mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Merge branch 'release_24.0' into release_24.1
# Conflicts: # lib/galaxy/version.py # packages/app/HISTORY.rst # packages/app/setup.cfg # packages/auth/HISTORY.rst # packages/auth/setup.cfg # packages/config/HISTORY.rst # packages/config/setup.cfg # packages/data/HISTORY.rst # packages/data/setup.cfg # packages/files/HISTORY.rst # packages/files/setup.cfg # packages/job_execution/HISTORY.rst # packages/job_execution/setup.cfg # packages/job_metrics/HISTORY.rst # packages/job_metrics/setup.cfg # packages/navigation/HISTORY.rst # packages/navigation/setup.cfg # packages/objectstore/HISTORY.rst # packages/objectstore/setup.cfg # packages/schema/HISTORY.rst # packages/schema/setup.cfg # packages/selenium/HISTORY.rst # packages/selenium/setup.cfg # packages/test_api/HISTORY.rst # packages/test_api/setup.cfg # packages/test_base/HISTORY.rst # packages/test_base/setup.cfg # packages/test_driver/HISTORY.rst # packages/test_driver/setup.cfg # packages/tool_shed/HISTORY.rst # packages/tool_shed/setup.cfg # packages/tool_util/HISTORY.rst # packages/tool_util/setup.cfg # packages/tours/HISTORY.rst # packages/tours/setup.cfg # packages/util/HISTORY.rst # packages/util/setup.cfg # packages/web_apps/HISTORY.rst # packages/web_apps/setup.cfg # packages/web_framework/HISTORY.rst # packages/web_framework/setup.cfg # packages/web_stack/HISTORY.rst # packages/web_stack/setup.cfg
This commit is contained in:
@@ -3,12 +3,62 @@ History
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24.1.dev0
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24.1.0.dev0
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-------------------
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24.0.3 (2024-06-28)
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-------------------
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||||
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||||
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||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Raise exception if collection elements missing during download by `@jdavcs <https://github.com/jdavcs>`_ in `#18094 <https://github.com/galaxyproject/galaxy/pull/18094>`_
|
||||
* Allow purge query param, deprecate purge body param by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18105 <https://github.com/galaxyproject/galaxy/pull/18105>`_
|
||||
* Backport OIDC schema fix by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18111 <https://github.com/galaxyproject/galaxy/pull/18111>`_
|
||||
* Don't log exception if cancelled slurm job doesn't have stderr file by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18121 <https://github.com/galaxyproject/galaxy/pull/18121>`_
|
||||
* Downgrade missing output file in working directory to warning for failed jobs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18123 <https://github.com/galaxyproject/galaxy/pull/18123>`_
|
||||
* Fix data default values not getting added to history by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18132 <https://github.com/galaxyproject/galaxy/pull/18132>`_
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* Drop redundant error message by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18156 <https://github.com/galaxyproject/galaxy/pull/18156>`_
|
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* Emit warning when user-cancelled job already complete by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18178 <https://github.com/galaxyproject/galaxy/pull/18178>`_
|
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* Avoid object store path lookup when constructing JobState object by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18190 <https://github.com/galaxyproject/galaxy/pull/18190>`_
|
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* Add string cast for dbkey / genome_build by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18207 <https://github.com/galaxyproject/galaxy/pull/18207>`_
|
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* Check dataset state when attempting to acces dataset contents by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18214 <https://github.com/galaxyproject/galaxy/pull/18214>`_
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* Don't set dataset peek for errored jobs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18231 <https://github.com/galaxyproject/galaxy/pull/18231>`_
|
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* Raise exception when extracting dataset from collection without datasets by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18249 <https://github.com/galaxyproject/galaxy/pull/18249>`_
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* Skip tests if toolshed, dx.doi not responding by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18250 <https://github.com/galaxyproject/galaxy/pull/18250>`_
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* Don't attempt to download purged datasets by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18278 <https://github.com/galaxyproject/galaxy/pull/18278>`_
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* Check various preconditions in FeatureLocationIndexDataProvider by `@davelopez <https://github.com/davelopez>`_ in `#18283 <https://github.com/galaxyproject/galaxy/pull/18283>`_
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* Don't serialize display application links for deleted datasets by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18307 <https://github.com/galaxyproject/galaxy/pull/18307>`_
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* Downgrade doi fetch error to debug by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18330 <https://github.com/galaxyproject/galaxy/pull/18330>`_
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* Fix authentication error for anonymous users querying jobs by `@davelopez <https://github.com/davelopez>`_ in `#18333 <https://github.com/galaxyproject/galaxy/pull/18333>`_
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* Fix seek in slurm memory check by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18338 <https://github.com/galaxyproject/galaxy/pull/18338>`_
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* Do not copy purged outputs to object store by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18342 <https://github.com/galaxyproject/galaxy/pull/18342>`_
