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Fix R env handling in fabric_util broken with 864f8f4.

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Thanks BjoernGruening.
This commit is contained in:
John Chilton
2014-01-14 16:02:11 -06:00
parent 7cff1c23b5
commit 9098a88f3d
1 changed files with 1 additions and 1 deletions
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lib/tool_shed/galaxy_install/tool_dependencies/fabric_util.py
+1 -1
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@@ -409,7 +409,7 @@ def install_and_build_package( app, tool_dependency, actions_dict ):
with lcd( current_dir ):
with settings( warn_only=True ):
for tarball_name in tarball_names:
cmd = '''PATH=$PATH:$R_HOME/bin; export PATH; R_LIBS=$INSTALL_DIR; export R_LIBS; &&
cmd = '''PATH=$PATH:$R_HOME/bin; export PATH; R_LIBS=$INSTALL_DIR; export R_LIBS;
Rscript -e "install.packages(c('%s'),lib='$INSTALL_DIR', repos=NULL, dependencies=FALSE)"''' % ( str( tarball_name ) )
cmd = install_environment.build_command( td_common_util.evaluate_template( cmd, install_dir ) )
return_code = handle_command( app, tool_dependency, install_dir, cmd )