to treat the value of ``message_box_visible`` in ``galaxy.ini`` as a boolean.
|
||||
`Pull Request 3139`_
|
||||
* Ensure a From: address is set for user activation emails.
|
||||
`Pull Request 3140`_
|
||||
* Explicitly specify attributes which should be copied to converted datasets.
|
||||
`Pull Request 3149`_
|
||||
* Prefer existing .venv over conda, when both are available.
|
||||
`Pull Request 3180`_
|
||||
* Validate cycles and step size before building model for workflow execution.
|
||||
`Pull Request 3183`_
|
||||
* Fix a typo in the intro tour.
|
||||
`Pull Request 3184`_
|
||||
* Make SAM to bam converter tool compatible with samtools >= 1.3
|
||||
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
||||
`Pull Request 3187`_
|
||||
* Remove unused (and unintended) config override.
|
||||
`Pull Request 3198`_
|
||||
* Fixes for deleting histories.
|
||||
`Pull Request 3203`_
|
||||
* Change 'History Actions' to 'Current History' in history options menu.
|
||||
`Pull Request 3205`_
|
||||
* Preserve custom event handler for form inputs.
|
||||
`Pull Request 3210`_
|
||||
* Admin installation UX wording fixes.
|
||||
`Pull Request 3226`_
|
||||
* Backport `#3106 <https://github.com/galaxyproject/galaxy/issues/3106>`__ and
|
||||
`#3222 <https://github.com/galaxyproject/galaxy/issues/3222>`__: Cached
|
||||
conda environments and API to manage them
|
||||
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
|
||||
`Pull Request 3227`_
|
||||
|
||||
.. _Issue 2375: https://github.com/galaxyproject/galaxy/issues/2375
|
||||
.. github_links
|
||||
.. _Pull Request 1768: https://github.com/galaxyproject/galaxy/pull/1768
|
||||
.. _Pull Request 2588: https://github.com/galaxyproject/galaxy/pull/2588
|
||||
.. _Pull Request 2653: https://github.com/galaxyproject/galaxy/pull/2653
|
||||
.. _Pull Request 2654: https://github.com/galaxyproject/galaxy/pull/2654
|
||||
.. _Pull Request 2668: https://github.com/galaxyproject/galaxy/pull/2668
|
||||
.. _Pull Request 2669: https://github.com/galaxyproject/galaxy/pull/2669
|
||||
.. _Pull Request 2672: https://github.com/galaxyproject/galaxy/pull/2672
|
||||
.. _Pull Request 2674: https://github.com/galaxyproject/galaxy/pull/2674
|
||||
.. _Pull Request 2677: https://github.com/galaxyproject/galaxy/pull/2677
|
||||
.. _Pull Request 2686: https://github.com/galaxyproject/galaxy/pull/2686
|
||||
.. _Pull Request 2687: https://github.com/galaxyproject/galaxy/pull/2687
|
||||
.. _Pull Request 2688: https://github.com/galaxyproject/galaxy/pull/2688
|
||||
.. _Pull Request 2689: https://github.com/galaxyproject/galaxy/pull/2689
|
||||
.. _Pull Request 2690: https://github.com/galaxyproject/galaxy/pull/2690
|
||||
.. _Pull Request 2695: https://github.com/galaxyproject/galaxy/pull/2695
|
||||
.. _Pull Request 2696: https://github.com/galaxyproject/galaxy/pull/2696
|
||||
.. _Pull Request 2697: https://github.com/galaxyproject/galaxy/pull/2697
|
||||
.. _Pull Request 2700: https://github.com/galaxyproject/galaxy/pull/2700
|
||||
.. _Pull Request 2703: https://github.com/galaxyproject/galaxy/pull/2703
|
||||
.. _Pull Request 2705: https://github.com/galaxyproject/galaxy/pull/2705
|
||||
.. _Pull Request 2706: https://github.com/galaxyproject/galaxy/pull/2706
|
||||
.. _Pull Request 2708: https://github.com/galaxyproject/galaxy/pull/2708
|
||||
.. _Pull Request 2711: https://github.com/galaxyproject/galaxy/pull/2711