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* Kill pulsar job if job stopped on galaxy side by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18348 <https://github.com/galaxyproject/galaxy/pull/18348>`_
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* Allow DCE as outer input to to_cwl by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18349 <https://github.com/galaxyproject/galaxy/pull/18349>`_
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* Fix anonymous user job retrieval logic by `@davelopez <https://github.com/davelopez>`_ in `#18358 <https://github.com/galaxyproject/galaxy/pull/18358>`_
|
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* Fix update group API payload model by `@davelopez <https://github.com/davelopez>`_ in `#18374 <https://github.com/galaxyproject/galaxy/pull/18374>`_
|
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* Fix user's private role can be missing by `@davelopez <https://github.com/davelopez>`_ in `#18381 <https://github.com/galaxyproject/galaxy/pull/18381>`_
|
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* Fix null inputs in database operation tools by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18385 <https://github.com/galaxyproject/galaxy/pull/18385>`_
|
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* Assign default ``data`` extension on discovered collection output by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18389 <https://github.com/galaxyproject/galaxy/pull/18389>`_
|
||||
* Fix ``get_accessible_job`` if called without session by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18400 <https://github.com/galaxyproject/galaxy/pull/18400>`_
|
||||
* Fix invocation step_job_summary for new collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18402 <https://github.com/galaxyproject/galaxy/pull/18402>`_
|
||||
* Really allow in-range validator for txt by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18411 <https://github.com/galaxyproject/galaxy/pull/18411>`_
|
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* Fix collection map over status for dragged collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18416 <https://github.com/galaxyproject/galaxy/pull/18416>`_
|
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* Serialize purged flag for datasets in collections by `@davelopez <https://github.com/davelopez>`_ in `#18420 <https://github.com/galaxyproject/galaxy/pull/18420>`_
|
||||
|
||||
=============
|
||||
Other changes
|
||||
=============
|
||||
|
||||
* Minor linting cleanup by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18421 <https://github.com/galaxyproject/galaxy/pull/18421>`_
|
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* Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18428 <https://github.com/galaxyproject/galaxy/pull/18428>`_
|
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-------------------
|
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24.0.2 (2024-05-07)
|
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-------------------
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@@ -3,12 +3,18 @@ History
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.. to_doc
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---------
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24.1.dev0
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|
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24.1.0.dev0
|
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-----------
|
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|
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-------------------
|
||||
24.0.3 (2024-06-28)
|
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-------------------
|
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No recorded changes since last release
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-------------------
|
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24.0.2 (2024-05-07)
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-------------------
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@@ -3,12 +3,30 @@ History
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.. to_doc
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---------
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24.1.dev0
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|
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24.1.0.dev0
|
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-----------
|
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|
||||
|
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|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Backport OIDC schema fix by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18111 <https://github.com/galaxyproject/galaxy/pull/18111>`_
|
||||
* Minor fix to enable external hgweb process by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18256 <https://github.com/galaxyproject/galaxy/pull/18256>`_
|
||||
|
||||
=============
|
||||
Other changes
|
||||
=============
|
||||
|
||||
* Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18428 <https://github.com/galaxyproject/galaxy/pull/18428>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,37 @@ History
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|
||||
.. to_doc
|
||||
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---------
|
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24.1.dev0
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---------
|
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-----------
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||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
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-------------------
|
||||
24.0.3 (2024-06-28)
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||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Downgrade count lines error to warning by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18175 <https://github.com/galaxyproject/galaxy/pull/18175>`_
|
||||
* Don't set dataset peek for errored jobs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18231 <https://github.com/galaxyproject/galaxy/pull/18231>`_
|
||||
* Transparently open compressed files in DatasetDataProvider by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18248 <https://github.com/galaxyproject/galaxy/pull/18248>`_
|
||||
* Raise exception when extracting dataset from collection without datasets by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18249 <https://github.com/galaxyproject/galaxy/pull/18249>`_
|
||||
