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Fix for find_diag_hits, should now properly load and pass functional test.

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Greg Von Kuster
2008-03-26 15:01:55 +00:00
parent 4e615f8e7c
commit a628ce6813
1 changed files with 3 additions and 3 deletions
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tools/taxonomy/find_diag_hits.xml
+3 -3
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@@ -3,7 +3,7 @@
<command interpreter="python">find_diag_hits.py $input1 $id_col $rank_list $out_format $out_file1</command>
<inputs>
<param format="taxonomy" name="input1" type="data" label="Find diagnostic hits in"/>
<param name="id_col" type="data_column" data_ref="input" numerical="False" label="Select column with sequence id" />
<param name="id_col" type="data_column" data_ref="input1" numerical="False" label="Select column with sequence id" />
<param name="rank_list" type="select" display="checkboxes" multiple="true" label="select taxonomic ranks">
<option value="superkingdom">Superkingdom</option>
<option value="kingdom">Kingdom</option>
@@ -37,11 +37,11 @@
</outputs>
<tests>
<test>
<param name="input1" value="taxonomyGI.dat" type="taxonomy"/>
<param name="input1" value="taxonomyGI.dat" ftype="taxonomy"/>
<param name="id_col" value="1" />
<param name="rank_list" value="order,genus" />
<param name="out_format" value="counts" />
<output name="out_file1" file="find_diag_hits.dat"/>
<output name="out_file1" file="find_diag_hits.dat" ftype="tabular"/>
</test>
</tests>