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Open next-stable for upcoming June release.

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This commit is contained in:
Nate Coraor
2014-05-19 15:55:21 -04:00
parent 7af851ba58 0c1efa4831
commit 8bcf293eff
701 changed files with 44663 additions and 34879 deletions
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.hgtags
+1
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@@ -6,3 +6,4 @@ a4113cc1cb5eaa68091c9a73375f00555b66dd11 release_2013.01.13
1ae95b3aa98d1ccf15b243ac3ce6a895eb7efc53 release_2013.08.12
26f58e05aa1068761660681583821e21e6cbf7ab release_2013.11.04
5e605ed6069fe4c5ca9875e95e91b2713499e8ca release_2014.02.10
9e53251b0b7e93b9563008a2b112f2e815a04bbc release_2014.04.14
config/plugins/visualizations/charts/static/app.css
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@@ -0,0 +1,67 @@
.charts-grid .item {
padding: 5px;
margin: 5px;
float: left;
cursor: pointer;
border-radius:5px
}
.charts-grid .current {
border-color:#66afe9;
background-color:#EEEEFF;
outline:0;
-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6);
box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6);
}
.charts-grid .image {
padding: 10px;
width: 100px;
}
.charts-grid .title {
text-align: center;
font-size: 0.9em;
word-wrap: break-work;
font-weight: bold;
width: 100px;
}
.charts-grid .header {
font-size: 0.9em;
font-weight: bold;
}
.charts-viewport {
height: inherit;
min-height: 50px;
}
.charts-viewport .info {
position: absolute;
margin: 10px 20px 50px 10px;
}
.charts-viewport .text {
position: relative;
margin-left: 5px;
top: -1px;
font-size: 1.0em;
}
.charts-viewport .icon {
font-size: 1.2em;
display: inline-block;
}
.charts-viewport .charts-viewport-container {
float: left;
display: block;
height: 100%;
}
.charts-viewport .charts-viewport-canvas {
display: block;
width:100%;
height: inherit;
}
config/plugins/visualizations/charts/static/app.js
+1 -1
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@@ -51,7 +51,7 @@ return Backbone.View.extend(
// append views
this.$el.append(this.viewer_view.$el);
this.$el.append(this.editor_view.$el);
// pick start screen
if (!this.storage.load()) {
// show editor
config/plugins/visualizations/charts/static/build-app.js
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config/plugins/visualizations/charts/static/charts/bardiagram/config.js
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@@ -1,7 +0,0 @@
define(['plugin/charts/_nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Bar diagram',
});
});
config/plugins/visualizations/charts/static/charts/heatmap/config.js
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define([], function() {
return {
title : 'Heatmap',
category : 'Data processing (requires \'charts\' tool from Toolshed)',
library : '',
tag : 'div',
use_panels : true,
execute : 'heatmap',
// columns
columns : {
row_label : {
title : 'Row labels',
is_label : true
},
col_label : {
title : 'Column labels',
is_label : true
},
value : {
title : 'Observations'
},
},
// settings
settings: {
/*limit : {
title : 'Limit',
info : 'Which to ranked clusters would you like to visualize',
type : 'select',
init : '20',
data : [
{
label : '20',
value : '20'
},
{
label : '30',
value : '30'
},
{
label : '40',
value : '40'
},
{
label : '50',
value : '50'
},
{
label : '60',
value : '60'
},
{
label : '70',
value : '70'
},
{
label : '80',
value : '80'
},
{
label : '90',
value : '90'
},
{
label : '100',
value : '100'
}
]
},*/
color_set : {
title : 'Color scheme',
info : 'Select a color scheme for your heatmap',
type : 'select',
init : 'ocean',
data : [
{
label : 'Cold-to-Hot',
value : 'hot'
},
{
label : 'Cool',
value : 'cool'
},
{
label : 'Copper',
value : 'copper'
},
{
label : 'Gebco',
value : 'gebco'
},
{
label : 'Globe',
value : 'globe'
},
{
label : 'Gray scale',
value : 'gray'
},
{
label : 'Haxby',
value : 'haxby'
},
{
label : 'Jet',
value : 'jet'
},
{
label : 'No-Green',
value : 'no_green'
},
{
label : 'Ocean',
value : 'ocean'
},
{
label : 'Polar',
value : 'polar'
},
{
label : 'Rainbow',
value : 'rainbow'
},
{
label : 'Red-to-Green',
value : 'redgreen'
},
{
label : 'Red-to-green (saturated)',
value : 'red2green'
},
{
label : 'Relief',
value : 'relief'
},
{
label : 'Seismograph',
value : 'seis'
},
{
label : 'Sealand',
value : 'sealand'
},
{
label : 'Split',
value : 'split'
},
{
label : 'Topo',
value : 'topo'
},
{
label : 'Wysiwyg',
value : 'wysiwyg'
}
]
},
sorting : {
title : 'Sorting',
info : 'How should the columns be clustered?',
type : 'select',
init : 'hclust',
data : [
{
label : 'Read from dataset',
value : 'hclust'
},
{
label : 'Sort column and row labels',
value : 'byboth'
},
{
label : 'Sort column labels',
value : 'bycolumns'
},
{
label : 'Sort by rows',
value : 'byrow'
}
]
}
},
// menu definition
menu : function() {
return {
color_set : this.settings.color_set
}
}
};
});
config/plugins/visualizations/charts/static/charts/heatmap/heatmap-parameters.js
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// dependencies
define(['utils/utils', 'plugin/charts/heatmap/heatmap-plugin'], function(Utils, HeatmapPlugin) {
// color palettes
var colorSets = {
seis: ['#AA0000', '#D00000', '#F70000', '#FF1D00', '#FF4400', '#FF6A00', '#FF9000', '#FFB700', '#FFDD00', '#FFFF00', '#FFFF00', '#FFFF00', '#BDFF0C', '#73FF1A', '#3FFA36', '#16F45A', '#00D08B', '#0087CD', '#0048FA', '#0024E3'],
sealand: ['#8C66FF', '#6A66FF', '#6684FF', '#66A7FF', '#66CAFF', '#66ECFF', '#66FFF0', '#66FFCE', '#66FFAB', '#66FF88', '#66FF66', '#88FF66', '#ABFF66', '#CEFF66', '#FFEEA6', '#FFD3A6', '#FFB8A6', '#FFAAB0', '#FFB5CB', '#FFC0E1'],
redgreen: ['#005824', '#1A693B', '#347B53', '#4F8D6B', '#699F83', '#83B09B', '#9EC2B3', '#B8D4CB', '#D2E6E3', '#EDF8FB', '#FFFFFF', '#F1EEF6', '#E6D3E1','#DBB9CD', '#D19EB9', '#C684A4', '#BB6990', '#B14F7C', '#A63467', '#9B1A53', '#91003F'],
ocean: ['#000000', '#000209', '#000413', '#00061E', '#000728', '#000932', '#002650', '#00426E', '#005E8C', '#007AAA', '#0096C8', '#22A9C2', '#45BCBB', '#67CFB5', '#8AE2AE', '#ACF6A8', '#BCF8B9', '#CBF9CA', '#DBFBDC', '#EBFDED'],
cool: ['#00FFFF', '#0DF2FF', '#19E6FF', '#26D9FF', '#33CCFF', '#3FBFFF', '#4CB3FF', '#59A6FF', '#6699FF', '#738CFF', '#7F7FFF', '#8C73FF', '#9966FF', '#A659FF', '#B24DFF', '#BF3FFF', '#CC33FF', '#D926FF', '#E619FF', '#F20DFF'],
copper: ['#000000', '#100906', '#1F130D', '#301E13', '#40281A', '#50321F', '#603C26', '#70462D', '#805033', '#905A3A', '#A06440', '#B06E46', '#C0784D', '#D08253', '#E08C5A', '#F09660', '#FFA066', '#FFAA6D', '#FFB473', '#FFBE7A'],
gebco: ['#00F0FF', '#00F0FF', '#00F0FF', '#23FFFF', '#23FFFF', '#23FFFF', '#5AFFFF', '#5AFFFF', '#5AFFFF', '#8CFFE6', '#8CFFE6', '#8CFFE6', '#A5FFD7', '#A5FFD7', '#A5FFD7', '#C3FFD7', '#C3FFD7', '#C3FFD7', '#D2FFD7', '#E6FFF0'],
globe: ['#9900FF', '#9900FF', '#7722FF', '#5544FF', '#3366FF', '#1188FF', '#1BA4FF', '#51BAFF', '#86D0FF', '#BCE6FF', '#336600', '#F3CA89', '#D9A627', '#A49019', '#9F7B0D', '#996600', '#B27676', '#C2B0B0', '#E5E5E5', '#FFFFFF'],
gray: ['#000000', '#0D0D0D', '#191919', '#262626', '#333333', '#3F3F3F', '#4C4C4C', '#595959', '#666666', '#737373', '#7F7F7F', '#8C8C8C', '#999999', '#A6A6A6', '#B2B2B2', '#BFBFBF', '#CCCCCC', '#D9D9D9', '#E6E6E6', '#F2F2F2'],
haxby: ['#090079', '#280096', '#0009C8', '#0019D4', '#1A66F0', '#19AFFF', '#32BEFF', '#61E1F0', '#6AECE1', '#8AECAE', '#CDFFA2', '#DFF68D', '#F8D768', '#FFBD57', '#F4754B', '#FF5A5A', '#FF7C7C', '#F6B3AE', '#FFC4C4', '#FFECEC'],
hot: ['#000000', '#220000', '#440000', '#660000', '#880000', '#AA0000', '#CC0000', '#EE0000', '#FF1100', '#FF3300', '#FF5500', '#FF7700', '#FF9900', '#FFBB00', '#FFDD00', '#FFFF00', '#FFFF33', '#FFFF66', '#FFFF99', '#FFFFCC'],
jet: ['#00007F', '#0000B2', '#0000E5', '#0019FF', '#004DFF', '#007FFF', '#00B2FF', '#00E5FF', '#FFFFF2', '#FFFFD9', '#FFFFBF', '#FFFFA5', '#FFFF8C', '#FFE500', '#FFB300', '#FF7F00', '#FF4C00', '#FF1900', '#E50000', '#B20000'],