|
||||
.. _Pull Request 2715: https://github.com/galaxyproject/galaxy/pull/2715
|
||||
.. _Pull Request 2716: https://github.com/galaxyproject/galaxy/pull/2716
|
||||
.. _Pull Request 2720: https://github.com/galaxyproject/galaxy/pull/2720
|
||||
.. _Pull Request 2730: https://github.com/galaxyproject/galaxy/pull/2730
|
||||
.. _Pull Request 2731: https://github.com/galaxyproject/galaxy/pull/2731
|
||||
.. _Pull Request 2732: https://github.com/galaxyproject/galaxy/pull/2732
|
||||
.. _Pull Request 2733: https://github.com/galaxyproject/galaxy/pull/2733
|
||||
.. _Pull Request 2734: https://github.com/galaxyproject/galaxy/pull/2734
|
||||
.. _Pull Request 2735: https://github.com/galaxyproject/galaxy/pull/2735
|
||||
.. _Pull Request 2738: https://github.com/galaxyproject/galaxy/pull/2738
|
||||
.. _Pull Request 2740: https://github.com/galaxyproject/galaxy/pull/2740
|
||||
.. _Pull Request 2741: https://github.com/galaxyproject/galaxy/pull/2741
|
||||
.. _Pull Request 2748: https://github.com/galaxyproject/galaxy/pull/2748
|
||||
.. _Pull Request 2753: https://github.com/galaxyproject/galaxy/pull/2753
|
||||
.. _Pull Request 2757: https://github.com/galaxyproject/galaxy/pull/2757
|
||||
.. _Pull Request 2758: https://github.com/galaxyproject/galaxy/pull/2758
|
||||
.. _Pull Request 2761: https://github.com/galaxyproject/galaxy/pull/2761
|
||||
.. _Pull Request 2762: https://github.com/galaxyproject/galaxy/pull/2762
|
||||
.. _Pull Request 2763: https://github.com/galaxyproject/galaxy/pull/2763
|
||||
.. _Pull Request 2765: https://github.com/galaxyproject/galaxy/pull/2765
|
||||
.. _Pull Request 2766: https://github.com/galaxyproject/galaxy/pull/2766
|
||||
.. _Pull Request 2769: https://github.com/galaxyproject/galaxy/pull/2769
|
||||
.. _Pull Request 2770: https://github.com/galaxyproject/galaxy/pull/2770
|
||||
.. _Pull Request 2771: https://github.com/galaxyproject/galaxy/pull/2771
|
||||
.. _Pull Request 2776: https://github.com/galaxyproject/galaxy/pull/2776
|
||||
.. _Pull Request 2777: https://github.com/galaxyproject/galaxy/pull/2777
|
||||
.. _Pull Request 2782: https://github.com/galaxyproject/galaxy/pull/2782
|
||||
.. _Pull Request 2784: https://github.com/galaxyproject/galaxy/pull/2784
|
||||
.. _Pull Request 2787: https://github.com/galaxyproject/galaxy/pull/2787
|
||||
.. _Pull Request 2790: https://github.com/galaxyproject/galaxy/pull/2790
|
||||
.. _Pull Request 2791: https://github.com/galaxyproject/galaxy/pull/2791
|
||||
.. _Pull Request 2794: https://github.com/galaxyproject/galaxy/pull/2794
|
||||
.. _Pull Request 2799: https://github.com/galaxyproject/galaxy/pull/2799
|
||||
.. _Pull Request 2808: https://github.com/galaxyproject/galaxy/pull/2808
|
||||
.. _Pull Request 2814: https://github.com/galaxyproject/galaxy/pull/2814
|
||||
.. _Pull Request 2816: https://github.com/galaxyproject/galaxy/pull/2816
|
||||
.. _Pull Request 2817: https://github.com/galaxyproject/galaxy/pull/2817
|
||||
.. _Pull Request 2818: https://github.com/galaxyproject/galaxy/pull/2818
|
||||
.. _Pull Request 2819: https://github.com/galaxyproject/galaxy/pull/2819
|
||||
.. _Pull Request 2820: https://github.com/galaxyproject/galaxy/pull/2820
|
||||
.. _Pull Request 2824: https://github.com/galaxyproject/galaxy/pull/2824
|
||||
.. _Pull Request 2826: https://github.com/galaxyproject/galaxy/pull/2826
