Apply suggestions from code review

Co-Authored-By: Marius van den Beek <m.vandenbeek@gmail.com>
This commit is contained in:
John Chilton
2019-08-22 15:45:25 -04:00
co-authored by Marius van den Beek
parent 55b384cc50
commit 956bf8ab93
4 changed files with 9 additions and 4 deletions
+3 -1
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@@ -22,7 +22,9 @@ from bx.seq.twobit import TWOBIT_MAGIC_NUMBER, TWOBIT_MAGIC_NUMBER_SWAP, TWOBIT_
from galaxy import util
from galaxy.datatypes import metadata
from galaxy.datatypes.data import DatatypeValidation, get_file_peek
from galaxy.datatypes.data import (
DatatypeValidation,
get_file_peek,
from galaxy.datatypes.metadata import DictParameter, ListParameter, MetadataElement, MetadataParameter
from galaxy.util import nice_size, sqlite
from galaxy.util.checkers import is_bz2, is_gzip
+4 -1
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@@ -20,7 +20,10 @@ from markupsafe import escape
from six.moves.urllib.parse import quote_plus
from galaxy.datatypes import metadata
from galaxy.datatypes.data import DatatypeValidation, Text
from galaxy.datatypes.data import (
DatatypeValidation,
Text,
)
from galaxy.datatypes.metadata import MetadataElement
from galaxy.datatypes.sniff import build_sniff_from_prefix
from galaxy.datatypes.tabular import Tabular
+1 -1
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@@ -286,7 +286,7 @@ class Interval(Tabular):
try:
next(reader)
except ParseError as e:
return DatatypeValidation.invalid(str(e))
return DatatypeValidation.invalid(unicodify(e))
except StopIteration:
return DatatypeValidation.valid()
+1 -1
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@@ -70,7 +70,7 @@ class EmailAction(DefaultJobAction):
class ValidateOutputsAction(DefaultJobAction):
"""
This action sends an email to the galaxy user responsible for a job.
This action validates the produced outputs against the expected datatype.
"""
name = "ValidateOutputsAction"
verbose_name = "Validate Tool Outputs"