no_green: ['#1F60FF', '#1F60FF', '#1F9FFF', '#1FBFFF', '#00CFFF', '#2AFFFF', '#2AFFFF', '#55FFFF', '#7FFFFF', '#AAFFFF', '#FFFF54', '#FFFF54', '#FFF000', '#FFBF00', '#FFA800', '#FF8A00', '#FF8A00', '#FF7000', '#FF4D00', '#FF0000'],
polar: ['#0000FF', '#1919FF', '#3333FF', '#4C4CFF', '#6666FF', '#7F7FFF', '#9999FF', '#B2B2FF', '#CCCCFF', '#E6E6FF', '#FFFFFF', '#FFE5E5', '#FFCCCC', '#FFB2B2', '#FF9999', '#FF7F7F', '#FF6666', '#FF4C4C', '#FF3333', '#FF1A1A'],
rainbow: ['#FF00FF', '#BF00FF', '#7F00FF', '#3F00FF', '#0000FF', '#003FFF', '#007FFF', '#00BFFF', '#00FFFF', '#00FFBF', '#00FF7F', '#00FF3F', '#00FF00', '#3FFF00', '#7FFF00', '#BFFF00', '#FFFF00', '#FFBF00', '#FF7F00', '#FF3F00'],
red2green: ['#FF0000', '#FF1919', '#FF3333', '#FF4C4C', '#FF6666', '#FF7F7F', '#FF9999', '#FFB2B2', '#FFCCCC', '#FFE6E6', '#FFFFFF', '#E5FFE5', '#CCFFCC', '#B2FFB2', '#99FF99', '#7FFF7F', '#66FF66', '#4CFF4C', '#33FF33', '#1AFF1A'],
relief: ['#000000', '#000413', '#000728', '#002650', '#005E8C', '#0096C8', '#45BCBB', '#8AE2AE', '#BCF8B9', '#DBFBDC', '#467832', '#887438', '#B19D48', '#DBC758', '#FAE769', '#FAEB7E', '#FCED93', '#FCF1A7', '#FCF6C1', '#FDFAE0'],
split: ['#7F7FFF', '#6666E6', '#4D4DCC', '#3333B3', '#1A1A99', '#00007F', '#000066', '#00004D', '#000033', '#00001A', '#000000', '#1A0000', '#330000', '#4D0000', '#660000', '#7F0000', '#991A1A', '#B33333', '#CC4D4D', '#E66666'],
topo: ['#C977D9', '#A18AE6', '#8AA2E6', '#8BD1E7', '#8AF3CF', '#85F38E', '#BDF385', '#EDE485', '#F0B086', '#DE9F8B', '#74A3B3', '#99CC70', '#DCD68E', '#EDDFAD', '#F7E8CA', '#FFF9F3', '#FFF9F6', '#FFFBF9', '#FFFCFA', '#FFFEFD'],
wysiwyg: ['#3F003F', '#3F003F', '#3F00BF', '#003FFF', '#00A0FF', '#3FBFFF', '#3FBFFF', '#40E0FF', '#3FFFBF', '#3FFF3F', '#7FFF3F', '#BFFF3F', '#BFFF3F', '#FFE040', '#FFE040', '#FF6040', '#FF1F40', '#FF60C0', '#FFA0FF', '#FFA0FF']
}
// return
return {
colorSets: colorSets
}
});
config/plugins/visualizations/charts/static/charts/heatmap/heatmap-plugin.js
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// dependencies
define(['utils/utils'],
function(Utils) {
// widget
return Backbone.View.extend(
{
// number of columns and rows
colNumber: 0,
rowNumber: 0,
// indices
rowIndex: [],
colIndex: [],
// labels
rowLabel: [],
colLabel: [],
// cell size
cellSize: 0,
// font size
fontSize: 0,
// color buckets
nColors: 0,
// margins as cells
margin : {
top : 5,
right : 5,
bottom : 5,
left : 5
},
// default settings
optionsDefault: {
title : '',
pace : 1000,
},
// initialize
initialize: function(options) {
// link this
var self = this;
// load options
this.options = Utils.merge(options, this.optionsDefault)
// check requirements
if (!this.options.data || !this.options.div || !this.options.colors) {
console.debug('FAILED - HeatMapPlugin::initialize() - Parameters (container and/or data and/or colors) missing.');
return;
}
// link data
this.data = this.options.data;
// set element
this.setElement(this.options.div);
//
// data indexing
//
// labels (in alphabetical order)
this.rowLabel = [];
this.colLabel = [];
// index (order from original dataset)
this.rowIndex = [];
this.colIndex = [];
// unique keys (key indices are unique per label and indicate the labels rank in the alphabetical sorting)
this.colRank = {};
this.rowRank = {};
//
// identify and parse labels
//
for (var i in this.data) {
var cell = this.data[i];
// add label to index list
var col_label = cell.col_label;
if (this.colRank[col_label] === undefined) {
this.colRank[col_label] = true;
this.colLabel.push(col_label);
this.colIndex.push(col_label);
}
var row_label = cell.row_label;
if (this.rowRank[row_label] === undefined) {
this.rowRank[row_label] = true;
this.rowLabel.push(row_label);
this.rowIndex.push(row_label);
}
}
//
// sort labels and update rank dictionary
//
// set sizes
this.rowNumber = this.rowLabel.length
this.colNumber = this.colLabel.length
// sort labels alphabetical
this.rowLabel.sort();
this.colLabel.sort();
// generate sorted key list for rows
for (var i in this.rowLabel) {
var row_label = this.rowLabel[i];
var row = parseInt(i);
this.rowRank[row_label] = row;
}
// generate sorted key list for columns
for (var i in this.colLabel) {
var col_label = this.colLabel[i];
var col = parseInt(i);
this.colRank[col_label] = col;
}
//
// parse indexing from rank dictionary to cells
//
// min/max
this.max = undefined;
this.min = undefined
// add indices to data
for (var i in this.data) {
// get cell data
var cell = this.data[i];
// add rank
cell.col = this.colRank[cell.col_label];
cell.row = this.rowRank[cell.row_label];
// identify max/min values
if (this.min == undefined || this.min > cell.value) {
this.min = cell.value;
}
if (this.max == undefined || this.max < cell.value) {
this.max = cell.value;
}
}
//
// translate original create cluster from order in original data
//
// generate sorted key list for columns
for (var i in this.colIndex) {
this.colIndex[i] = this.colRank[this.colIndex[i]];
}
// generate sorted key list for columns
for (var i in this.rowIndex) {
this.rowIndex[i] = this.rowRank[this.rowIndex[i]];
}
// middle
this.mid = (this.max + this.min) / 2;
//
// set colors
//
// identify buckets
this.nColors = this.options.colors.length;
// color scale
this.colorScale = d3.scale.quantile()
.domain([this.min, this.mid, this.max])
.range(this.options.colors);
//
// add ui elements
//
// create tooltip
this.$tooltip = $(this._templateTooltip());
this.$el.append(this.$tooltip);
//
// finally draw the heatmap
//
this._build();
// catch window resize event
$(window).resize(function () {
self._build();
});
},
_build: function() {
// link this
var self = this;
// container (full draw area)
this.widthContainer = this.$el.width();
this.heightContainer = this.$el.height();
// get grid dimensions
this.width = this.widthContainer;
this.height = this.heightContainer;
// calculate cell size
this.cellSize = Math.min(((this.height) / (this.rowNumber + this.margin.top + this.margin.bottom)),
(this.width / (this.colNumber + this.margin.left + this.margin.right)));
// set font size
this.fontSize = Math.min(this.cellSize, 16);
// set width/height for plugin
this.width = this.cellSize * this.colNumber;
this.height = this.cellSize * this.rowNumber;
// get dimensions
var margin = this.options.margin;
var width = this.width;
var height = this.height;
// reset svg
if (this.svg !== undefined) {
this.$el.find('svg').remove();
}
// add main group and translate
this.svg = d3.select(this.$el[0]).append('svg')
.append('g')
.attr('transform', 'translate(' + (this.widthContainer - width) / 2 + ',' +
(this.heightContainer - height) / 2 + ')');
// reset sorting
this.rowSortOrder = false;
this.colSortOrder = false;
// build
this.d3RowLabels = this._buildRowLabels();
this.d3ColLabels = this._buildColLabels();
this.d3HeatMap = this._buildHeatMap();
this.d3Legend = this._buildLegend();
this.d3Title = this._buildTitle();
},
// build title
_buildTitle: function() {
// link this
var self = this;
// gather data
var height = this.height;
var width = this.width;
var cellSize = this.cellSize;
var fontSize = this.fontSize;
var title = this.options.title;
// add title
return this.svg.append('g')
.append('text')
.attr('x', width / 2)
.attr('y', height + 3 * cellSize + fontSize + 3)
.attr('text-anchor', 'middle')
.text(title);
},
// build legend
_buildLegend: function() {
// link this
var self = this;
// gather data
var cellSize = this.cellSize;
var fontSize = this.fontSize;
var height = this.height;
var legendCellWidth = this.width / this.nColors;
// create range labels
var dataRange = [];
for(var i = 0; i < this.nColors; i++) {
dataRange.push('');
}
// prepare indices
var dataRangeMin = 0;
var dataRangeMid = parseInt((dataRange.length - 1) / 2);
var dataRangeMax = dataRange.length - 1;
// add labels
dataRange[dataRangeMin] = this.min;
dataRange[dataRangeMid] = this.mid;
dataRange[dataRangeMax] = this.max;
// create legend
var legend = this.svg.selectAll('.legend')
.data(dataRange)
.enter().append('g')
.attr('class', 'legend');
// add boxes
legend.append('rect')
