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Add basic VCF4.1 support.

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This commit is contained in:
Daniel Blankenberg
2011-08-30 16:56:52 -04:00
parent 2215c4cf17
commit 98c4351f28
1 changed files with 4 additions and 1 deletions
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lib/galaxy_utils/sequence/vcf.py
+4 -1
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@@ -55,9 +55,12 @@ class VariantCall40( VariantCall33 ):
def __init__( self, vcf_line, metadata, sample_names ):
VariantCall33.__init__( self, vcf_line, metadata, sample_names)
class VariantCall41( VariantCall40 ):
version = 'VCFv4.1'
#VCF Format version lookup dict
VCF_FORMATS = {}
for format in [ VariantCall33, VariantCall40 ]:
for format in [ VariantCall33, VariantCall40, VariantCall41 ]:
VCF_FORMATS[format.version] = format
class Reader( object ):