opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-24 16:30:27 +08:00
Code Issues Packages Projects Releases Wiki Activity

Update tool_conf.xml.* to only use the generic python FASTQ to FASTA converter by default.

Browse Source
This commit is contained in:
Daniel Blankenberg
2010-06-10 09:25:37 -04:00
parent dcfeb36f7c
commit a0b41dc0a9
2 changed files with 8 additions and 4 deletions
Download Patch File Download Diff File Expand all files Collapse all files
tool_conf.xml.main
+4 -2
View File
@@ -52,7 +52,7 @@
<tool file="maf/maf_to_interval.xml" />
<tool file="maf/maf_to_fasta.xml" />
<tool file="fasta_tools/tabular_to_fasta.xml" />
<tool file="fastx_toolkit/fastq_to_fasta.xml" />
<tool file="fastq/fastq_to_fasta.xml" />
</section>
<section name="FASTA manipulation" id="fasta_manipulation">
<tool file="fasta_tools/fasta_compute_length.xml" />
@@ -289,7 +289,9 @@
<tool file="fastx_toolkit/fastx_quality_statistics.xml" />
<tool file="fastx_toolkit/fastq_quality_boxplot.xml" />
<tool file="fastx_toolkit/fastx_nucleotides_distribution.xml" />
<tool file="metag_tools/split_paired_reads.xml" /> -->
<tool file="metag_tools/split_paired_reads.xml" />
<tool file="fastx_toolkit/fastq_to_fasta.xml" />
-->
<label text="Roche-454 data" id="454" />
<tool file="metag_tools/short_reads_figure_score.xml" />
<tool file="metag_tools/short_reads_trim_seq.xml" />
tool_conf.xml.sample
+4 -2
View File
@@ -80,7 +80,7 @@
<tool file="maf/maf_to_interval.xml" />
<tool file="maf/maf_to_fasta.xml" />
<tool file="fasta_tools/tabular_to_fasta.xml" />
<tool file="fastx_toolkit/fastq_to_fasta.xml" />
<tool file="fastq/fastq_to_fasta.xml" />
<tool file="filters/wiggle_to_simple.xml" />
<tool file="filters/sff_extractor.xml" />
<tool file="filters/gtf2bedgraph.xml" />
@@ -212,7 +212,9 @@
<tool file="fastx_toolkit/fastx_quality_statistics.xml" />
<tool file="fastx_toolkit/fastq_quality_boxplot.xml" />
<tool file="fastx_toolkit/fastx_nucleotides_distribution.xml" />
<tool file="metag_tools/split_paired_reads.xml" /> -->
<tool file="metag_tools/split_paired_reads.xml"
<tool file="fastx_toolkit/fastq_to_fasta.xml" />
-->
<label text="Roche-454 data" id="454" />
<tool file="metag_tools/short_reads_figure_score.xml" />
<tool file="metag_tools/short_reads_trim_seq.xml" />