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synced 2026-09-24 16:30:27 +08:00
Update tar_to_directory dependency
Should fix:
```
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/usr/local/lib/python3.7/site-packages/galaxy/util/compression_utils.py", line 114, in extract
common_prefix_dir = self.common_prefix_dir
File "/usr/local/lib/python3.7/site-packages/galaxy/util/compression_utils.py", line 103, in common_prefix_dir
if len(common_prefix) >= 1 and not common_prefix.endswith(os.sep) and self.isdir(self.getmember(common_prefix)) \
File "/usr/local/lib/python3.7/site-packages/galaxy/util/compression_utils.py", line 186, in isdir
return getattr(self, 'isdir_%s' % self.type)(member)
File "/usr/local/lib/python3.7/site-packages/galaxy/util/compression_utils.py", line 189, in isdir_tar
return member.isdir()
AttributeError: 'NoneType' object has no attribute 'isdir'
```
seen on usegalaxy.eu with https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE176031&format=file
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@@ -1,7 +1,7 @@
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<tool id="CONVERTER_tar_to_directory" name="Convert tar to directory" version="1.0.1" profile="17.05">
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<!-- Don't use tar directly so we can verify safety of results - tar -xzf '$input1'; -->
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<requirements>
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<requirement type="package" version="19.9">galaxy-util</requirement>
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<requirement type="package" version="23.1">galaxy-util</requirement>
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</requirements>
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<command>
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mkdir '$output1.files_path';
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