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Sample locally cached data files used by certain Galaxy tools.

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This commit is contained in:
Greg Von Kuster
2008-03-20 14:21:01 +00:00
parent 8c075e0d70
commit a2ed07169d
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#This is a sample file distributed with Galaxy that enables tools
#to use ENCODE data. The encode_datasets.loc file has this format
#(white space characters are TAB characters):
#
#<EncodeGroup> <build> <DisplayName> <UniqueID> <FullPathToFile> <Format>
# Encode Groups: ShortHandCode = Group
# CC = chromatin and chromosomes
# GT = genes and transcripts
# MSA = multi-species sequence analysis
# TR = transcription regulation
# ALD = All Latest Datasets
#All files are assumbed to be BED.
#
ALD hg17 Latest Datasets (20051208) all_latest_datasets.20051208.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.bed bed
ALD hg17 Latest Datasets (20051208) [gencode_partitioned] all_latest_datasets.20051208.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20051208) [gencode_partitioned] all_latest_datasets.20051208.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20051208) all_latest_datasets.20051208.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gff gff
ALD hg17 Latest Datasets (20051209) all_latest_datasets.20051209.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.bed bed
ALD hg17 Latest Datasets (20051209) [gencode_partitioned] all_latest_datasets.20051209.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20051209) [gencode_partitioned] all_latest_datasets.20051209.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20051209) all_latest_datasets.20051209.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gff gff
ALD hg17 Latest Datasets (20051211) all_latest_datasets.20051211.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.bed bed
ALD hg17 Latest Datasets (20051211) [gencode_partitioned] all_latest_datasets.20051211.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20051211) [gencode_partitioned] all_latest_datasets.20051211.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20051211) all_latest_datasets.20051211.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gff gff
ALD hg17 Latest Datasets (20051212) all_latest_datasets.20051212.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.bed bed
ALD hg17 Latest Datasets (20051212) [gencode_partitioned] all_latest_datasets.20051212.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20051212) [gencode_partitioned] all_latest_datasets.20051212.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20051212) all_latest_datasets.20051212.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gff gff
ALD hg17 Latest Datasets (20051214) all_latest_datasets.20051214.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.bed bed
ALD hg17 Latest Datasets (20051214) [gencode_partitioned] all_latest_datasets.20051214.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20051214) [gencode_partitioned] all_latest_datasets.20051214.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20051214) all_latest_datasets.20051214.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gff gff
ALD hg17 Latest Datasets (20051216) all_latest_datasets.20051216.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.bed bed
ALD hg17 Latest Datasets (20051216) [gencode_partitioned] all_latest_datasets.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20051216) [gencode_partitioned] all_latest_datasets.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20051216) all_latest_datasets.20051216.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gff gff
ALD hg17 Latest Datasets (20060105) all_latest_datasets.20060105.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.bed bed
ALD hg17 Latest Datasets (20060105) [gencode_partitioned] all_latest_datasets.20060105.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20060105) [gencode_partitioned] all_latest_datasets.20060105.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20060105) all_latest_datasets.20060105.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gff gff
