mirror of
https://github.com/galaxyproject/galaxy.git
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Merge pull request #21104 from galaxybot/dev_auto_update_dependencies
Update Python dependencies
This commit is contained in:
Nicola Soranzo
@@ -1,7 +1,7 @@
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# This file was autogenerated by uv via the following command:
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# uv export --frozen --no-annotate --no-hashes --only-group=dev
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aiohappyeyeballs==2.6.1
|
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aiohttp==3.13.0
|
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aiohttp==3.13.1
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aiosignal==1.4.0
|
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alabaster==0.7.16 ; python_full_version < '3.10'
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alabaster==1.0.0 ; python_full_version >= '3.10'
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@@ -18,21 +18,22 @@ boto3==1.40.49
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botocore==1.40.49
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build==1.3.0
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cachecontrol==0.14.3
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cachetools==6.2.0
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cachetools==6.2.1
|
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cattrs==25.3.0
|
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certifi==2025.10.5
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cffi==2.0.0 ; (implementation_name != 'pypy' and os_name == 'nt') or platform_python_implementation != 'PyPy'
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charset-normalizer==3.4.3
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charset-normalizer==3.4.4
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click==8.1.8 ; python_full_version < '3.10'
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click==8.3.0 ; python_full_version >= '3.10'
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codespell==2.4.1
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colorama==0.4.6 ; os_name == 'nt' or sys_platform == 'win32'
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colorlog==6.9.0
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colorlog==6.10.1
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contourpy==1.3.0 ; python_full_version < '3.10'
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contourpy==1.3.2 ; python_full_version == '3.10.*'
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contourpy==1.3.3 ; python_full_version >= '3.11'
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coverage==7.10.7
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cryptography==46.0.2
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coverage==7.10.7 ; python_full_version < '3.10'
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coverage==7.11.0 ; python_full_version >= '3.10'
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cryptography==46.0.3
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cwltest==2.6.20250818005349
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cycler==0.12.1
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darker==3.0.0
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@@ -40,7 +41,8 @@ darkgraylib==2.4.0
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decorator==5.2.1
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defusedxml==0.7.1
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docutils==0.21.2
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dogpile-cache==1.4.1
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dogpile-cache==1.4.1 ; python_full_version < '3.10'
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dogpile-cache==1.5.0 ; python_full_version >= '3.10'
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enum-tools==0.12.0 ; python_full_version >= '3.10'
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exceptiongroup==1.3.0 ; python_full_version < '3.11'
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filelock==3.19.1 ; python_full_version < '3.10'
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@@ -56,14 +58,16 @@ html5rdf==1.2.1 ; python_full_version >= '3.10'
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httpcore==1.0.9