.attr('x', function(d, i) {
return legendCellWidth * i;
})
.attr('y', height + cellSize)
.attr('width', legendCellWidth)
.attr('height', cellSize)
.style('fill', function(d, i) {
return self.options.colors[i];
});
// add text
legend.append('text')
.attr('class', 'mono')
.text(function(d) {
return d;
})
.attr('width', legendCellWidth)
.attr('x', function(d, i) {
return legendCellWidth * i;
})
.attr('y', height + cellSize - 3)
.style('font-size', fontSize + 'px');
// return
return legend;
},
// build column labels
_buildColLabels: function() {
// link this
var self = this;
// gather data
var cellSize = this.cellSize;
var fontSize = this.fontSize;
var colIndex = this.colIndex;
var colLabel = this.colLabel;
// column labels
var colLabels = this.svg.append('g')
.selectAll('.colLabelg')
.data(colLabel)
.enter()
.append('text')
.text(function (d) {
return d;
})
.attr('x', 0)
.attr('y', function (d, i) {
return colIndex.indexOf(i) * cellSize;
})
.style('font-size', fontSize + 'px')
.style('text-anchor', 'left')
.attr('transform', 'translate(' + cellSize / 2 + ', -17) rotate (-90)')
.attr('class', function (d, i) {
return 'colLabel mono c' + i;
})
.on('mouseover', function(d) {
d3.select(this).classed('text-hover',true);
})
.on('mouseout' , function(d) {
d3.select(this).classed('text-hover',false);
})
.on('click', function(d, i) {
self.colSortOrder=!self.colSortOrder;
self._sortByLabel('c', 'row', self.rowNumber, i, self.colSortOrder);
d3.select('#order').property('selectedIndex', 4).node().focus();
});
// return
return colLabels;
},
// build row labels
_buildRowLabels: function() {
// link this
var self = this;
// gather data
var cellSize = this.cellSize;
var fontSize = this.fontSize;
var rowIndex = this.rowIndex;
var rowLabel = this.rowLabel;
// draw labels
var rowLabels = this.svg.append('g')
.selectAll('.rowLabelg')
.data(rowLabel)
.enter()
.append('text')
.text(function (d) {
return d;
})
.attr('x', 0)
.attr('y', function (d, i) {
return rowIndex.indexOf(i) * cellSize;
})
.style('font-size', fontSize + 'px')
.style('text-anchor', 'end')
.attr('transform', 'translate(-10,' + cellSize / 1.5 + ')')
.attr('class', function (d, i) {
return 'rowLabel mono r' + i;
} )
.on('mouseover', function(d) {
d3.select(this).classed('text-hover',true);
})
.on('mouseout' , function(d) {
d3.select(this).classed('text-hover',false);
})
.on('click', function(d, i) {
self.rowSortOrder=!self.rowSortOrder;
self._sortByLabel('r', 'col', self.colNumber, i, self.rowSortOrder);
d3.select('#order').property('selectedIndex', 4).node().focus();
});
// return
return rowLabels;
},
// build heat map
_buildHeatMap: function() {
// link this
var self = this;
// gather data
var cellSize = this.cellSize;
var rowIndex = this.rowIndex;
var rowLabel = this.rowLabel;
var colIndex = this.colIndex;
var colLabel = this.colLabel;
// heat map
var heatmap = this.svg.append('g').attr('class','g3')
.selectAll('.cellg')
.data(self.data, function(d) {
return d.row + ':' + d.col;
})
.enter()
.append('rect')
.attr('x', function(d) {
return colIndex.indexOf(d.col) * cellSize;
})
.attr('y', function(d) {
return rowIndex.indexOf(d.row) * cellSize;
})
.attr('class', function(d){
return 'cell cell-border cr' + d.row + ' cc' + d.col;
})
.attr('width', cellSize)
.attr('height', cellSize)
.style('fill', function(d) {
return self.colorScale(d.value);
})
.on('mouseover', function(d){
// highlight text
d3.select(this).classed('cell-hover',true);
d3.selectAll('.rowLabel').classed('text-highlight',function(r,ri){ return ri==(d.row);});
d3.selectAll('.colLabel').classed('text-highlight',function(c,ci){ return ci==(d.col);});
// update the tooltip position and value
d3.select('#heatmap-tooltip')
.style('left', (d3.event.pageX+10) + 'px')
.style('top', (d3.event.pageY-10) + 'px')
.select('#value')
.text('Label: ' + rowLabel[d.row] + ' | ' + colLabel[d.col] + ', Value: ' + d.value);
// show the tooltip
d3.select('#heatmap-tooltip').classed('hidden', false);
})
.on('mouseout', function(){
d3.select(this).classed('cell-hover',false);
d3.selectAll('.rowLabel').classed('text-highlight',false);
d3.selectAll('.colLabel').classed('text-highlight',false);
d3.select('#heatmap-tooltip').classed('hidden', true);
});
// return
return heatmap;
},
// change ordering of cells
_sortByLabel: function(rORc, rowORcol, n, index, sortOrder) {
// get cell size
var cellSize = this.cellSize;
// define transition / prepare element
var t = this.svg.transition().duration(this.options.pace);
// create cells
var cells=[];
for (var i = 0; i < n; i++) {
cells[i] = {
value: this.min - 1
}
cells[i][rowORcol] = i;
}
// collect cells
t.selectAll('.c' + rORc + index).filter(function(ce) {
cells[ce[rowORcol]].value = ce.value;
});
// sort cells
cells.sort(function(a, b) {
if (sortOrder) {
return b.value - a.value;
} else {
return a.value - b.value;
}
});
// get sorted key list
var sorted = [];
for (var i in cells) {
sorted.push(cells[i][rowORcol]);
}
// rows or columns
if(rORc == 'r') {
// sort cells
t.selectAll('.cell')
.attr('x', function(d) {
return sorted.indexOf(d.col) * cellSize;
});
// sort labels
t.selectAll('.colLabel')
.attr('y', function (d, i) {
return sorted.indexOf(i) * cellSize;
});
} else {
// sort cells
t.selectAll('.cell')
.attr('y', function(d) {
return sorted.indexOf(d.row) * cellSize;
});
// sort labels
t.selectAll('.rowLabel')
.attr('y', function (d, i) {
return sorted.indexOf(i) * cellSize;
});
}
},
// sort function
_sortByOrder: function (value) {
// link this
var self = this;
// gather data
var cellSize = this.cellSize;
var rowIndex = this.rowIndex;
var rowLabel = this.rowLabel;
var colIndex = this.colIndex;
var colLabel = this.colLabel;
// set duration / select element
var t = this.svg.transition().duration(this.options.pace);
if(value=='hclust'){
t.selectAll('.cell')
.attr('x', function(d) {
return colIndex.indexOf(d.col) * cellSize;
})
.attr('y', function(d) {
return rowIndex.indexOf(d.row) * cellSize;
});
t.selectAll('.rowLabel')
.attr('y', function(d, i) {
return rowIndex.indexOf(i) * cellSize;
});
t.selectAll('.colLabel')
.attr('y', function(d, i) {
return colIndex.indexOf(i) * cellSize;
});
} else if (value=='byboth') {
t.selectAll('.cell')
.attr('x', function(d) {
return d.col * cellSize;
})
.attr('y', function(d) {
return d.row * cellSize;
});
t.selectAll('.rowLabel')
.attr('y', function (d, i) {
return i * cellSize;
});
t.selectAll('.colLabel')
.attr('y', function (d, i) {
return i * cellSize;
});
} else if (value=='byrow') {
t.selectAll('.cell')
.attr('y', function(d) {
return d.row * cellSize;
});
t.selectAll('.rowLabel')
.attr('y', function (d, i) {
return i * cellSize;
});
} else if (value=='bycol'){
t.selectAll('.cell')
.attr('x', function(d) {
return d.col * cellSize;
});
t.selectAll('.colLabel')
.attr('y', function (d, i) {
return i * cellSize;
});
}
},
// selection of cells
_addSelectionTool: function() {
//
// selection
//
var sa=d3.select('.g3')
.on('mousedown', function() {
if( !d3.event.altKey) {
d3.selectAll('.cell-selected').classed('cell-selected', false);
d3.selectAll('.rowLabel').classed('text-selected', false);
d3.selectAll('.colLabel').classed('text-selected', false);
}
var p = d3.mouse(this);
sa.append('rect')
.attr({
rx : 0,
ry : 0,
class : 'selection',
x : p[0],
y : p[1],
width : 1,
height : 1
})
})
.on('mousemove', function() {
var s = sa.select('rect.selection');
if(!s.empty()) {
var p = d3.mouse(this),
d = {
x : parseInt(s.attr('x'), 10),
y : parseInt(s.attr('y'), 10),
width : parseInt(s.attr('width'), 10),
height : parseInt(s.attr('height'), 10)
},
move = {
x : p[0] - d.x,
y : p[1] - d.y
};
if(move.x < 1 || (move.x*2<d.width)) {
d.x = p[0];
d.width -= move.x;
} else {
d.width = move.x;
}
if(move.y < 1 || (move.y*2<d.height)) {
d.y = p[1];
d.height -= move.y;
} else {
d.height = move.y;
}
s.attr(d);
// deselect all temporary selected state objects
d3.selectAll('.cell-selection.cell-selected').classed('cell-selected', false);
d3.selectAll('.text-selection.text-selected').classed('text-selected',false);