|
||||
.. _Pull Request 2830: https://github.com/galaxyproject/galaxy/pull/2830
|
||||
.. _Pull Request 2832: https://github.com/galaxyproject/galaxy/pull/2832
|
||||
.. _Pull Request 2836: https://github.com/galaxyproject/galaxy/pull/2836
|
||||
.. _Pull Request 2839: https://github.com/galaxyproject/galaxy/pull/2839
|
||||
.. _Pull Request 2840: https://github.com/galaxyproject/galaxy/pull/2840
|
||||
.. _Pull Request 2841: https://github.com/galaxyproject/galaxy/pull/2841
|
||||
.. _Pull Request 2845: https://github.com/galaxyproject/galaxy/pull/2845
|
||||
.. _Pull Request 2848: https://github.com/galaxyproject/galaxy/pull/2848
|
||||
.. _Pull Request 2857: https://github.com/galaxyproject/galaxy/pull/2857
|
||||
.. _Pull Request 2858: https://github.com/galaxyproject/galaxy/pull/2858
|
||||
.. _Pull Request 2862: https://github.com/galaxyproject/galaxy/pull/2862
|
||||
.. _Pull Request 2865: https://github.com/galaxyproject/galaxy/pull/2865
|
||||
.. _Pull Request 2870: https://github.com/galaxyproject/galaxy/pull/2870
|
||||
.. _Pull Request 2871: https://github.com/galaxyproject/galaxy/pull/2871
|
||||
.. _Pull Request 2872: https://github.com/galaxyproject/galaxy/pull/2872
|
||||
.. _Pull Request 2875: https://github.com/galaxyproject/galaxy/pull/2875
|
||||
.. _Pull Request 2877: https://github.com/galaxyproject/galaxy/pull/2877
|
||||
.. _Pull Request 2879: https://github.com/galaxyproject/galaxy/pull/2879
|
||||
.. _Pull Request 2880: https://github.com/galaxyproject/galaxy/pull/2880
|
||||
.. _Pull Request 2885: https://github.com/galaxyproject/galaxy/pull/2885
|
||||
.. _Pull Request 2887: https://github.com/galaxyproject/galaxy/pull/2887
|
||||
.. _Pull Request 2888: https://github.com/galaxyproject/galaxy/pull/2888
|
||||
.. _Pull Request 2889: https://github.com/galaxyproject/galaxy/pull/2889
|
||||
.. _Pull Request 2891: https://github.com/galaxyproject/galaxy/pull/2891
|
||||
.. _Pull Request 2893: https://github.com/galaxyproject/galaxy/pull/2893
|
||||
.. _Pull Request 2894: https://github.com/galaxyproject/galaxy/pull/2894
|
||||
.. _Pull Request 2895: https://github.com/galaxyproject/galaxy/pull/2895
|
||||
.. _Pull Request 2898: https://github.com/galaxyproject/galaxy/pull/2898
|
||||
.. _Pull Request 2901: https://github.com/galaxyproject/galaxy/pull/2901
|
||||
.. _Pull Request 2902: https://github.com/galaxyproject/galaxy/pull/2902
|
||||
.. _Pull Request 2903: https://github.com/galaxyproject/galaxy/pull/2903
|
||||
.. _Pull Request 2904: https://github.com/galaxyproject/galaxy/pull/2904
|
||||
.. _Pull Request 2905: https://github.com/galaxyproject/galaxy/pull/2905
|
||||
.. _Pull Request 2909: https://github.com/galaxyproject/galaxy/pull/2909
|
||||
.. _Pull Request 2912: https://github.com/galaxyproject/galaxy/pull/2912
|
||||
.. _Pull Request 2917: https://github.com/galaxyproject/galaxy/pull/2917
|
||||
.. _Pull Request 2920: https://github.com/galaxyproject/galaxy/pull/2920
|
||||
.. _Pull Request 2921: https://github.com/galaxyproject/galaxy/pull/2921
|
||||
.. _Pull Request 2923: https://github.com/galaxyproject/galaxy/pull/2923
|
||||
.. _Pull Request 2926: https://github.com/galaxyproject/galaxy/pull/2926
|
||||
.. _Pull Request 2928: https://github.com/galaxyproject/galaxy/pull/2928
|
||||
.. _Pull Request 2932: https://github.com/galaxyproject/galaxy/pull/2932
|
||||