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httpx==0.28.1
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id==1.5.0
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idna==3.10
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idna==3.11
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imagesize==1.4.1
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importlib-metadata==8.7.0 ; python_full_version < '3.12'
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importlib-resources==6.5.2 ; python_full_version < '3.10'
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iniconfig==2.1.0
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iniconfig==2.1.0 ; python_full_version < '3.10'
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iniconfig==2.3.0 ; python_full_version >= '3.10'
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inquirerpy==0.3.4
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isodate==0.7.2 ; python_full_version < '3.11'
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isort==6.1.0
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isort==6.1.0 ; python_full_version < '3.10'
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isort==7.0.0 ; python_full_version >= '3.10'
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jaraco-classes==3.4.0 ; platform_machine != 'ppc64le' and platform_machine != 's390x'
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jaraco-context==6.0.1 ; platform_machine != 'ppc64le' and platform_machine != 's390x'
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jaraco-functools==4.3.0 ; platform_machine != 'ppc64le' and platform_machine != 's390x'
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@@ -99,7 +103,7 @@ myst-parser==4.0.1 ; python_full_version >= '3.10'
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nh3==0.3.1
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numpy==2.0.2 ; python_full_version < '3.10'
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numpy==2.2.6 ; python_full_version == '3.10.*'
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numpy==2.3.3 ; python_full_version >= '3.11'
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numpy==2.3.4 ; python_full_version >= '3.11'
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onedatafilerestclient==21.2.5.2
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outcome==1.3.0.post0
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owlrl==6.0.2 ; python_full_version < '3.10'
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@@ -108,7 +112,8 @@ packaging==24.2 ; python_full_version < '3.10'
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packaging==25.0 ; python_full_version >= '3.10'
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pathspec==0.12.1
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pfzy==0.3.4
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pillow==11.3.0
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pillow==11.3.0 ; python_full_version < '3.10'
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pillow==12.0.0 ; python_full_version >= '3.10'
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pkce==1.0.3
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platformdirs==4.4.0 ; python_full_version < '3.10'
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platformdirs==4.5.0 ; python_full_version >= '3.10'
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@@ -119,8 +124,8 @@ port-for==1.0.0 ; python_full_version >= '3.10'
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prettytable==3.16.0
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prompt-toolkit==3.0.52
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propcache==0.4.1
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psutil==7.1.0 ; sys_platform != 'cygwin'
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psycopg==3.2.10
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psutil==7.1.2 ; sys_platform != 'cygwin'
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psycopg==3.2.12
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pycparser==2.23 ; (implementation_name != 'PyPy' and implementation_name != 'pypy' and os_name == 'nt') or (implementation_name != 'PyPy' and platform_python_implementation != 'PyPy')
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pyee==13.0.0