d3.selectAll('.cell').filter(function(cell_d, i) {
if(!d3.select(this).classed('cell-selected') &&
// inner circle inside selection frame
(this.x.baseVal.value)+cellSize >= d.x && (this.x.baseVal.value)<=d.x+d.width &&
(this.y.baseVal.value)+cellSize >= d.y && (this.y.baseVal.value)<=d.y+d.height)
{
d3.select(this)
.classed('cell-selection', true)
.classed('cell-selected', true);
d3.select('.r' + cell_d.row)
.classed('text-selection',true)
.classed('text-selected',true);
d3.select('.c' + cell_d.col)
.classed('text-selection',true)
.classed('text-selected',true);
}
});
}
})
.on('mouseup', function() {
// remove selection frame
sa.selectAll('rect.selection').remove();
// remove temporary selection marker class
d3.selectAll('.cell-selection').classed('cell-selection', false);
d3.selectAll('.text-selection').classed('text-selection', false);
})
.on('mouseout', function() {
if(d3.event.relatedTarget.tagName=='html') {
// remove selection frame
sa.selectAll('rect.selection').remove();
// remove temporary selection marker class
d3.selectAll('.cell-selection').classed('cell-selection', false);
d3.selectAll('.rowLabel').classed('text-selected',false);
d3.selectAll('.colLabel').classed('text-selected',false);
}
});
},
// template
_templateSelect: function() {
return '<select id="order">' +
'<option value="hclust">Cluster</option>' +
'<option value="byboth">Sort by row and column</option>' +
'<option value="byrow">Sort by row label</option>' +
'<option value="bycol">Sort by column label</option>' +
'</select>';
},
// template
_templateTooltip: function() {
return '<div id="heatmap-tooltip" class="hidden">' +
'<p><span id="value"></p>'
'</div>';
}
});
});
config/plugins/visualizations/charts/static/charts/heatmap/logo.png
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config/plugins/visualizations/charts/static/charts/heatmap/wrapper.js
+86
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@@ -0,0 +1,86 @@
// dependencies
define(['utils/utils', 'plugin/charts/heatmap/heatmap-plugin', 'plugin/charts/heatmap/heatmap-parameters'],
function(Utils, HeatmapPlugin, HeatmapParameters) {
// widget
return Backbone.View.extend(
{
// initialize
initialize: function(app, options) {
this.app = app;
this.options = options;
},
// render
draw : function(process_id, chart, request_dictionary)
{
// link this
var self = this;
// loop through data groups
var index = 0;
for (var group_index in request_dictionary.groups) {
// configure request
var tmp_dict = {
id : request_dictionary.id,
groups : [{
key : request_dictionary.groups[group_index].key,
columns : {
row_label: {
index : index++,
is_label : true
},
col_label: {
index : index++,
is_label : true
},
value: {
index : index++
}
}
}]
};
// target div
var group_div = self.options.canvas[group_index];
// draw group
this._draw_group(group_index, group_div, chart, tmp_dict, function(group_index) {
if (group_index == request_dictionary.groups.length - 1) {
// set chart state
chart.state('ok', 'Heat map drawn.');
// unregister process
chart.deferred.done(process_id);
}
});
}
},
// draw group
_draw_group: function(group_index, div, chart, request_dictionary, callback) {
// link this
var self = this;
// request data
this.app.datasets.request(request_dictionary, function() {
// get group
var group = request_dictionary.groups[0];
// draw plot
var heatmap = new HeatmapPlugin({
'title' : group.key,
'colors' : HeatmapParameters.colorSets[chart.settings.get('color_set')],
'data' : group.values,
'div' : div
});
// callback on completion
callback (group_index);
});
}
});
});
config/plugins/visualizations/charts/static/charts/highcharts_boxplot/config.js
+40
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@@ -0,0 +1,40 @@
define([], function() {
return {
title : 'Box plot',
category : 'Data processing (requires \'charts\' tool from Toolshed)',
library : 'highcharts.js',
tag : 'div',
execute : 'boxplot',
columns : {
y : {
title : 'Observations'
}
},
settings : {
separator_label : {
title : 'X axis',
type : 'separator'
},
x_axis_label : {
title : 'Axis label',
info : 'Provide a label for the axis.',
type : 'text',
init : 'X-axis',
placeholder : 'Axis label'
},
separator_tick : {
title : 'Y axis',
type : 'separator'
},
y_axis_label : {
title : 'Axis label',
info : 'Provide a label for the axis.',
type : 'text',
init : 'Y-axis',
placeholder : 'Axis label'
}
}
};
});
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config/plugins/visualizations/charts/static/charts/highcharts_boxplot/wrapper.js
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// dependencies
define(['utils/utils'], function(Utils) {
// widget
return Backbone.View.extend(
{
// highcharts configuration
hc_config : {
chart: {
type: 'boxplot'
},
title: {
text: ''
},
legend: {
enabled: false
},
credits: {
enabled: false
},
plotOptions: {
series: {
animation: false
}
},
xAxis: {
categories: [],
title: {
text: ''
}
},
yAxis: {
title: {
text: ''
}
},
series: [{
name: 'Details:',
data: [],
tooltip: {
headerFormat: '<em>{point.key}</em><br/>'
}
}]
},
// initialize
initialize: function(app, options) {
this.app = app;
this.options = options;
},
// render
draw : function(process_id, chart, request_dictionary)
{
// configure request
var index = 0;
for (var i in request_dictionary.groups) {
var group = request_dictionary.groups[i];
group.columns = null;
group.columns = {
x: {
index: index++
}
}
}
// set axis labels
this.hc_config.xAxis.title.text = chart.settings.get('x_axis_label');
this.hc_config.yAxis.title.text = chart.settings.get('y_axis_label');
// request data
var self = this;
this.app.datasets.request(request_dictionary, function() {
// reset data/categories
var data = [];
var categories = [];
// loop through data groups
for (var key in request_dictionary.groups) {
// get group
var group = request_dictionary.groups[key];
// add category
categories.push(group.key);
// format chart data
var point = [];
for (var key in group.values) {
point.push(group.values[key].x);
}
// add to data
data.push (point);
}
// categories
self.hc_config.xAxis.categories = categories;
// update data
self.hc_config.series[0].data = data;
// draw plot
self.options.canvas[0].highcharts(self.hc_config);
// set chart state
chart.state('ok', 'Box plot drawn.');
// unregister process
chart.deferred.done(process_id);
});
}
});
});
config/plugins/visualizations/charts/static/charts/histogram/config.js
-21
View File
@@ -1,21 +0,0 @@
define(['plugin/charts/_nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Histogram',
execute : true,
columns : {
y : {
title : 'Observations'
}
},
settings : {
x_axis_label : {
init : 'Breaks'
},
y_axis_label : {
init : 'Density'
}
}
});
});
config/plugins/visualizations/charts/static/charts/horizontal/config.js
-12
View File
@@ -1,12 +0,0 @@
define(['plugin/charts/_nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Bar diagram (horizontal)',
settings : {
x_axis_type : {
init : 'hide'
}
}
});
});
config/plugins/visualizations/charts/static/charts/line/config.js
-7
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@@ -1,7 +0,0 @@
define(['plugin/charts/_nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Line chart',
});
});
config/plugins/visualizations/charts/static/charts/linewithfocus/config.js
-7
View File
@@ -1,7 +0,0 @@
define(['plugin/charts/_nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Line with focus',
});
});
config/plugins/visualizations/charts/static/charts/_nvd3/config.js → config/plugins/visualizations/charts/static/charts/nvd3/config.js
+6 -3
View File
@@ -1,13 +1,16 @@
define([], function() {
return {
title : '',
title : '',
category : '',
library : 'nvd3.js',
tag : 'svg',
columns : {
y : {
title : 'Values for y-axis'
}
},
settings : {
settings : {
separator_label : {
title : 'X axis',
type : 'separator'
@@ -211,7 +214,7 @@ return {
value : 'false'
}
]
},
}
}
};
config/plugins/visualizations/charts/static/charts/_nvd3/nvd3.js → config/plugins/visualizations/charts/static/charts/nvd3/nvd3.js
