opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-24 16:30:27 +08:00
Code Issues Packages Projects Releases Wiki Activity

Merge pull request #9153 from mvdbeek/fix_cool_sniffing

Browse Source 
[19.09] Fix cool sniffing on python3
This commit is contained in:
John Chilton
2019-12-20 10:04:34 -05:00
committed by GitHub
parent 711e536cd5 e1a1584799
commit 9ae9be077a
1 changed files with 4 additions and 4 deletions
Download Patch File Download Diff File Expand all files Collapse all files
lib/galaxy/datatypes/binary.py
+4 -4
View File
@@ -1102,8 +1102,8 @@ class Cool(H5):
if super(Cool, self).sniff(filename):
keys = ['chroms', 'bins', 'pixels', 'indexes']
with h5py.File(filename, 'r') as handle:
fmt = handle.attrs.get('format')
url = handle.attrs.get('format-url')
fmt = util.unicodify(handle.attrs.get('format'))
url = util.unicodify(handle.attrs.get('format-url'))
if fmt == MAGIC or url == URL:
if not all(name in handle.keys() for name in keys):
return False
@@ -1162,8 +1162,8 @@ class MCool(H5):
return False
res0 = list(handle['resolutions'].keys())[0]
keys = ['chroms', 'bins', 'pixels', 'indexes']
fmt = handle['resolutions'][res0].attrs.get('format')
url = handle['resolutions'][res0].attrs.get('format-url')
fmt = util.unicodify(handle['resolutions'][res0].attrs.get('format'))
url = util.unicodify(handle['resolutions'][res0].attrs.get('format-url'))
if fmt == MAGIC or url == URL:
if not all(name in handle['resolutions'][res0].keys() for name in keys):
return False