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pygithub==2.8.1
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@@ -147,27 +152,29 @@ pytest-shard==0.1.2
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python-dateutil==2.9.0.post0
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python-irodsclient==3.2.0
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python-slugify==8.0.4
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pytokens==0.1.10
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pytokens==0.2.0
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pywin32-ctypes==0.2.3 ; platform_machine != 'ppc64le' and platform_machine != 's390x' and sys_platform == 'win32'
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pyyaml==6.0.3
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rdflib==7.2.1
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readme-renderer==44.0
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referencing==0.36.2
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referencing==0.36.2 ; python_full_version < '3.10'
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referencing==0.37.0 ; python_full_version >= '3.10'
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requests==2.32.5
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requests-cache==1.2.1
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requests-toolbelt==1.0.0
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responses==0.25.8
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rfc3986==2.0.0
|
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rich==13.9.4
|
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rich-click==1.9.3
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rich-click==1.9.4
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roc-validator==0.4.2 ; python_full_version < '3.9.20'
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roc-validator==0.4.6 ; python_full_version >= '3.9.20' and python_full_version < '3.10'
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roc-validator==0.7.3 ; python_full_version >= '3.10'
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roman-numerals-py==3.1.0 ; python_full_version >= '3.11'
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rpds-py==0.27.1
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ruamel-yaml==0.18.15
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rpds-py==0.27.1 ; python_full_version < '3.10'
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rpds-py==0.28.0 ; python_full_version >= '3.10'
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ruamel-yaml==0.18.16
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ruamel-yaml-clib==0.2.14 ; python_full_version < '3.14' and platform_python_implementation == 'CPython'
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rucio-clients==38.3.0
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rucio-clients==38.4.0
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s3transfer==0.14.0
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schema-salad==8.9.20250723145140
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scipy==1.13.1 ; python_full_version < '3.10'
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@@ -176,7 +183,7 @@ scipy==1.16.2 ; python_full_version >= '3.11'
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secretstorage==3.3.3 ; python_full_version < '3.10' and platform_machine != 'ppc64le' and platform_machine != 's390x' and sys_platform == 'linux'
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secretstorage==3.4.0 ; python_full_version >= '3.10' and platform_machine != 'ppc64le' and platform_machine != 's390x' and sys_platform == 'linux'
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selenium==4.32.0 ; python_full_version < '3.10'
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selenium==4.36.0 ; python_full_version >= '3.10'
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selenium==4.38.0 ; python_full_version >= '3.10'
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seletools==1.5.0
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six==1.17.0
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sniffio==1.3.1
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@@ -197,18 +204,18 @@ statsd==4.0.1
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stevedore==5.5.0