+5 -7
View File
@@ -15,7 +15,7 @@ return Backbone.View.extend(
{
// request data
var self = this;
this.app.datasets.request(request_dictionary, function(data) {
this.app.datasets.request(request_dictionary, function() {
nv.addGraph(function() {
// x axis
self._axis(nvd3_model.xAxis, chart.settings.get('x_axis_type'), chart.settings.get('x_axis_tick'));
@@ -31,9 +31,7 @@ return Backbone.View.extend(
.axisLabelDistance(30);
// controls
if (chart.groups.length == 1) {
nvd3_model.options({ showControls: false });
}
nvd3_model.options({showControls: false});
// legend
var legend_visible = true;
@@ -47,9 +45,9 @@ return Backbone.View.extend(
callback(nvd3_model);
}
// parse data to svg
self.options.svg.datum(data)
.call(nvd3_model);
// parse data to canvas
self.options.canvas[0].datum(request_dictionary.groups)
.call(nvd3_model);
// refresh on window resize
nv.utils.windowResize(nvd3_model.update);
config/plugins/visualizations/charts/static/charts/nvd3_bar/config.js
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define(['plugin/charts/nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Regular',
category : 'Bar diagrams'
});
});
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config/plugins/visualizations/charts/static/charts/bardiagram/bardiagram.js → config/plugins/visualizations/charts/static/charts/nvd3_bar/wrapper.js
+1 -1
View File
@@ -1,5 +1,5 @@
// dependencies
define(['plugin/charts/_nvd3/nvd3'], function(NVD3) {
define(['plugin/charts/nvd3/nvd3'], function(NVD3) {
// widget
return Backbone.View.extend(
config/plugins/visualizations/charts/static/charts/nvd3_bar_horizontal/config.js
+13
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@@ -0,0 +1,13 @@
define(['plugin/charts/nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Horizontal',
category : 'Bar diagrams',
settings : {
x_axis_type : {
init : 'hide'
}
}
});
});
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config/plugins/visualizations/charts/static/charts/horizontal/horizontal.js → config/plugins/visualizations/charts/static/charts/nvd3_bar_horizontal/wrapper.js
+1 -1
View File
@@ -1,5 +1,5 @@
// dependencies
define(['plugin/charts/_nvd3/nvd3'], function(NVD3) {
define(['plugin/charts/nvd3/nvd3'], function(NVD3) {
// widget
return Backbone.View.extend(
config/plugins/visualizations/charts/static/charts/nvd3_bar_horizontal_stacked/config.js
+13
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@@ -0,0 +1,13 @@
define(['plugin/charts/nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Stacked horizontal',
category : 'Bar diagrams',
settings : {
x_axis_type : {
init : 'hide'
}
}
});
});
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config/plugins/visualizations/charts/static/charts/nvd3_bar_horizontal_stacked/wrapper.js
+23
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// dependencies
define(['plugin/charts/nvd3/nvd3'], function(NVD3) {
// widget
return Backbone.View.extend(
{
// initialize
initialize: function(app, options) {
this.app = app;
this.options = options;
},
// render
draw : function(process_id, chart, request_dictionary)
{
var nvd3 = new NVD3(this.app, this.options);
nvd3.draw(process_id, nv.models.multiBarHorizontalChart(), chart, request_dictionary, function(nvd3_model) {
nvd3_model.stacked(true);
});
}
});
});
config/plugins/visualizations/charts/static/charts/nvd3_bar_stacked/config.js
+8
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@@ -0,0 +1,8 @@
define(['plugin/charts/nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Stacked',
category : 'Bar diagrams'
});
});
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config/plugins/visualizations/charts/static/charts/nvd3_bar_stacked/wrapper.js
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@@ -0,0 +1,23 @@
// dependencies
define(['plugin/charts/nvd3/nvd3'], function(NVD3) {
// widget
return Backbone.View.extend(
{
// initialize
initialize: function(app, options) {
this.app = app;
this.options = options;
},
// render
draw : function(process_id, chart, request_dictionary)
{
var nvd3 = new NVD3(this.app, this.options);
nvd3.draw(process_id, nv.models.multiBarChart(), chart, request_dictionary, function(nvd3_model) {
nvd3_model.stacked(true);
});
}
});
});
config/plugins/visualizations/charts/static/charts/nvd3_histogram/config.js
+29
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@@ -0,0 +1,29 @@
define(['plugin/charts/nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Histogram',
category : 'Data processing (requires \'charts\' tool from Toolshed)',
execute : 'histogram',
columns : {
y : {
title : 'Observations'
}
},
settings : {
x_axis_label : {
init : 'Breaks'
},
y_axis_label : {
init : 'Density'
},
y_axis_type : {
init : 'f'
},
y_axis_tick : {
init : '.2'
}
}
});
});
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config/plugins/visualizations/charts/static/charts/nvd3_histogram/wrapper.js
+41
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@@ -0,0 +1,41 @@
// dependencies
define(['plugin/charts/nvd3/nvd3'], function(NVD3) {
// widget
return Backbone.View.extend(
{
// initialize
initialize: function(app, options) {
this.app = app;
this.options = options;
},
// render
draw : function(process_id, chart, request_dictionary)
{
// configure request
var index = 1;
for (var i in request_dictionary.groups) {
var group = request_dictionary.groups[i];
group.columns = {
x: {
index: 0
},
y: {
index: index++
}
}
}
// link this
var self = this;
// load nvd3
var nvd3 = new NVD3(this.app, this.options);
nvd3.draw(process_id, nv.models.multiBarChart(), chart, request_dictionary, function(nvd3_model) {
nvd3_model.options({showControls: true});
});
}
});
});
config/plugins/visualizations/charts/static/charts/nvd3_histogram_discrete/config.js
+29
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@@ -0,0 +1,29 @@
define(['plugin/charts/nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Histogram (discrete)',
category : 'Data processing (requires \'charts\' tool from Toolshed)',
execute : 'histogramdiscrete',
columns : {
y : {
title : 'Observations',
is_label : true
}
},
settings : {
x_axis_label : {
init : 'Breaks'
},
y_axis_label : {
init : 'Density'
},
y_axis_type : {
init : 'f'
},
y_axis_tick : {
init : '.2'
}
}
});
});
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config/plugins/visualizations/charts/static/charts/histogram/histogram.js → config/plugins/visualizations/charts/static/charts/nvd3_histogram_discrete/wrapper.js
+13 -5
View File
@@ -1,5 +1,5 @@
// dependencies
define(['plugin/charts/_nvd3/nvd3'], function(NVD3) {
define(['plugin/charts/nvd3/nvd3'], function(NVD3) {
// widget
return Backbone.View.extend(
@@ -14,15 +14,23 @@ return Backbone.View.extend(
draw : function(process_id, chart, request_dictionary)
{
// configure request
var index = 0;
var index = 1;
for (var i in request_dictionary.groups) {
var group = request_dictionary.groups[i];
group.columns = {
x: index++,
y: index++
x: {
index: 0
},
y: {
index: index++
},
}
}
// link this
var self = this;
// load nvd3
var nvd3 = new NVD3(this.app, this.options);
nvd3.draw(process_id, nv.models.multiBarChart(), chart, request_dictionary);
}
config/plugins/visualizations/charts/static/charts/nvd3_line/config.js
+8
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@@ -0,0 +1,8 @@
define(['plugin/charts/nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Line chart',
category : 'Others'
});
});
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config/plugins/visualizations/charts/static/charts/line/line.js → config/plugins/visualizations/charts/static/charts/nvd3_line/wrapper.js
+1 -1
View File
@@ -1,5 +1,5 @@
// dependencies
define(['plugin/charts/_nvd3/nvd3'], function(NVD3) {
define(['plugin/charts/nvd3/nvd3'], function(NVD3) {
// widget
return Backbone.View.extend(
config/plugins/visualizations/charts/static/charts/nvd3_line_focus/config.js
+8
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@@ -0,0 +1,8 @@