.. _Pull Request 2935: https://github.com/galaxyproject/galaxy/pull/2935
|
||||
.. _Pull Request 2936: https://github.com/galaxyproject/galaxy/pull/2936
|
||||
.. _Pull Request 2937: https://github.com/galaxyproject/galaxy/pull/2937
|
||||
.. _Pull Request 2939: https://github.com/galaxyproject/galaxy/pull/2939
|
||||
.. _Pull Request 2943: https://github.com/galaxyproject/galaxy/pull/2943
|
||||
.. _Pull Request 2946: https://github.com/galaxyproject/galaxy/pull/2946
|
||||
.. _Pull Request 2947: https://github.com/galaxyproject/galaxy/pull/2947
|
||||
.. _Pull Request 2952: https://github.com/galaxyproject/galaxy/pull/2952
|
||||
.. _Pull Request 2953: https://github.com/galaxyproject/galaxy/pull/2953
|
||||
.. _Pull Request 2955: https://github.com/galaxyproject/galaxy/pull/2955
|
||||
.. _Pull Request 2957: https://github.com/galaxyproject/galaxy/pull/2957
|
||||
.. _Pull Request 2960: https://github.com/galaxyproject/galaxy/pull/2960
|
||||
.. _Pull Request 2961: https://github.com/galaxyproject/galaxy/pull/2961
|
||||
.. _Pull Request 2962: https://github.com/galaxyproject/galaxy/pull/2962
|
||||
.. _Pull Request 2965: https://github.com/galaxyproject/galaxy/pull/2965
|
||||
.. _Pull Request 2966: https://github.com/galaxyproject/galaxy/pull/2966
|
||||
.. _Pull Request 2969: https://github.com/galaxyproject/galaxy/pull/2969
|
||||
.. _Pull Request 2970: https://github.com/galaxyproject/galaxy/pull/2970
|
||||
.. _Pull Request 2971: https://github.com/galaxyproject/galaxy/pull/2971
|
||||
.. _Pull Request 2972: https://github.com/galaxyproject/galaxy/pull/2972
|
||||
.. _Pull Request 2973: https://github.com/galaxyproject/galaxy/pull/2973
|
||||
.. _Pull Request 2974: https://github.com/galaxyproject/galaxy/pull/2974
|
||||
.. _Pull Request 2975: https://github.com/galaxyproject/galaxy/pull/2975
|
||||
.. _Pull Request 2976: https://github.com/galaxyproject/galaxy/pull/2976
|
||||
.. _Pull Request 2978: https://github.com/galaxyproject/galaxy/pull/2978
|
||||
.. _Pull Request 2979: https://github.com/galaxyproject/galaxy/pull/2979
|
||||
.. _Pull Request 2983: https://github.com/galaxyproject/galaxy/pull/2983
|
||||
.. _Pull Request 2986: https://github.com/galaxyproject/galaxy/pull/2986
|
||||
.. _Pull Request 2990: https://github.com/galaxyproject/galaxy/pull/2990
|
||||
.. _Pull Request 2991: https://github.com/galaxyproject/galaxy/pull/2991
|
||||
.. _Pull Request 2992: https://github.com/galaxyproject/galaxy/pull/2992
|
||||
.. _Pull Request 2998: https://github.com/galaxyproject/galaxy/pull/2998
|
||||
.. _Pull Request 3003: https://github.com/galaxyproject/galaxy/pull/3003
|
||||
.. _Pull Request 3004: https://github.com/galaxyproject/galaxy/pull/3004
|
||||
.. _Pull Request 3005: https://github.com/galaxyproject/galaxy/pull/3005
|
||||
.. _Pull Request 3006: https://github.com/galaxyproject/galaxy/pull/3006
|
||||
.. _Pull Request 3007: https://github.com/galaxyproject/galaxy/pull/3007
|
||||
.. _Pull Request 3010: https://github.com/galaxyproject/galaxy/pull/3010
|
||||
.. _Pull Request 3011: https://github.com/galaxyproject/galaxy/pull/3011
|
||||
.. _Pull Request 3013: https://github.com/galaxyproject/galaxy/pull/3013
|
||||
.. _Pull Request 3016: https://github.com/galaxyproject/galaxy/pull/3016
|
||||
.. _Pull Request 3019: https://github.com/galaxyproject/galaxy/pull/3019
|
||||
