opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-24 16:30:27 +08:00
Code Issues Packages Projects Releases Wiki Activity

Merge branch 'release_23.2' into release_24.0

Browse Source
This commit is contained in:
Nicola Soranzo
2024-07-08 19:38:53 +01:00
parent b183c55fbb 1b0b82f0a3
commit 9a658ae877
1 changed files with 6 additions and 5 deletions
Download Patch File Download Diff File Expand all files Collapse all files
lib/galaxy/tool_util/biotools/source.py
+6 -5
View File
@@ -54,12 +54,13 @@ class ApiBiotoolsMetadataSource(BiotoolsMetadataSource):
def _raw_get_metadata(self, biotools_reference) -> Optional[str]:
api_url = f"https://bio.tools/api/tool/{biotools_reference}?format=json"
req = requests.get(api_url, timeout=DEFAULT_SOCKET_TIMEOUT)
req.encoding = req.apparent_encoding
if req.status_code == 404:
return None
else:
try:
req = requests.get(api_url, timeout=DEFAULT_SOCKET_TIMEOUT)
req.raise_for_status()
req.encoding = req.apparent_encoding
return req.text
except Exception:
return None
def get_biotools_metadata(self, biotools_reference: str) -> Optional[BiotoolsEntry]:
createfunc = functools.partial(self._raw_get_metadata, biotools_reference)