define(['plugin/charts/nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Line with focus',
category : 'Others'
});
});
config/plugins/visualizations/charts/static/charts/nvd3_line_focus/logo.png
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config/plugins/visualizations/charts/static/charts/linewithfocus/linewithfocus.js → config/plugins/visualizations/charts/static/charts/nvd3_line_focus/wrapper.js
+1 -1
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@@ -1,5 +1,5 @@
// dependencies
define(['plugin/charts/_nvd3/nvd3'], function(NVD3) {
define(['plugin/charts/nvd3/nvd3'], function(NVD3) {
// widget
return Backbone.View.extend(
config/plugins/visualizations/charts/static/charts/nvd3_pie/config.js
+115
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@@ -0,0 +1,115 @@
define([], function() {
return {
title : 'Pie chart',
library : 'nvd3.js',
category : 'Area charts',
tag : 'svg',
use_panels : true,
columns : {
label : {
title : 'Labels',
is_label : true
},
y : {
title : 'Values'
}
},
settings : {
show_legend : {
title : 'Show legend',
info : 'Would you like to add a legend?',
type : 'select',
init : 'false',
data : [
{
label : 'Yes',
value : 'true'
},
{
label : 'No',
value : 'false'
}
]
},
donut_ratio : {
title : 'Donut ratio',
info : 'Determine how large the donut hole will be.',
type : 'select',
init : '0.5',
data : [
{
label : '50%',
value : '0.5'
},
{
label : '25%',
value : '0.25'
},
{
label : '10%',
value : '0.10'
},
{
label : '0%',
value : '0'
}
]
},
label_separator : {
type : 'separator',
title : 'Label settings'
},
label_type : {
title : 'Donut label',
info : 'What would you like to show for each slice?',
type : 'select',
init : 'percent',
data : [
{
label : '-- Nothing --',
value : 'hide',
hide : 'label_outside'
},
{
label : 'Label column',
value : 'key',
show : 'label_outside'
},
{
label : 'Value column',
value : 'value',
show : 'label_outside'
},
{
label : 'Percentage',
value : 'percent',
show : 'label_outside'
}
],
},
label_outside : {
title : 'Show outside',
info : 'Would you like to show labels outside the donut?',
type : 'select',
init : 'false',
data : [
{
label : 'Yes',
value : 'true'
},
{
label : 'No',
value : 'false'
}
]
}
}
};
});
config/plugins/visualizations/charts/static/charts/nvd3_pie/logo.png
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config/plugins/visualizations/charts/static/charts/nvd3_pie/wrapper.js
+115
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@@ -0,0 +1,115 @@
// dependencies
define(['utils/utils'], function(Utils) {
// widget
return Backbone.View.extend(
{
// initialize
initialize: function(app, options) {
this.app = app;
this.options = options;
},
// render
draw : function(process_id, chart, request_dictionary)
{
// request data
var self = this;
this.app.datasets.request(request_dictionary, function() {
// loop through data groups
for (var group_index in request_dictionary.groups) {
// get group
var group = request_dictionary.groups[group_index];
// draw group
self._draw_group(chart, group, self.options.canvas[group_index]);
}
// set chart state
chart.state('ok', 'Pie chart has been drawn.');
// unregister process
chart.deferred.done(process_id);
});
},
// draw group
_draw_group: function(chart, group, canvas) {
// add title
var title = canvas.append('text');
// configure title attributes
this._fix_title(chart, canvas, title, group.key);
// format chart data
var pie_data = [];
for (var key in group.values) {
var value = group.values[key];
pie_data.push ({
y : value.y,
x : value.label
});
}
// add graph to screen
var self = this;
nv.addGraph(function() {
// legend
var legend_visible = true;
if (chart.settings.get('show_legend') == 'false') {
legend_visible = false;
}
// legend
var label_outside = true;
if (chart.settings.get('label_outside') == 'false') {
label_outside = false;
}
// label type
var label_type = chart.settings.get('label_type');
// ratio
var donut_ratio = parseFloat(chart.settings.get('donut_ratio'))
// create chart model
var chart_3d = nv.models.pieChart()
.donut(true)
.labelThreshold(.05)
.showLegend(legend_visible)
.labelType(label_type)
.donutRatio(donut_ratio)
.donutLabelsOutside(label_outside);
// add data to canvas
canvas.datum(pie_data)
.call(chart_3d);
// add resize trigger
nv.utils.windowResize(function() {
// update chart
chart_3d.update();
// fix title
self._fix_title(chart, canvas, title, group.key);
});
});
},
// fix title
_fix_title: function(chart, canvas, title_element, title_text) {
// update title
var width = parseInt(canvas.style('width'));
var height = parseInt(canvas.style('height'));
// add title
title_element.attr('x', width / 2)
.attr('y', height - 10)
.attr('text-anchor', 'middle')
.text(title_text);
}
});
});
config/plugins/visualizations/charts/static/charts/nvd3_scatter/config.js
+13
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@@ -0,0 +1,13 @@
define(['plugin/charts/nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Scatter plot',
category : 'Others',
columns : {
x : {
title : 'Values for x-axis'
}
}
});
});
config/plugins/visualizations/charts/static/charts/nvd3_scatter/logo.png
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config/plugins/visualizations/charts/static/charts/scatterplot/scatterplot.js → config/plugins/visualizations/charts/static/charts/nvd3_scatter/wrapper.js
+1 -1
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@@ -1,5 +1,5 @@
// dependencies
define(['plugin/charts/_nvd3/nvd3'], function(NVD3) {
define(['plugin/charts/nvd3/nvd3'], function(NVD3) {
// widget
return Backbone.View.extend(
config/plugins/visualizations/charts/static/charts/nvd3_stackedarea/config.js
+8
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@@ -0,0 +1,8 @@
define(['plugin/charts/nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Regular',
category : 'Area charts'
});
});
config/plugins/visualizations/charts/static/charts/nvd3_stackedarea/logo.png
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config/plugins/visualizations/charts/static/charts/stackedarea/stackedarea.js → config/plugins/visualizations/charts/static/charts/nvd3_stackedarea/wrapper.js
+1 -1
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@@ -1,5 +1,5 @@
// dependencies
define(['plugin/charts/_nvd3/nvd3'], function(NVD3) {
define(['plugin/charts/nvd3/nvd3'], function(NVD3) {
// widget
return Backbone.View.extend(
config/plugins/visualizations/charts/static/charts/nvd3_stackedarea_full/config.js
+8
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@@ -0,0 +1,8 @@
define(['plugin/charts/nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Expanded',
category : 'Area charts'
});
});
config/plugins/visualizations/charts/static/charts/nvd3_stackedarea_full/logo.png
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config/plugins/visualizations/charts/static/charts/nvd3_stackedarea_full/wrapper.js
+27
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@@ -0,0 +1,27 @@
// dependencies
define(['plugin/charts/nvd3/nvd3'], function(NVD3) {
// widget
return Backbone.View.extend(
{
// initialize
initialize: function(app, options) {
this.app = app;
this.options = options;
},
// render
draw : function(process_id, chart, request_dictionary)
{
var nvd3 = new NVD3(this.app, this.options);
nvd3.draw(process_id, nv.models.stackedAreaChart(), chart, request_dictionary, function(nvd3_model) {
// make plot
nvd3_model.x(function(d) { return d.x })
.y(function(d) { return d.y })
.clipEdge(true)
.style('expand');
});
}
});
});
config/plugins/visualizations/charts/static/charts/nvd3_stackedarea_stream/config.js
+8
View File
@@ -0,0 +1,8 @@
define(['plugin/charts/nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Stream',
category : 'Area charts'
});
});
config/plugins/visualizations/charts/static/charts/nvd3_stackedarea_stream/logo.png
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config/plugins/visualizations/charts/static/charts/nvd3_stackedarea_stream/wrapper.js
+27
View File
@@ -0,0 +1,27 @@
// dependencies
define(['plugin/charts/nvd3/nvd3'], function(NVD3) {