* Set page importable to false when serializing by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18263 <https://github.com/galaxyproject/galaxy/pull/18263>`_
|
||||
* Fix first_dataset_element type hint by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18284 <https://github.com/galaxyproject/galaxy/pull/18284>`_
|
||||
* Do not copy purged outputs to object store by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18342 <https://github.com/galaxyproject/galaxy/pull/18342>`_
|
||||
* Fix user's private role can be missing by `@davelopez <https://github.com/davelopez>`_ in `#18381 <https://github.com/galaxyproject/galaxy/pull/18381>`_
|
||||
* Assign default ``data`` extension on discovered collection output by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18389 <https://github.com/galaxyproject/galaxy/pull/18389>`_
|
||||
|
||||
=============
|
||||
Other changes
|
||||
=============
|
||||
|
||||
* Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18428 <https://github.com/galaxyproject/galaxy/pull/18428>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,27 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Fix listing possibly untitled records in Invenio Plugin by `@davelopez <https://github.com/davelopez>`_ in `#18130 <https://github.com/galaxyproject/galaxy/pull/18130>`_
|
||||
* Raise ``RequestParameterInvalidException`` when url is invalid by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18155 <https://github.com/galaxyproject/galaxy/pull/18155>`_
|
||||
* Fix error message when accessing restricted Zenodo records by `@davelopez <https://github.com/davelopez>`_ in `#18169 <https://github.com/galaxyproject/galaxy/pull/18169>`_
|
||||
* Raise ``RequestParameterInvalidException`` if url can't be verified by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18230 <https://github.com/galaxyproject/galaxy/pull/18230>`_
|
||||
* Fix Invenio credentials handling by `@davelopez <https://github.com/davelopez>`_ in `#18255 <https://github.com/galaxyproject/galaxy/pull/18255>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,27 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Include traceback when logging email PJA exception by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18122 <https://github.com/galaxyproject/galaxy/pull/18122>`_
|
||||
* Don't commit in ``DeleteIntermediatesAction`` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18131 <https://github.com/galaxyproject/galaxy/pull/18131>`_
|
||||
* Don't fail metadata if we only have an extra output files dir by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18179 <https://github.com/galaxyproject/galaxy/pull/18179>`_
|
||||
* Don't set dataset peek for errored jobs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18231 <https://github.com/galaxyproject/galaxy/pull/18231>`_
|
||||
* Do not copy purged outputs to object store by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18342 <https://github.com/galaxyproject/galaxy/pull/18342>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,18 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
No recorded changes since last release
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,18 @@ History
|
||||
|
||||
.. to_doc
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||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
No recorded changes since last release
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,25 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Include stack when reporting delete error by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18208 <https://github.com/galaxyproject/galaxy/pull/18208>`_
|
||||
* Only log error if deleting directory really failed by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18236 <https://github.com/galaxyproject/galaxy/pull/18236>`_
|
||||
* Do not copy purged outputs to object store by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18342 <https://github.com/galaxyproject/galaxy/pull/18342>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,28 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* do not expand datasets that are known to be inaccessible by `@martenson <https://github.com/martenson>`_ in `#17818 <https://github.com/galaxyproject/galaxy/pull/17818>`_
|
||||
* Allow purge query param, deprecate purge body param by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18105 <https://github.com/galaxyproject/galaxy/pull/18105>`_
|
||||
* Fix deprecated `deprecated` argument by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18119 <https://github.com/galaxyproject/galaxy/pull/18119>`_
|
||||
* Fix users API serialization when listing users by `@davelopez <https://github.com/davelopez>`_ in `#18329 <https://github.com/galaxyproject/galaxy/pull/18329>`_
|
||||
* Fix update group API payload model by `@davelopez <https://github.com/davelopez>`_ in `#18374 <https://github.com/galaxyproject/galaxy/pull/18374>`_
|
||||
* Serialize purged flag for datasets in collections by `@davelopez <https://github.com/davelopez>`_ in `#18420 <https://github.com/galaxyproject/galaxy/pull/18420>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,18 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
No recorded changes since last release
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,26 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Allow purge query param, deprecate purge body param by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18105 <https://github.com/galaxyproject/galaxy/pull/18105>`_
|
||||
* Prevent anonymous and inactive users from running workflows by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#18192 <https://github.com/galaxyproject/galaxy/pull/18192>`_
|
||||
* Check dataset state when attempting to acces dataset contents by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18214 <https://github.com/galaxyproject/galaxy/pull/18214>`_
|
||||
* Fix update group API payload model by `@davelopez <https://github.com/davelopez>`_ in `#18374 <https://github.com/galaxyproject/galaxy/pull/18374>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,23 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Fix submitted value in workflow run form if data is constrained by tag filter by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18193 <https://github.com/galaxyproject/galaxy/pull/18193>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,24 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Skip tests if toolshed, dx.doi not responding by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18250 <https://github.com/galaxyproject/galaxy/pull/18250>`_