.. _Pull Request 3020: https://github.com/galaxyproject/galaxy/pull/3020
|
||||
.. _Pull Request 3023: https://github.com/galaxyproject/galaxy/pull/3023
|
||||
.. _Pull Request 3024: https://github.com/galaxyproject/galaxy/pull/3024
|
||||
.. _Pull Request 3025: https://github.com/galaxyproject/galaxy/pull/3025
|
||||
.. _Pull Request 3027: https://github.com/galaxyproject/galaxy/pull/3027
|
||||
.. _Pull Request 3028: https://github.com/galaxyproject/galaxy/pull/3028
|
||||
.. _Pull Request 3031: https://github.com/galaxyproject/galaxy/pull/3031
|
||||
.. _Pull Request 3032: https://github.com/galaxyproject/galaxy/pull/3032
|
||||
.. _Pull Request 3033: https://github.com/galaxyproject/galaxy/pull/3033
|
||||
.. _Pull Request 3035: https://github.com/galaxyproject/galaxy/pull/3035
|
||||
.. _Pull Request 3036: https://github.com/galaxyproject/galaxy/pull/3036
|
||||
.. _Pull Request 3037: https://github.com/galaxyproject/galaxy/pull/3037
|
||||
.. _Pull Request 3039: https://github.com/galaxyproject/galaxy/pull/3039
|
||||
.. _Pull Request 3040: https://github.com/galaxyproject/galaxy/pull/3040
|
||||
.. _Pull Request 3041: https://github.com/galaxyproject/galaxy/pull/3041
|
||||
.. _Pull Request 3042: https://github.com/galaxyproject/galaxy/pull/3042
|
||||
.. _Pull Request 3043: https://github.com/galaxyproject/galaxy/pull/3043
|
||||
.. _Pull Request 3044: https://github.com/galaxyproject/galaxy/pull/3044
|
||||
.. _Pull Request 3045: https://github.com/galaxyproject/galaxy/pull/3045
|
||||
.. _Pull Request 3046: https://github.com/galaxyproject/galaxy/pull/3046
|
||||
.. _Pull Request 3047: https://github.com/galaxyproject/galaxy/pull/3047
|
||||
.. _Pull Request 3049: https://github.com/galaxyproject/galaxy/pull/3049
|
||||
.. _Pull Request 3051: https://github.com/galaxyproject/galaxy/pull/3051
|
||||
.. _Pull Request 3052: https://github.com/galaxyproject/galaxy/pull/3052
|
||||
.. _Pull Request 3053: https://github.com/galaxyproject/galaxy/pull/3053
|
||||
.. _Pull Request 3056: https://github.com/galaxyproject/galaxy/pull/3056
|
||||
.. _Pull Request 3059: https://github.com/galaxyproject/galaxy/pull/3059
|
||||
.. _Pull Request 3060: https://github.com/galaxyproject/galaxy/pull/3060
|
||||
.. _Pull Request 3062: https://github.com/galaxyproject/galaxy/pull/3062
|
||||
.. _Pull Request 3070: https://github.com/galaxyproject/galaxy/pull/3070
|
||||
.. _Pull Request 3071: https://github.com/galaxyproject/galaxy/pull/3071
|
||||
.. _Pull Request 3072: https://github.com/galaxyproject/galaxy/pull/3072
|
||||
.. _Pull Request 3073: https://github.com/galaxyproject/galaxy/pull/3073
|
||||
.. _Pull Request 3074: https://github.com/galaxyproject/galaxy/pull/3074
|
||||
.. _Pull Request 3077: https://github.com/galaxyproject/galaxy/pull/3077
|
||||
.. _Pull Request 3079: https://github.com/galaxyproject/galaxy/pull/3079
|
||||
.. _Pull Request 3080: https://github.com/galaxyproject/galaxy/pull/3080
|
||||
.. _Pull Request 3082: https://github.com/galaxyproject/galaxy/pull/3082
|
||||
.. _Pull Request 3086: https://github.com/galaxyproject/galaxy/pull/3086
|
||||
.. _Pull Request 3087: https://github.com/galaxyproject/galaxy/pull/3087
|
||||
.. _Pull Request 3089: https://github.com/galaxyproject/galaxy/pull/3089
|
||||
.. _Pull Request 3091: https://github.com/galaxyproject/galaxy/pull/3091
|
||||
.. _Pull Request 3095: https://github.com/galaxyproject/galaxy/pull/3095