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tabulate==0.9.0
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testfixtures==8.3.0 ; python_full_version < '3.11'
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testfixtures==9.1.0 ; python_full_version >= '3.11'
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testfixtures==9.2.0 ; python_full_version >= '3.11'
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text-unidecode==1.3
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tinydb==4.8.2
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toml==0.10.2
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tomli==2.3.0 ; python_full_version <= '3.11'
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total-perspective-vortex==3.1.1
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total-perspective-vortex==3.1.2
|
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trio==0.31.0
|
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trio-websocket==0.12.2
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tuspy==1.1.0
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twill==3.3.1
|
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twine==6.2.0
|
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types-cachetools==6.2.0.20250827
|
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types-cachetools==6.2.0.20251022
|
||||
types-requests==2.31.0.6 ; python_full_version < '3.10'
|
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types-requests==2.32.4.20250913 ; python_full_version >= '3.10'
|
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types-urllib3==1.26.25.14 ; python_full_version < '3.10'
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|
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@@ -4,4 +4,4 @@ flake8-bugbear==24.12.12
|
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mccabe==0.7.0
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pycodestyle==2.14.0
|
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pyflakes==3.4.0
|
||||
ruff==0.14.0
|
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ruff==0.14.2
|
||||
|
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@@ -5,17 +5,18 @@ adal==1.2.7
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aiobotocore==2.25.0
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aiofiles==25.1.0
|
||||
aiohappyeyeballs==2.6.1
|
||||
aiohttp==3.13.0
|
||||
aiohttp==3.13.1
|
||||
aioitertools==0.12.0
|
||||
aiosignal==1.4.0
|
||||
alembic==1.16.5
|
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alembic==1.16.5 ; python_full_version < '3.10'
|
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alembic==1.17.0 ; python_full_version >= '3.10'
|
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amqp==5.3.1
|
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annotated-types==0.7.0
|
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anyio==4.11.0
|
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apispec==6.8.4
|
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appdirs==1.4.4
|
||||
arcp==0.2.1
|
||||
argcomplete==3.6.2
|
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argcomplete==3.6.3
|
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async-timeout==5.0.1 ; python_full_version < '3.11'
|
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attmap==0.13.2
|
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attrs==25.4.0
|
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@@ -33,11 +34,11 @@ boto==2.49.0
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botocore==1.40.49
|
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bx-python==0.14.0
|
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cachecontrol==0.14.3
|
||||
cachetools==6.2.0
|
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cachetools==6.2.1
|
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celery==5.5.3
|
||||
certifi==2025.10.5
|
||||
cffi==2.0.0 ; implementation_name == 'pypy' or platform_python_implementation != 'PyPy'
|
||||
charset-normalizer==3.4.3
|
||||
charset-normalizer==3.4.4
|
||||
circus==0.19.0
|
||||
click==8.1.8 ; python_full_version < '3.10'
|
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click==8.3.0 ; python_full_version >= '3.10'
|
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@@ -49,7 +50,7 @@ cloudbridge==3.2.0
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colorama==0.4.6 ; sys_platform == 'win32'
