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Fix for fastq filter tests of paired_end boolean.

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Daniel Blankenberg
2012-09-14 15:50:38 -04:00
parent cb6fc57be9
commit 8d4997c1bb
1 changed files with 11 additions and 11 deletions
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tools/fastq/fastq_filter.xml
+11 -11
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@@ -111,7 +111,7 @@ ret_val = fastq_read_pass_filter( fastq_read )
<param name="min_quality" value="0"/>
<param name="max_quality" value="0"/>
<param name="max_num_deviants" value="0"/>
<param name="paired_end" value="single_end"/>
<param name="paired_end" value="False"/>
<param name="base_offset_type" value="offsets_absolute"/>
<param name="left_column_offset" value="0"/>
<param name="right_column_offset" value="0"/>
@@ -127,7 +127,7 @@ ret_val = fastq_read_pass_filter( fastq_read )
<param name="min_quality" value="-5"/>
<param name="max_quality" value="0"/>
<param name="max_num_deviants" value="0"/>
<param name="paired_end" value="single_end"/>
<param name="paired_end" value="False"/>
<param name="base_offset_type" value="offsets_absolute"/>
<param name="left_column_offset" value="0"/>
<param name="right_column_offset" value="0"/>
@@ -144,7 +144,7 @@ ret_val = fastq_read_pass_filter( fastq_read )
<param name="min_quality" value="0"/>
<param name="max_quality" value="0"/>
<param name="max_num_deviants" value="0"/>
<param name="paired_end" value="single_end"/>
<param name="paired_end" value="False"/>
<param name="base_offset_type" value="offsets_absolute"/>
<param name="left_column_offset" value="0"/>
<param name="right_column_offset" value="0"/>
@@ -161,7 +161,7 @@ ret_val = fastq_read_pass_filter( fastq_read )
<param name="min_quality" value="1"/>
<param name="max_quality" value="0"/>
<param name="max_num_deviants" value="0"/>
<param name="paired_end" value="single_end"/>
<param name="paired_end" value="False"/>
<param name="base_offset_type" value="offsets_absolute"/>
<param name="left_column_offset" value="0"/>
<param name="right_column_offset" value="0"/>
@@ -177,7 +177,7 @@ ret_val = fastq_read_pass_filter( fastq_read )
<param name="min_quality" value="-4"/>
<param name="max_quality" value="0"/>
<param name="max_num_deviants" value="0"/>
<param name="paired_end" value="single_end"/>
<param name="paired_end" value="False"/>
<param name="base_offset_type" value="offsets_absolute"/>
<param name="left_column_offset" value="0"/>
<param name="right_column_offset" value="0"/>
@@ -194,7 +194,7 @@ ret_val = fastq_read_pass_filter( fastq_read )
<param name="min_quality" value="1"/>
<param name="max_quality" value="0"/>
<param name="max_num_deviants" value="1"/>
<param name="paired_end" value="single_end"/>
<param name="paired_end" value="False"/>
<param name="base_offset_type" value="offsets_absolute"/>
<param name="left_column_offset" value="0"/>
<param name="right_column_offset" value="0"/>
@@ -210,7 +210,7 @@ ret_val = fastq_read_pass_filter( fastq_read )
<param name="min_quality" value="-5"/>
<param name="max_quality" value="61"/>
<param name="max_num_deviants" value="1"/>
<param name="paired_end" value="single_end"/>
<param name="paired_end" value="False"/>
<param name="base_offset_type" value="offsets_absolute"/>
<param name="left_column_offset" value="0"/>
<param name="right_column_offset" value="0"/>
@@ -227,7 +227,7 @@ ret_val = fastq_read_pass_filter( fastq_read )
<param name="min_quality" value="0"/>
<param name="max_quality" value="0"/>
<param name="max_num_deviants" value="0"/>
<param name="paired_end" value="single_end"/>
<param name="paired_end" value="False"/>
<param name="base_offset_type" value="offsets_absolute"/>
<param name="left_column_offset" value="1"/>
<param name="right_column_offset" value="1"/>
@@ -243,7 +243,7 @@ ret_val = fastq_read_pass_filter( fastq_read )
<param name="min_quality" value="0"/>
<param name="max_quality" value="0"/>
<param name="max_num_deviants" value="0"/>
<param name="paired_end" value="single_end"/>
<param name="paired_end" value="False"/>
<param name="base_offset_type" value="offsets_absolute"/>
<param name="left_column_offset" value="1"/>
<param name="right_column_offset" value="1"/>
@@ -260,7 +260,7 @@ ret_val = fastq_read_pass_filter( fastq_read )
<param name="min_quality" value="0"/>
<param name="max_quality" value="0"/>
<param name="max_num_deviants" value="0"/>
<param name="paired_end" value="single_end"/>
<param name="paired_end" value="False"/>
<param name="base_offset_type" value="offsets_percent"/>
<param name="left_column_offset" value="1.075"/>
<param name="right_column_offset" value="1.075"/>
@@ -276,7 +276,7 @@ ret_val = fastq_read_pass_filter( fastq_read )
<param name="min_quality" value="0"/>
<param name="max_quality" value="0"/>
<param name="max_num_deviants" value="0"/>
<param name="paired_end" value="single_end"/>
<param name="paired_end" value="True"/>
<param name="base_offset_type" value="offsets_percent"/>
<param name="left_column_offset" value="1"/>
<param name="right_column_offset" value="1"/>