|
||||
.. _Pull Request 3097: https://github.com/galaxyproject/galaxy/pull/3097
|
||||
.. _Pull Request 3098: https://github.com/galaxyproject/galaxy/pull/3098
|
||||
.. _Pull Request 3099: https://github.com/galaxyproject/galaxy/pull/3099
|
||||
.. _Pull Request 3100: https://github.com/galaxyproject/galaxy/pull/3100
|
||||
.. _Pull Request 3102: https://github.com/galaxyproject/galaxy/pull/3102
|
||||
.. _Pull Request 3103: https://github.com/galaxyproject/galaxy/pull/3103
|
||||
.. _Pull Request 3105: https://github.com/galaxyproject/galaxy/pull/3105
|
||||
.. _Pull Request 3108: https://github.com/galaxyproject/galaxy/pull/3108
|
||||
.. _Pull Request 3109: https://github.com/galaxyproject/galaxy/pull/3109
|
||||
.. _Pull Request 3110: https://github.com/galaxyproject/galaxy/pull/3110
|
||||
.. _Pull Request 3113: https://github.com/galaxyproject/galaxy/pull/3113
|
||||
.. _Pull Request 3116: https://github.com/galaxyproject/galaxy/pull/3116
|
||||
.. _Pull Request 3119: https://github.com/galaxyproject/galaxy/pull/3119
|
||||
.. _Pull Request 3122: https://github.com/galaxyproject/galaxy/pull/3122
|
||||
.. _Pull Request 3123: https://github.com/galaxyproject/galaxy/pull/3123
|
||||
.. _Pull Request 3124: https://github.com/galaxyproject/galaxy/pull/3124
|
||||
.. _Pull Request 3125: https://github.com/galaxyproject/galaxy/pull/3125
|
||||
.. _Pull Request 3129: https://github.com/galaxyproject/galaxy/pull/3129
|
||||
.. _Pull Request 3130: https://github.com/galaxyproject/galaxy/pull/3130
|
||||
.. _Pull Request 3131: https://github.com/galaxyproject/galaxy/pull/3131
|
||||
.. _Pull Request 3132: https://github.com/galaxyproject/galaxy/pull/3132
|
||||
.. _Pull Request 3135: https://github.com/galaxyproject/galaxy/pull/3135
|
||||
.. _Pull Request 3139: https://github.com/galaxyproject/galaxy/pull/3139
|
||||
.. _Pull Request 3140: https://github.com/galaxyproject/galaxy/pull/3140
|
||||
.. _Pull Request 3141: https://github.com/galaxyproject/galaxy/pull/3141
|
||||
.. _Pull Request 3149: https://github.com/galaxyproject/galaxy/pull/3149
|
||||
.. _Pull Request 3154: https://github.com/galaxyproject/galaxy/pull/3154
|
||||
.. _Pull Request 3155: https://github.com/galaxyproject/galaxy/pull/3155
|
||||
.. _Pull Request 3165: https://github.com/galaxyproject/galaxy/pull/3165
|
||||
.. _Pull Request 3167: https://github.com/galaxyproject/galaxy/pull/3167
|
||||
.. _Pull Request 3169: https://github.com/galaxyproject/galaxy/pull/3169
|
||||
.. _Pull Request 3170: https://github.com/galaxyproject/galaxy/pull/3170
|
||||
.. _Pull Request 3176: https://github.com/galaxyproject/galaxy/pull/3176
|
||||
.. _Pull Request 3177: https://github.com/galaxyproject/galaxy/pull/3177
|
||||
.. _Pull Request 3180: https://github.com/galaxyproject/galaxy/pull/3180
|
||||
.. _Pull Request 3183: https://github.com/galaxyproject/galaxy/pull/3183
|
||||
.. _Pull Request 3184: https://github.com/galaxyproject/galaxy/pull/3184
|
||||
.. _Pull Request 3187: https://github.com/galaxyproject/galaxy/pull/3187
|
||||
.. _Pull Request 3188: https://github.com/galaxyproject/galaxy/pull/3188
|
||||
.. _Pull Request 3191: https://github.com/galaxyproject/galaxy/pull/3191
|
||||
.. _Pull Request 3198: https://github.com/galaxyproject/galaxy/pull/3198
|
||||
.. _Pull Request 3203: https://github.com/galaxyproject/galaxy/pull/3203
|