|
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coloredlogs==15.0.1
|
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conda-package-streaming==0.12.0
|
||||
cryptography==46.0.2
|
||||
cryptography==46.0.3
|
||||
ct3==3.4.0
|
||||
cwl-upgrader==1.2.12
|
||||
cwl-utils==0.40
|
||||
@@ -75,23 +76,24 @@ frozenlist==1.8.0
|
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fs==2.4.16
|
||||
fsspec==2025.9.0
|
||||
future==1.0.0
|
||||
google-api-core==2.26.0
|
||||
google-api-core==2.27.0
|
||||
google-auth==2.41.1
|
||||
google-cloud-batch==0.17.37
|
||||
googleapis-common-protos==1.70.0
|
||||
google-cloud-batch==0.18.0
|
||||
googleapis-common-protos==1.71.0
|
||||
gravity==1.1.1
|
||||
greenlet==3.2.4 ; platform_machine == 'AMD64' or platform_machine == 'WIN32' or platform_machine == 'aarch64' or platform_machine == 'amd64' or platform_machine == 'ppc64le' or platform_machine == 'win32' or platform_machine == 'x86_64'
|
||||
grpcio==1.75.1
|
||||
grpcio-status==1.75.1
|
||||
grpcio==1.76.0
|
||||
grpcio-status==1.76.0
|
||||
gunicorn==23.0.0
|
||||
gxformat2==0.21.0
|
||||
h11==0.16.0
|
||||
h5grove==2.3.0
|
||||
h5py==3.14.0
|
||||
h5py==3.14.0 ; python_full_version < '3.10'
|
||||
h5py==3.15.1 ; python_full_version >= '3.10'
|
||||
httpcore==1.0.9
|
||||
httpx==0.28.1
|
||||
humanfriendly==10.0
|
||||
idna==3.10
|
||||
idna==3.11
|
||||
ijson==3.4.0.post0
|
||||
importlib-metadata==8.7.0 ; python_full_version < '3.10'
|
||||
importlib-resources==6.5.2 ; python_full_version < '3.12'
|
||||
@@ -106,7 +108,7 @@ jsonschema==4.25.1
|
||||
jsonschema-specifications==2025.9.1
|
||||
kombu==5.5.4
|
||||
lagom==2.7.7
|
||||
legacy-cgi==2.6.3 ; python_full_version >= '3.13'
|
||||
legacy-cgi==2.6.4 ; python_full_version >= '3.13'
|
||||
limits==4.2 ; python_full_version < '3.10'
|
||||
limits==5.6.0 ; python_full_version >= '3.10'
|
||||
lxml==6.0.2
|
||||
@@ -129,10 +131,10 @@ nodejs-wheel==22.20.0
|
||||
nodejs-wheel-binaries==22.20.0
|
||||
numpy==2.0.2 ; python_full_version < '3.10'
|
||||
numpy==2.2.6 ; python_full_version == '3.10.*'
|
||||
numpy==2.3.3 ; python_full_version >= '3.11'
|
||||
numpy==2.3.4 ; python_full_version >= '3.11'
|
||||
oauthlib==3.3.1
|
||||
openpyxl==3.1.5
|
||||
orjson==3.11.3
|
||||
orjson==3.11.4
|
||||
oyaml==1.0
|
||||
packaging==24.2 ; python_full_version < '3.10'
|
||||
packaging==25.0 ; python_full_version >= '3.10'
|
||||
@@ -141,19 +143,20 @@ parsley==1.3
|
||||
paste==3.10.1
|
||||
pastedeploy==3.1.0
|
||||
pebble==5.1.3
|
||||
pillow==11.3.0
|
||||
pillow==11.3.0 ; python_full_version < '3.10'
|
||||
pillow==12.0.0 ; python_full_version >= '3.10'
|
||||
prompt-toolkit==3.0.52
|
||||
propcache==0.4.1
|
||||
proto-plus==1.26.1
|
||||
protobuf==6.32.1
|
||||
protobuf==6.33.0
|
||||
prov==1.5.1
|
||||
psutil==7.1.0
|
||||
psutil==7.1.2
|
||||
pulsar-galaxy-lib==0.15.11
|
||||
pyasn1==0.6.1
|
||||
pyasn1-modules==0.4.2
|
||||
pycparser==2.23 ; (implementation_name != 'PyPy' and platform_python_implementation != 'PyPy') or (implementation_name == 'pypy' and platform_python_implementation == 'PyPy')
|
||||
pycryptodome==3.23.0
|
||||
pydantic==2.12.2
|
||||
pydantic==2.12.3
|
||||
pydantic-core==2.41.4
|
||||
pydantic-tes==0.2.0
|
||||
pydot==4.0.1
|
||||
@@ -177,9 +180,10 @@ pytz==2025.2
|
||||
pyyaml==6.0.3
|
||||
pyzmq==27.1.0
|
||||
rdflib==7.2.1
|
||||
referencing==0.36.2
|
||||
referencing==0.36.2 ; python_full_version < '3.10'
|
||||
referencing==0.37.0 ; python_full_version >= '3.10'
|
||||
refgenconf==0.12.2
|
||||
regex==2025.9.18
|
||||
regex==2025.10.23
|
||||
repoze-lru==0.7
|
||||
requests==2.32.5
|
||||
requests-oauthlib==2.0.0
|
||||
@@ -187,11 +191,12 @@ requests-toolbelt==1.0.0
|
||||
requests-unixsocket==0.4.1
|
||||
rich==13.9.4
|
||||
rich-argparse==1.7.1
|
||||
rocrate==0.14.0
|
||||
rocrate==0.14.2
|
||||
routes==2.5.1
|
||||
rpds-py==0.27.1
|
||||
rpds-py==0.27.1 ; python_full_version < '3.10'
|
||||
rpds-py==0.28.0 ; python_full_version >= '3.10'
|
||||
rsa==4.9.1
|
||||
ruamel-yaml==0.18.15
|
||||
ruamel-yaml==0.18.16
|
||||
ruamel-yaml-clib==0.2.14 ; python_full_version < '3.14' and platform_python_implementation == 'CPython'
|
||||
s3fs==2025.9.0
|
||||
schema-salad==8.9.20250723145140
|
||||
@@ -213,7 +218,7 @@ tenacity==9.1.2
|
||||
text-unidecode==1.3
|
||||
tifffile==2024.8.30 ; python_full_version < '3.10'
|
||||
tifffile==2025.5.10 ; python_full_version == '3.10.*'