// widget
return Backbone.View.extend(
{
// initialize
initialize: function(app, options) {
this.app = app;
this.options = options;
},
// render
draw : function(process_id, chart, request_dictionary)
{
var nvd3 = new NVD3(this.app, this.options);
nvd3.draw(process_id, nv.models.stackedAreaChart(), chart, request_dictionary, function(nvd3_model) {
// make plot
nvd3_model.x(function(d) { return d.x })
.y(function(d) { return d.y })
.clipEdge(true)
.style('stream');
});
}
});
});
config/plugins/visualizations/charts/static/charts/piechart/config.js
-7
View File
@@ -1,7 +0,0 @@
define(['plugin/charts/_nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Pie chart',
});
});
config/plugins/visualizations/charts/static/charts/piechart/piechart.js
-57
View File
@@ -1,57 +0,0 @@
// dependencies
define(['utils/utils'], function(Utils) {
// widget
return Backbone.View.extend(
{
// initialize
initialize: function(app, options) {
this.app = app;
this.options = options;
},
// render
draw : function(process_id, chart, request_dictionary)
{
// request data
var self = this;
this.app.datasets.request(request_dictionary, function(data) {
// loop through data groups
for (var key in request_dictionary.groups) {
// get group
var group = request_dictionary.groups[key];
// format chart data
var pie_data = [];
for (var key in group.values) {
var value = group.values[key];
pie_data.push ({
key : value.x,
y : value.y
});
}
// add graph to screen
nv.addGraph(function() {
self.chart_3d = nv.models.pieChart()
.donut(true)
.showLegend(false);
self.options.svg.datum(pie_data)
.call(self.chart_3d);
nv.utils.windowResize(self.chart_3d.update);
// set chart state
chart.state('ok', 'Pie chart drawn.');
// unregister process
chart.deferred.done(process_id);
});
}
});
}
});
});
config/plugins/visualizations/charts/static/charts/scatterplot/config.js
-12
View File
@@ -1,12 +0,0 @@
define(['plugin/charts/_nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Scatter plot',
columns : {
x : {
title : 'Values for x-axis'
}
}
});
});
config/plugins/visualizations/charts/static/charts/stackedarea/config.js
-7
View File
@@ -1,7 +0,0 @@
define(['plugin/charts/_nvd3/config'], function(nvd3_config) {
return $.extend(true, {}, nvd3_config, {
title : 'Stacked area'
});
});
config/plugins/visualizations/charts/static/charts/types.js
+45 -27
View File
@@ -1,22 +1,34 @@
// dependencies
define(['plugin/charts/bardiagram/config',
//'plugin/charts/boxplot/config',
'plugin/charts/histogram/config',
'plugin/charts/horizontal/config',
'plugin/charts/line/config',
'plugin/charts/linewithfocus/config',
'plugin/charts/piechart/config',
'plugin/charts/scatterplot/config',
'plugin/charts/stackedarea/config',
], function(bardiagram,
//boxplot,
histogram,
horizontal,
line,
linewithfocus,
piechart,
scatterplot,
stackedarea
define(['plugin/charts/nvd3_bar/config',
'plugin/charts/nvd3_bar_stacked/config',
'plugin/charts/nvd3_bar_horizontal/config',
'plugin/charts/nvd3_bar_horizontal_stacked/config',
'plugin/charts/nvd3_histogram/config',
'plugin/charts/nvd3_histogram_discrete/config',
'plugin/charts/nvd3_line/config',
'plugin/charts/nvd3_line_focus/config',
'plugin/charts/nvd3_pie/config',
'plugin/charts/nvd3_scatter/config',
'plugin/charts/nvd3_stackedarea/config',
'plugin/charts/nvd3_stackedarea_full/config',
'plugin/charts/nvd3_stackedarea_stream/config',
'plugin/charts/highcharts_boxplot/config',
'plugin/charts/heatmap/config',
], function(nvd3_bar,
nvd3_bar_stacked,
nvd3_bar_horizontal,
nvd3_bar_horizontal_stacked,
nvd3_histogram,
nvd3_histogram_discrete,
nvd3_line,
nvd3_line_focus,
nvd3_pie,
nvd3_scatter,
nvd3_stackedarea,
nvd3_stackedarea_full,
nvd3_stackedarea_stream,
highcharts_boxplot,
heatmap
) {
// widget
@@ -24,15 +36,21 @@ return Backbone.Model.extend(
{
// types
defaults: {
'bardiagram' : bardiagram,
//'boxplot' : boxplot,
'horizontal' : horizontal,
'histogram' : histogram,
'line' : line,
'linewithfocus' : linewithfocus,
'piechart' : piechart,
'scatterplot' : scatterplot,
'stackedarea' : stackedarea
'nvd3_bar' : nvd3_bar,
'nvd3_bar_stacked' : nvd3_bar_stacked,
'nvd3_bar_horizontal' : nvd3_bar_horizontal,
'nvd3_bar_horizontal_stacked' : nvd3_bar_horizontal_stacked,
'nvd3_stackedarea' : nvd3_stackedarea,
'nvd3_stackedarea_full' : nvd3_stackedarea_full,
'nvd3_stackedarea_stream' : nvd3_stackedarea_stream,
'nvd3_line' : nvd3_line,
'nvd3_line_focus' : nvd3_line_focus,
'nvd3_scatter' : nvd3_scatter,
'nvd3_pie' : nvd3_pie,
'nvd3_histogram' : nvd3_histogram,
//'nvd3_histogram_discrete' : nvd3_histogram_discrete,
'highcharts_boxplot' : highcharts_boxplot,
'heatmap' : heatmap
}
});
config/plugins/visualizations/charts/static/library/datasets.js
+169 -67
View File
@@ -7,6 +7,9 @@ return Backbone.Collection.extend(
// list of datasets
list: {},
// cache for datablocks
cache: {},
// initialize
initialize: function(app, options)
{
@@ -18,23 +21,23 @@ return Backbone.Collection.extend(
},
// wait
request: function(options, success, error) {
request: function(request_dictionary, success, error) {
// link this
var self = this;
// check if column data is requested
if (options.groups) {
this._fetch(options, success);
if (request_dictionary.groups) {
this._get(request_dictionary, success);
} else {
// check if dataset is available from cache
var dataset = this.list[options.id];
var dataset = this.list[request_dictionary.id];
if (dataset) {
success(dataset);
return;
}
// request dataset
Utils.request('GET', config.root + 'api/datasets/' + options.id, {}, function(dataset) {
Utils.request('GET', config.root + 'api/datasets/' + request_dictionary.id, {}, function(dataset) {
switch (dataset.state) {
case 'error':
if (error) {
@@ -42,65 +45,182 @@ return Backbone.Collection.extend(
}
break;
default:
self.list[options.id] = dataset;
self.list[request_dictionary.id] = dataset;
success(dataset);
}
});
}
},
// get block id
_block_id: function (options, column) {
return options.id + '_' + options.start + '_' + options.end + '_' + column;
},
// fills request dictionary with data from cache/response
_get: function(request_dictionary, callback) {
// set start/end
if (!request_dictionary.start) {
request_dictionary.start = 0;
}
if (!request_dictionary.end) {
request_dictionary.end = this.app.config.get('query_limit');
}
// get column indices
var column_list = [];
var column_map = {};
var column_count = 0;
for (var i in request_dictionary.groups) {
var group = request_dictionary.groups[i];
for (var key in group.columns) {
// identify column
var column = group.columns[key].index;
// check if column is in cache
var block_id = this._block_id(request_dictionary, column);
if (this.cache[block_id]) {
continue;
}
// add to dictionary
if (!column_map[column] && column !== undefined) {
column_map[column] = column_count;
column_list.push(column);
column_count++;
}
}
}
// check length
if (column_list.length == 0) {
// fill dictionary from cache
this._fill_from_cache(request_dictionary);
// parse requested data
callback(request_dictionary);
// return
return;
}
// configure dataset request dictionary
var dataset_request = {
dataset_id : request_dictionary.id,
start : request_dictionary.start,
end : request_dictionary.end,
columns : column_list
}
// fetch data
var self = this;
this._fetch(dataset_request, function(results) {
// add results to cache
for (var i in results) {
var column = column_list[i];
var block_id = self._block_id(request_dictionary, column);
self.cache[block_id] = results[i];
}
// fill dictionary from cache
self._fill_from_cache(request_dictionary);
// trigger callback
callback(request_dictionary);
});
},
// convert
_fill_from_cache: function(request_dictionary) {
// log
console.debug('Datasets::_fill_from_cache() - Filling request from cache.');
// collect all data into the defined groups
for (var i in request_dictionary.groups) {
// get group
var group = request_dictionary.groups[i];
// create array for values
group.values = [];
// fill value
for (var key in group.columns) {
// get column