|
||||
* Move tool shed specific driver function to tool_shed.test by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18296 <https://github.com/galaxyproject/galaxy/pull/18296>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,25 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Add ``hgweb_repo_prefix`` attribute to ``TestToolShedConfig`` by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18268 <https://github.com/galaxyproject/galaxy/pull/18268>`_
|
||||
* Fix tool_shed package unit tests by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18327 <https://github.com/galaxyproject/galaxy/pull/18327>`_
|
||||
* Fix one more tool shed unit test by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18328 <https://github.com/galaxyproject/galaxy/pull/18328>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,26 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Allow purge query param, deprecate purge body param by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18105 <https://github.com/galaxyproject/galaxy/pull/18105>`_
|
||||
* Make sure that all Linter subclasses are imported for listing them by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18339 <https://github.com/galaxyproject/galaxy/pull/18339>`_
|
||||
* Assign default ``data`` extension on discovered collection output by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18389 <https://github.com/galaxyproject/galaxy/pull/18389>`_
|
||||
* Allow in_range validator for selects by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18403 <https://github.com/galaxyproject/galaxy/pull/18403>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,18 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
No recorded changes since last release
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,23 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Use config_section to distinguish between galaxy and ts or other apps by `@jdavcs <https://github.com/jdavcs>`_ in `#18215 <https://github.com/galaxyproject/galaxy/pull/18215>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,45 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* do not expand datasets that are known to be inaccessible by `@martenson <https://github.com/martenson>`_ in `#17818 <https://github.com/galaxyproject/galaxy/pull/17818>`_
|
||||
* Raise exception if collection elements missing during download by `@jdavcs <https://github.com/jdavcs>`_ in `#18094 <https://github.com/galaxyproject/galaxy/pull/18094>`_
|
||||
* Allow purge query param, deprecate purge body param by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18105 <https://github.com/galaxyproject/galaxy/pull/18105>`_
|
||||
* Prevent anonymous and inactive users from running workflows by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#18192 <https://github.com/galaxyproject/galaxy/pull/18192>`_
|
||||
* Fix `make all histories private` with immutable histories by `@davelopez <https://github.com/davelopez>`_ in `#18200 <https://github.com/galaxyproject/galaxy/pull/18200>`_
|
||||
* Fix pca 3d rendering of tabular files and visualization error handling in general by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18211 <https://github.com/galaxyproject/galaxy/pull/18211>`_
|
||||
* Check dataset state when attempting to acces dataset contents by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18214 <https://github.com/galaxyproject/galaxy/pull/18214>`_
|
||||
* Restrict job_files access to jobs that are not terminal by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18217 <https://github.com/galaxyproject/galaxy/pull/18217>`_
|
||||
* Raise appropriate exception if accessing deleted input file by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18223 <https://github.com/galaxyproject/galaxy/pull/18223>`_
|
||||
* Fix element serialization for collections that aren't populated yet by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18235 <https://github.com/galaxyproject/galaxy/pull/18235>`_
|
||||
* Skip new history creation if user is anonymous and login is required by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18319 <https://github.com/galaxyproject/galaxy/pull/18319>`_
|
||||
* Fix users API serialization when listing users by `@davelopez <https://github.com/davelopez>`_ in `#18329 <https://github.com/galaxyproject/galaxy/pull/18329>`_
|
||||
* Fix authentication error for anonymous users querying jobs by `@davelopez <https://github.com/davelopez>`_ in `#18333 <https://github.com/galaxyproject/galaxy/pull/18333>`_
|
||||
* Do not copy purged outputs to object store by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18342 <https://github.com/galaxyproject/galaxy/pull/18342>`_
|
||||
* Fix anonymous user job retrieval logic by `@davelopez <https://github.com/davelopez>`_ in `#18358 <https://github.com/galaxyproject/galaxy/pull/18358>`_
|
||||
* Fix update group API payload model by `@davelopez <https://github.com/davelopez>`_ in `#18374 <https://github.com/galaxyproject/galaxy/pull/18374>`_
|
||||
* Drop unnecessary escaping for workflow name and annotation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18376 <https://github.com/galaxyproject/galaxy/pull/18376>`_
|
||||
|
||||
=============
|
||||
Other changes
|
||||
=============
|
||||
|
||||
* Decrease log level for expected visualization errors by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18229 <https://github.com/galaxyproject/galaxy/pull/18229>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,24 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
|
||||
=========
|
||||
Bug fixes
|
||||
=========
|
||||
|
||||
* Reset content-length for unhandled exceptions by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18233 <https://github.com/galaxyproject/galaxy/pull/18233>`_
|
||||
* More fixes for running the TS with external hgweb by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18279 <https://github.com/galaxyproject/galaxy/pull/18279>`_
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
@@ -3,12 +3,18 @@ History
|
||||
|
||||
.. to_doc
|
||||
|
||||
---------
|
||||
24.1.dev0
|
||||
---------
|
||||
-----------
|
||||
24.1.0.dev0
|
||||
-----------
|
||||
|
||||
|
||||
|
||||
-------------------
|
||||
24.0.3 (2024-06-28)
|
||||
-------------------
|
||||
|
||||
No recorded changes since last release
|
||||
|
||||
-------------------
|
||||
24.0.2 (2024-05-07)
|
||||
-------------------
|
||||
|
||||
Reference in New Issue
Block a user