ALD hg17 Latest Datasets (20060106) all_latest_datasets.20060106.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.bed bed
ALD hg17 Latest Datasets (20060106) [gencode_partitioned] all_latest_datasets.20060106.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20060106) [gencode_partitioned] all_latest_datasets.20060106.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20060106) all_latest_datasets.20060106.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gff gff
ALD hg17 Latest Datasets (20060116) all_latest_datasets.20060116.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.bed bed
ALD hg17 Latest Datasets (20060116) [gencode_partitioned] all_latest_datasets.20060116.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20060116) [gencode_partitioned] all_latest_datasets.20060116.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20060116) all_latest_datasets.20060116.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gff gff
ALD hg17 Latest Datasets (20060124) all_latest_datasets.20060124.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.bed bed
ALD hg17 Latest Datasets (20060124) [gencode_partitioned] all_latest_datasets.20060124.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20060124) [gencode_partitioned] all_latest_datasets.20060124.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20060124) all_latest_datasets.20060124.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gff gff
ALD hg17 Latest Datasets (20060204) all_latest_datasets.20060204.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.bed bed
ALD hg17 Latest Datasets (20060204) [gencode_partitioned] all_latest_datasets.20060204.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20060204) [gencode_partitioned] all_latest_datasets.20060204.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20060204) all_latest_datasets.20060204.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gff gff
ALD hg17 Latest Datasets (20060206) all_latest_datasets.20060206.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.bed bed
ALD hg17 Latest Datasets (20060206) [gencode_partitioned] all_latest_datasets.20060206.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20060206) [gencode_partitioned] all_latest_datasets.20060206.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20060206) all_latest_datasets.20060206.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gff gff
ALD hg17 Latest Datasets (20060209) [gencode_partitioned] all_latest_datasets.20060209.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060209.gencode_partitioned.bed bed
CC hg17 EarlyRepSeg (20051216) cc.EarlyRepSeg.20051216.bed /depot/data2/galaxy/encode-data/datasets/cc.EarlyRepSeg.20051216.bed bed
CC hg17 EarlyRepSeg (20051216) [gencode_partitioned] cc.EarlyRepSeg.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.EarlyRepSeg.20051216.gencode_partitioned.bed bed
CC hg17 EarlyRepSeg (20051216) [gencode_partitioned] cc.EarlyRepSeg.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.EarlyRepSeg.20051216.gencode_partitioned.gff gff
CC hg17 EarlyRepSeg (20051216) cc.EarlyRepSeg.20051216.gff /depot/data2/galaxy/encode-data/datasets/cc.EarlyRepSeg.20051216.gff gff
CC hg17 LateRepSeg (20051216) cc.LateRepSeg.20051216.bed /depot/data2/galaxy/encode-data/datasets/cc.LateRepSeg.20051216.bed bed
CC hg17 LateRepSeg (20051216) [gencode_partitioned] cc.LateRepSeg.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.LateRepSeg.20051216.gencode_partitioned.bed bed
CC hg17 LateRepSeg (20051216) [gencode_partitioned] cc.LateRepSeg.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.LateRepSeg.20051216.gencode_partitioned.gff gff
CC hg17 LateRepSeg (20051216) cc.LateRepSeg.20051216.gff /depot/data2/galaxy/encode-data/datasets/cc.LateRepSeg.20051216.gff gff
CC hg17 MidRepSeg (20051216) cc.MidRepSeg.20051216.bed /depot/data2/galaxy/encode-data/datasets/cc.MidRepSeg.20051216.bed bed
CC hg17 MidRepSeg (20051216) [gencode_partitioned] cc.MidRepSeg.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.MidRepSeg.20051216.gencode_partitioned.bed bed
CC hg17 MidRepSeg (20051216) [gencode_partitioned] cc.MidRepSeg.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.MidRepSeg.20051216.gencode_partitioned.gff gff