||||
.. _Pull Request 3205: https://github.com/galaxyproject/galaxy/pull/3205
|
||||
.. _Pull Request 3210: https://github.com/galaxyproject/galaxy/pull/3210
|
||||
.. _Pull Request 3226: https://github.com/galaxyproject/galaxy/pull/3226
|
||||
.. _Pull Request 3227: https://github.com/galaxyproject/galaxy/pull/3227
|
||||
.. _Pull Request 3232: https://github.com/galaxyproject/galaxy/pull/3232
|
||||
.. _Pull Request 3262: https://github.com/galaxyproject/galaxy/pull/3262
|
||||
|
||||
@@ -3,8 +3,39 @@
|
||||
October 2016 Galaxy Release (v 16.10)
|
||||
===========================================================
|
||||
|
||||
.. include:: _header.rst
|
||||
|
||||
Schedule
|
||||
Highlights
|
||||
===========================================================
|
||||
* Planned Freeze Date: 2016-10-03
|
||||
* Planned Release Date: 2016-10-24
|
||||
|
||||
**Feature1**
|
||||
Feature description.
|
||||
|
||||
**Feature2**
|
||||
Feature description.
|
||||
|
||||
**Feature3**
|
||||
Feature description.
|
||||
|
||||
`Github <https://github.com/galaxyproject/galaxy>`__
|
||||
===========================================================
|
||||
|
||||
New Galaxy repository
|
||||
.. code-block:: shell
|
||||
|
||||
$ git clone -b release_16.10 https://github.com/galaxyproject/galaxy.git
|
||||
|
||||
Update of existing Galaxy repository
|
||||
.. code-block:: shell
|
||||
|
||||
$ git checkout release_16.10 && git pull --ff-only origin release_16.10
|
||||
|
||||
See `our wiki <https://wiki.galaxyproject.org/Develop/SourceCode>`__ for additional details regarding the source code locations.
|
||||
|
||||
Release Notes
|
||||
===========================================================
|
||||
|
||||
.. include:: 16.10.rst
|
||||
:start-after: announce_start
|
||||
|
||||
.. include:: _thanks.rst
|
||||
|
||||
@@ -0,0 +1,10 @@
|
||||
|
||||
===========================================================
|
||||
January 2017 Galaxy Release (v 17.01)
|
||||
===========================================================
|
||||
|
||||
|
||||
Schedule
|
||||
===========================================================
|
||||
* Planned Freeze Date: 2017-01-02
|
||||
* Planned Release Date: 2017-01-23
|
||||
@@ -105,12 +105,12 @@ Highlights
|
||||
New Galaxy repository
|
||||
.. code-block:: shell
|
||||
|
||||
$ git clone -b release_${release} https://github.com/galaxyproject/galaxy.git
|
||||
$$ git clone -b release_${release} https://github.com/galaxyproject/galaxy.git
|
||||
|
||||
Update of existing Galaxy repository
|
||||
.. code-block:: shell
|
||||
|
||||
$ git checkout release_${release} && git pull --ff-only origin release_${release}
|
||||
$$ git checkout release_${release} && git pull --ff-only origin release_${release}
|
||||
|
||||
See `our wiki <https://wiki.galaxyproject.org/Develop/SourceCode>`__ for additional details regarding the source code locations.
|
||||
|
||||
@@ -491,7 +491,7 @@ def main(argv):
|
||||
text = ".. _Pull Request {0}: {1}/pull/{0}".format(pull_request, PROJECT_URL)
|
||||
history = extend(".. github_links", text)
|
||||
if owner:
|
||||
to_doc += "\n(thanks to `@%s <https://github.com/%s>`__.)" % (
|
||||
to_doc += "\n(thanks to `@%s <https://github.com/%s>`__)." % (
|
||||
owner, owner,
|
||||
)
|
||||
to_doc += "\n`Pull Request {0}`_".format(pull_request)
|
||||
|
||||
Reference in New Issue
Block a user