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update short reads tools. add functional test data.

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This commit is contained in:
Wen-Yu Chung
2008-03-27 22:11:18 +00:00
parent 1398559f2d
commit 9adee0844d
4 changed files with 1000 additions and 3142 deletions
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test-data/454Score.pdf
+997 -3139
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tool_conf.xml.sample
+2
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@@ -265,5 +265,7 @@
<tool file="metag_tools/short_reads_trim_seq.xml" />
<tool file="metag_tools/blat_wrapper.xml" />
<tool file="metag_tools/megablast_wrapper.xml" />
<tool file="metag_tools/megablast_xml_parser.xml" />
<tool file="metag_tools/blat_coverage_report.xml" />
</section>
</toolbox>
tools/metag_tools/blat_wrapper.xml
+1 -1
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@@ -30,7 +30,7 @@
<tests>
<test>
<param name="source_select" value="database" />
<param name="dbkey" value="eschColi_K12_1" />
<param name="dbkey" value="eschColi_K12" />
<param name="input_query" value="blat_wrapper_test1.fa" ftype="fasta"/>
<param name="iden" value="90.0" />
<param name="tile_size" value="11" />
tools/metag_tools/short_reads_figure_score.xml
-2
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@@ -12,7 +12,6 @@
<outputs>
<data name="output1" format="pdf" />
</outputs>
<!--
<tests>
<test>
<param name="input1" value="solexa.qual" ftype="qualityscore" />
@@ -23,7 +22,6 @@
<output name="output1" file="454Score.pdf" />
</test>
</tests>
-->
<help>
.. class:: warningmark