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Add direct connection to ucsc archaea browser. We should no longer need the proxy.

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This commit is contained in:
Daniel Blankenberg
2007-07-03 17:15:06 +00:00
parent 9de6c8e257
commit 8e9b070fac
2 changed files with 28 additions and 2 deletions
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tool_conf.xml.sample
+3 -2
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@@ -4,9 +4,10 @@
<tool file="data_source/upload.xml"/>
<tool file="data_source/ucsc_tablebrowser.xml" />
<tool file="data_source/ucsc_tablebrowser_test.xml" />
<tool file="data_source/ucsc_tablebrowser_archaea.xml" />
<!-- <tool file="data_source/ucsc_proxy.xml"/>
<tool file="data_source/ucsc_testproxy.xml" /> -->
<tool file="data_source/ucsc_archaea.xml" />
<tool file="data_source/ucsc_testproxy.xml" />
<tool file="data_source/ucsc_archaea.xml" /> -->
<tool file="data_source/microbial_import.xml" />
<tool file="data_source/biomart.xml" />
<tool file="data_source/biomart_test.xml" />
tools/data_source/ucsc_tablebrowser_archaea.xml
+25
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@@ -0,0 +1,25 @@
<?xml version="1.0"?>
<tool name="UCSC Archaea" id="ucsc_table_direct_archaea1">
<description>table browser</description>
<command interpreter="python2.4">ucsc_tablebrowser.py $output</command>
<inputs action="http://archaea.ucsc.edu/cgi-bin/hgTables" check_values="false" method="get">
<display>go to UCSC Table Browser $GALAXY_URL</display>
<param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
<param name="tool_id" type="hidden" value="ucsc_table_direct_archaea1" />
<param name="sendToGalaxy" type="hidden" value="1" />
<param name="hgta_compressType" type="hidden" value="none" />
<param name="hgta_outputType" type="hidden" value="bed" />
</inputs>
<code file="ucsc_tablebrowser_code.py"/>
<outputs>
<data name="output" format="bed" />
</outputs>
<options sanitize="False" refresh="True"/>
</tool>