CC hg17 MidRepSeg (20051216) cc.MidRepSeg.20051216.gff /depot/data2/galaxy/encode-data/datasets/cc.MidRepSeg.20051216.gff gff
CC hg17 nhgriHss (20051208) cc.nhgriHss.20051208.bed /depot/data2/galaxy/encode-data/datasets/cc.nhgriHss.20051208.bed bed
CC hg17 nhgriHss (20051208) [gencode_partitioned] cc.nhgriHss.20051208.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.nhgriHss.20051208.gencode_partitioned.bed bed
CC hg17 nhgriHss (20051208) [gencode_partitioned] cc.nhgriHss.20051208.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.nhgriHss.20051208.gencode_partitioned.gff gff
CC hg17 nhgriHss (20051208) cc.nhgriHss.20051208.gff /depot/data2/galaxy/encode-data/datasets/cc.nhgriHss.20051208.gff gff
CC hg17 PanSRepSeg (20051216) cc.PanSRepSeg.20051216.bed /depot/data2/galaxy/encode-data/datasets/cc.PanSRepSeg.20051216.bed bed
CC hg17 PanSRepSeg (20051216) [gencode_partitioned] cc.PanSRepSeg.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.PanSRepSeg.20051216.gencode_partitioned.bed bed
CC hg17 PanSRepSeg (20051216) [gencode_partitioned] cc.PanSRepSeg.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.PanSRepSeg.20051216.gencode_partitioned.gff gff
CC hg17 PanSRepSeg (20051216) cc.PanSRepSeg.20051216.gff /depot/data2/galaxy/encode-data/datasets/cc.PanSRepSeg.20051216.gff gff
CC hg17 PredictedOrigin (20051216) cc.PredictedOrigin.20051216.bed /depot/data2/galaxy/encode-data/datasets/cc.PredictedOrigin.20051216.bed bed
CC hg17 PredictedOrigin (20051216) [gencode_partitioned] cc.PredictedOrigin.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.PredictedOrigin.20051216.gencode_partitioned.bed bed
CC hg17 PredictedOrigin (20051216) [gencode_partitioned] cc.PredictedOrigin.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.PredictedOrigin.20051216.gencode_partitioned.gff gff
CC hg17 PredictedOrigin (20051216) cc.PredictedOrigin.20051216.gff /depot/data2/galaxy/encode-data/datasets/cc.PredictedOrigin.20051216.gff gff
CC hg17 regulomeHss (20051208) cc.regulomeHss.20051208.bed /depot/data2/galaxy/encode-data/datasets/cc.regulomeHss.20051208.bed bed
CC hg17 regulomeHss (20051208) [gencode_partitioned] cc.regulomeHss.20051208.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.regulomeHss.20051208.gencode_partitioned.bed bed
CC hg17 regulomeHss (20051208) [gencode_partitioned] cc.regulomeHss.20051208.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.regulomeHss.20051208.gencode_partitioned.gff gff
CC hg17 regulomeHss (20051208) cc.regulomeHss.20051208.gff /depot/data2/galaxy/encode-data/datasets/cc.regulomeHss.20051208.gff gff
CC hg17 uncFAIREsites (20051213) cc.uncFAIREsites.20051213.bed /depot/data2/galaxy/encode-data/datasets/cc.uncFAIREsites.20051213.bed bed
CC hg17 uncFAIREsites (20051213) [gencode_partitioned] cc.uncFAIREsites.20051213.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.uncFAIREsites.20051213.gencode_partitioned.bed bed
CC hg17 uncFAIREsites (20051213) [gencode_partitioned] cc.uncFAIREsites.20051213.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.uncFAIREsites.20051213.gencode_partitioned.gff gff
CC hg17 uncFAIREsites (20051213) cc.uncFAIREsites.20051213.gff /depot/data2/galaxy/encode-data/datasets/cc.uncFAIREsites.20051213.gff gff
GENCODE hg17 3UTR (20051206) gencode.3UTR.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.3UTR.20051206.bed bed
GENCODE hg17 5UTR (20051206) gencode.5UTR.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.5UTR.20051206.bed bed
GENCODE hg17 CDS (20051206) gencode.CDS.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.CDS.20051206.bed bed
GENCODE hg17 intergenic_distal (20051206) gencode.intergenic_distal.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.intergenic_distal.20051206.bed bed
GENCODE hg17 intergenic_proximal (20051206) gencode.intergenic_proximal.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.intergenic_proximal.20051206.bed bed
GENCODE hg17 intronic_distal (20051206) gencode.intronic_distal.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.intronic_distal.20051206.bed bed
GENCODE hg17 intronic_proximal (20051206) gencode.intronic_proximal.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.intronic_proximal.20051206.bed bed