|
||||
tifffile==2025.10.4 ; python_full_version >= '3.11'
|
||||
tifffile==2025.10.16 ; python_full_version >= '3.11'
|
||||
tinydb==4.8.2
|
||||
tomli==2.3.0 ; python_full_version < '3.11'
|
||||
tornado==6.5.2
|
||||
@@ -227,8 +232,8 @@ tzlocal==5.3.1
|
||||
ubiquerg==0.8.1
|
||||
urllib3==1.26.20 ; python_full_version < '3.10'
|
||||
urllib3==2.5.0 ; python_full_version >= '3.10'
|
||||
uvicorn==0.37.0
|
||||
uvloop==0.21.0
|
||||
uvicorn==0.38.0
|
||||
uvloop==0.22.1
|
||||
vine==5.1.0
|
||||
wcwidth==0.2.14
|
||||
webencodings==0.5.1
|
||||
|
||||
@@ -1,7 +1,7 @@
|
||||
# This file was autogenerated by uv via the following command:
|
||||
# uv export --frozen --no-annotate --no-hashes --only-group=test
|
||||
aiohappyeyeballs==2.6.1
|
||||
aiohttp==3.13.0
|
||||
aiohttp==3.13.1
|
||||
aiosignal==1.4.0
|
||||
anyio==4.11.0
|
||||
ase==3.26.0
|
||||
@@ -12,24 +12,26 @@ backports-asyncio-runner==1.2.0 ; python_full_version < '3.11'
|
||||
boto3==1.40.49
|
||||
botocore==1.40.49
|
||||
cachecontrol==0.14.3
|
||||
cachetools==6.2.0
|
||||
cachetools==6.2.1
|
||||
cattrs==25.3.0
|
||||
certifi==2025.10.5
|
||||
cffi==2.0.0 ; implementation_name != 'pypy' and os_name == 'nt'
|
||||
charset-normalizer==3.4.3
|
||||
charset-normalizer==3.4.4
|
||||
click==8.1.8 ; python_full_version < '3.10'
|
||||
click==8.3.0 ; python_full_version >= '3.10'
|
||||
colorama==0.4.6 ; sys_platform == 'win32'
|
||||
colorlog==6.9.0
|
||||
colorlog==6.10.1
|
||||
contourpy==1.3.0 ; python_full_version < '3.10'
|
||||
contourpy==1.3.2 ; python_full_version == '3.10.*'
|
||||
contourpy==1.3.3 ; python_full_version >= '3.11'
|
||||
coverage==7.10.7
|
||||
coverage==7.10.7 ; python_full_version < '3.10'
|
||||
coverage==7.11.0 ; python_full_version >= '3.10'
|
||||
cwltest==2.6.20250818005349
|
||||
cycler==0.12.1
|
||||
decorator==5.2.1
|
||||
defusedxml==0.7.1
|
||||
dogpile-cache==1.4.1
|
||||
dogpile-cache==1.4.1 ; python_full_version < '3.10'
|
||||
dogpile-cache==1.5.0 ; python_full_version >= '3.10'
|
||||
enum-tools==0.12.0 ; python_full_version >= '3.10'
|
||||
exceptiongroup==1.3.0 ; python_full_version < '3.11'
|
||||
filelock==3.19.1 ; python_full_version < '3.10'
|
||||
@@ -43,10 +45,11 @@ html5lib==1.1 ; python_full_version < '3.10'
|
||||
html5rdf==1.2.1 ; python_full_version >= '3.10'
|
||||
httpcore==1.0.9
|
||||
httpx==0.28.1
|
||||
idna==3.10
|
||||
idna==3.11
|
||||
importlib-metadata==8.7.0 ; python_full_version < '3.12'
|
||||
importlib-resources==6.5.2 ; python_full_version < '3.10'
|
||||
iniconfig==2.1.0
|
||||
iniconfig==2.1.0 ; python_full_version < '3.10'
|
||||
iniconfig==2.3.0 ; python_full_version >= '3.10'
|
||||
inquirerpy==0.3.4
|
||||
isodate==0.7.2 ; python_full_version < '3.11'
|
||||
jinja2==3.1.6
|
||||
@@ -72,7 +75,7 @@ mypy==1.18.2
|
||||
mypy-extensions==1.1.0
|
||||
numpy==2.0.2 ; python_full_version < '3.10'
|
||||
numpy==2.2.6 ; python_full_version == '3.10.*'
|
||||
numpy==2.3.3 ; python_full_version >= '3.11'
|
||||
numpy==2.3.4 ; python_full_version >= '3.11'
|
||||
onedatafilerestclient==21.2.5.2
|
||||
outcome==1.3.0.post0
|
||||
owlrl==6.0.2 ; python_full_version < '3.10'
|
||||
@@ -81,7 +84,8 @@ packaging==24.2 ; python_full_version < '3.10'
|
||||
packaging==25.0 ; python_full_version >= '3.10'
|
||||
pathspec==0.12.1
|
||||
pfzy==0.3.4
|
||||
pillow==11.3.0
|
||||
pillow==11.3.0 ; python_full_version < '3.10'
|
||||
pillow==12.0.0 ; python_full_version >= '3.10'
|
||||
pkce==1.0.3
|
||||
platformdirs==4.4.0 ; python_full_version < '3.10'
|
||||
platformdirs==4.5.0 ; python_full_version >= '3.10'
|
||||
@@ -92,8 +96,8 @@ port-for==1.0.0 ; python_full_version >= '3.10'
|
||||
prettytable==3.16.0
|
||||
prompt-toolkit==3.0.52
|
||||
propcache==0.4.1
|
||||
psutil==7.1.0 ; sys_platform != 'cygwin'
|
||||
psycopg==3.2.10
|
||||
psutil==7.1.2 ; sys_platform != 'cygwin'
|
||||
psycopg==3.2.12
|
||||
pycparser==2.23 ; implementation_name != 'PyPy' and implementation_name != 'pypy' and os_name == 'nt'
|
||||
pyee==13.0.0
|
||||
pygments==2.19.2
|
||||
@@ -118,26 +122,28 @@ python-irodsclient==3.2.0
|
||||
python-slugify==8.0.4
|
||||
pyyaml==6.0.3
|
||||
rdflib==7.2.1
|
||||
referencing==0.36.2
|
||||
referencing==0.36.2 ; python_full_version < '3.10'
|
||||
referencing==0.37.0 ; python_full_version >= '3.10'
|
||||
requests==2.32.5
|
||||
requests-cache==1.2.1
|
||||
responses==0.25.8
|
||||
rich==13.9.4
|
||||
rich-click==1.9.3
|
||||
rich-click==1.9.4
|
||||
roc-validator==0.4.2 ; python_full_version < '3.9.20'
|
||||
roc-validator==0.4.6 ; python_full_version >= '3.9.20' and python_full_version < '3.10'
|
||||
roc-validator==0.7.3 ; python_full_version >= '3.10'
|
||||
rpds-py==0.27.1
|
||||
ruamel-yaml==0.18.15
|
||||
rpds-py==0.27.1 ; python_full_version < '3.10'
|
||||
rpds-py==0.28.0 ; python_full_version >= '3.10'
|
||||
ruamel-yaml==0.18.16
|
||||
ruamel-yaml-clib==0.2.14 ; python_full_version < '3.14' and platform_python_implementation == 'CPython'
|
||||
rucio-clients==38.3.0
|
||||
rucio-clients==38.4.0
|
||||
s3transfer==0.14.0
|
||||
schema-salad==8.9.20250723145140
|
||||
scipy==1.13.1 ; python_full_version < '3.10'
|
||||
scipy==1.15.3 ; python_full_version == '3.10.*'
|
||||
scipy==1.16.2 ; python_full_version >= '3.11'
|
||||
selenium==4.32.0 ; python_full_version < '3.10'
|
||||
selenium==4.36.0 ; python_full_version >= '3.10'
|
||||
selenium==4.38.0 ; python_full_version >= '3.10'
|
||||
seletools==1.5.0
|
||||
six==1.17.0
|
||||
sniffio==1.3.1
|
||||
@@ -146,17 +152,17 @@ statsd==4.0.1
|
||||
stevedore==5.5.0
|
||||
tabulate==0.9.0
|
||||
testfixtures==8.3.0 ; python_full_version < '3.11'
|
||||
testfixtures==9.1.0 ; python_full_version >= '3.11'
|
||||
testfixtures==9.2.0 ; python_full_version >= '3.11'
|
||||
text-unidecode==1.3
|
||||
tinydb==4.8.2
|
||||
toml==0.10.2
|
||||
tomli==2.3.0 ; python_full_version <= '3.11'
|
||||
total-perspective-vortex==3.1.1
|
||||
total-perspective-vortex==3.1.2
|
||||
trio==0.31.0
|
||||
trio-websocket==0.12.2
|
||||
tuspy==1.1.0
|
||||
twill==3.3.1
|
||||
types-cachetools==6.2.0.20250827
|
||||
types-cachetools==6.2.0.20251022
|
||||
types-requests==2.31.0.6 ; python_full_version < '3.10'
|
||||
types-requests==2.32.4.20250913 ; python_full_version >= '3.10'
|
||||
types-urllib3==1.26.25.14 ; python_full_version < '3.10'
|
||||
|
||||
@@ -1,26 +1,26 @@
|
||||
# This file was autogenerated by uv via the following command:
|
||||
# uv export --frozen --no-annotate --no-hashes --only-group=typecheck
|
||||
annotated-types==0.7.0
|
||||
boto3-stubs==1.40.50
|
||||
botocore-stubs==1.40.33
|
||||
boto3-stubs==1.40.59
|
||||
botocore-stubs==1.40.59
|
||||
cffi==2.0.0 ; platform_python_implementation != 'PyPy'
|
||||
cryptography==46.0.2
|
||||
cryptography==46.0.3
|
||||
lxml-stubs==0.5.1
|
||||
mypy==1.18.2
|
||||
mypy-boto3-s3==1.40.26
|
||||
mypy-extensions==1.1.0
|
||||
pathspec==0.12.1
|
||||
pycparser==2.23 ; implementation_name != 'PyPy' and platform_python_implementation != 'PyPy'
|
||||
pydantic==2.12.2
|
||||
pydantic==2.12.3
|
||||
pydantic-core==2.41.4
|
||||
tomli==2.3.0 ; python_full_version < '3.11'
|
||||
types-awscrt==0.27.6
|
||||
types-awscrt==0.28.2
|
||||
types-bleach==6.2.0.20250809
|
||||
types-boto==2.49.18.20241019
|
||||
types-contextvars==2.4.7.3
|
||||
types-dataclasses==0.6.6
|
||||
types-docutils==0.22.2.20251006
|
||||
types-html5lib==1.1.11.20250917
|
||||
types-html5lib==1.1.11.20251014
|
||||
types-markdown==3.9.0.20250906
|
||||
types-paramiko==4.0.0.20250822
|
||||
types-python-dateutil==2.9.0.20251008
|
||||
@@ -28,7 +28,7 @@ types-python-slugify==8.0.2.20240310
|
||||
types-pyyaml==6.0.12.20250915
|
||||
types-requests==2.31.0.6 ; python_full_version < '3.10'
|
||||
types-requests==2.32.4.20250913 ; python_full_version >= '3.10'
|
||||
types-s3transfer==0.13.1
|
||||
types-s3transfer==0.14.0
|
||||
types-setuptools==80.9.0.20250822
|
||||
types-six==1.17.0.20251009
|
||||
types-urllib3==1.26.25.14 ; python_full_version < '3.10'
|
||||
|
||||
@@ -42,7 +42,7 @@ install_requires =
|
||||
galaxy-web-apps
|
||||
a2wsgi
|
||||
alembic
|
||||
fastapi>=0.101.0
|
||||
fastapi>=0.111.0,!=0.119.*,!=0.120.0
|
||||
Mako
|
||||
MarkupSafe
|
||||
mercurial>=6.8.2
|
||||
|
||||
@@ -43,7 +43,7 @@ install_requires =
|
||||
apispec
|
||||
Babel
|
||||
CT3>=3.3.3
|
||||
fastapi>=0.101.0
|
||||
fastapi>=0.111.0,!=0.119.*,!=0.120.0
|
||||
gunicorn
|
||||
httpx
|
||||
gxformat2
|
||||
|
||||
+1
-1
@@ -37,7 +37,7 @@ dependencies = [
|
||||
"docutils!=0.17,!=0.17.1",
|
||||
"dparse",
|
||||
"edam-ontology",
|
||||
"fastapi-slim>=0.111.0",
|
||||
"fastapi-slim>=0.111.0,!=0.119.*,!=0.120.0", # https://github.com/fastapi/fastapi/pull/13918
|
||||
"fissix",
|
||||
"fs",
|
||||
"future>=1.0.0", # Python 3.12 support
|
||||
|
||||
Reference in New Issue
Block a user