var column = group.columns[key];
// get block
var block_id = this._block_id(request_dictionary, column.index);
var column_data = this.cache[block_id];
// go through column
for (k in column_data) {
// initialize value
var value = group.values[k];
if (value === undefined) {
// create new value field
value = {
x : parseInt(k) + request_dictionary.start
}
// add to group
group.values[k] = value;
};
// get/fix value
var v = column_data[k];
if (isNaN(v) && !column.is_label) {
v = 0;
}
// add to dict
value[key] = v;
}
}
}
},
// fetch data columns into dataset object
_fetch: function(options, callback) {
_fetch: function(dataset_request, callback) {
// set offset
var offset = options.start ? options.start : 0;
var offset = dataset_request.start ? dataset_request.start : 0;
// set limit
var limit = Math.abs(options.end - options.start);
var limit = Math.abs(dataset_request.end - dataset_request.start);
var query_limit = this.app.config.get('query_limit');
if (!limit || limit > query_limit) {
limit = query_limit;
}
// check length
var n_columns = 0;
if (dataset_request.columns) {
n_columns = dataset_request.columns.length;
console.debug('Datasets::_fetch() - Fetching ' + n_columns + ' column(s)');
}
if (n_columns == 0) {
console.debug('Datasets::_fetch() - No columns requested');
}
// get column indices
var index_string = '';
var index_map = {};
var index_count = 0;
for (var i in options.groups) {
var group = options.groups[i];
for (var key in group.columns) {
var column = group.columns[key];
// add to index string
index_string += column + ',';
// add to dictionary
index_map[column] = index_count;
// increase counter
index_count++;
}
}
if (index_count == 0) {
callback({});
return;
}
index_string = index_string.substring(0, index_string.length - 1);
// initialize result dictionary
var result = options.groups.slice(0);
for (var i in result) {
result[i].values = [];
var column_string = '';
for (var i in dataset_request.columns) {
column_string += dataset_request.columns[i] + ',';
}
column_string = column_string.substring(0, column_string.length - 1);
// make request
var self = this;
Utils.request('GET', config.root + 'api/datasets/' + options.id, {
Utils.request('GET', config.root + 'api/datasets/' + dataset_request.dataset_id, {
data_type : 'raw_data',
provider : 'dataset-column',
limit : limit,
offset : offset,
indeces : index_string
indeces : column_string
}, function(response) {
// initialize result dictionary
var result = new Array(n_columns);
for (var i = 0; i < n_columns; i++) {
result[i] = [];
}
// loop through rows
for (var i in response.data) {
@@ -108,41 +228,23 @@ return Backbone.Collection.extend(
var row = response.data[i];
// collect all data into the defined groups
for (var j in options.groups) {
for (var j in row) {
// get group
var group = options.groups[j];
// initialize value
var value = {
x : parseInt(i) + offset
};
// fill value
for (var key in group.columns) {
// get column
var column = group.columns[key];
// identify column
var index = index_map[column];
// read value from row
var v = row[index];
if(isNaN(v) || !v) {
v = 0;
}
// add value to dictionary
value[key] = v;
var v = row[j];
if (v !== undefined && v != 2147483647) {
// add to result
result[j].push(v);
}
// add to result
result[j].values.push(value);
}
}
// log
console.debug('Datasets::_fetch() - Fetching complete.');
// callback
callback(result);
});
}
);
}
});
config/plugins/visualizations/charts/static/library/deferred.js
+14 -16
View File
@@ -59,26 +59,24 @@ return Backbone.Model.extend(
// unregister process
done: function(id) {
// delete tag
delete this.process[id];
// decrease process counter
this.counter--;
// log
console.debug('Deferred:done() - Unregistering ' + id);
// trigger change
this.trigger('refresh');
if (this.process[id]) {
// delete tag
delete this.process[id];
// decrease process counter
this.counter--;
// log
console.debug('Deferred:done() - Unregistering ' + id);
// trigger change
this.trigger('refresh');
}
},
// ready
ready: function() {
if (this.counter == 0) {
return true;
} else {
return false;
}
return (this.counter == 0);
}
});
config/plugins/visualizations/charts/static/library/jobs.js
+68 -42
View File
@@ -13,12 +13,33 @@ return Backbone.Model.extend(
this.options = Utils.merge(options, this.optionsDefault);
},
// request job results
request: function(chart, settings_string, columns_string, success, error) {
// link this
var self = this;
// set chart state
chart.state('wait', 'Requesting job results...');
// get dataset job id if already set
var dataset_id_job = chart.get('dataset_id_job');
if (dataset_id_job != '') {
// wait for job completion
self._wait(chart, success, error);
} else {
// post job
self._submit(chart, settings_string, columns_string, success, error);
}
},
// clean
cleanup: function(chart) {
// link this
var self = this;
// cleanup previous dataset file
var previous = chart.get('dataset_id_job');
if (previous != '') {
var self = this;
Utils.request('PUT', config.root + 'api/histories/none/contents/' + previous, { deleted: true }, function() {
// update galaxy history
self._refreshHdas();
@@ -30,26 +51,26 @@ return Backbone.Model.extend(
},
// create job
submit: function(chart, settings_string, columns_string, success, error) {
_submit: function(chart, settings_string, columns_string, success, error) {
// link this
var self = this;
// backup chart details
var chart_id = chart.id;
var chart_type = chart.get('type');
var chart_id = chart.id;
var chart_type = chart.get('type');
// get chart settings
var chart_settings = this.app.types.get(chart_type);
// configure tool
data = {
'tool_id' : 'chartskit',
'tool_id' : 'charts',
'inputs' : {
'input' : {
'id' : chart.get('dataset_id'),
'src' : 'hda'
},
'module' : chart_type,
'module' : chart_settings.execute,
'columns' : columns_string,
'settings' : settings_string
}
@@ -75,43 +96,16 @@ return Backbone.Model.extend(
var job = response.outputs[0];
// check dataset
chart.state('wait', 'Job has been queued...');
chart.state('wait', 'Your job has been queued. You may close the browser window. The job will run in the background.');
// backup resulting dataset id
chart.set('dataset_id_job', job.id);
// save
this.app.storage.save();
// wait for job completion
self._loop(job.id, function(job) {
switch (job.state) {
case 'ok':
// update state
chart.state('wait', 'Job completed successfully...');
// execute success
success(job);
// stop loop
return true;
case 'error':
// update state
chart.state('failed', 'Job has failed. Please check the history for details.');
// call error
error && error();
// stop loop
return true;
case 'running':
// wait
chart.state('wait', 'Job is running...');
// continue loop
return false;
}
});
self._wait(chart, success, error);
}
},
// error handler
@@ -120,8 +114,9 @@ return Backbone.Model.extend(
if (response && response.message && response.message.data && response.message.data.input) {
message = response.message.data.input + '.';
}
// update state
chart.state('failed', 'This visualization requires the Charts-Kit. Please make sure it is installed. ' + message);
chart.state('failed', 'This visualization requires the \'charts\' tool. Please make sure it is installed. ' + message);
// call error
error && error();
@@ -131,11 +126,42 @@ return Backbone.Model.extend(
},
// request job details
_loop: function(id, callback) {
_wait: function(chart, success, error) {
var self = this;
Utils.request('GET', config.root + 'api/datasets/' + id, {}, function(job) {
if (!callback(job)) {
setTimeout(function() { self._loop(id, callback); }, self.app.config.get('query_timeout'));
Utils.request('GET', config.root + 'api/datasets/' + chart.get('dataset_id_job'), {}, function(dataset) {
// check dataset state
var ready = false;
switch (dataset.state) {
case 'ok':
// update state
chart.state('wait', 'Job completed successfully...');
// execute success
success && success(dataset);
// stop loop
ready = true;
break;
case 'error':
// update state
chart.state('failed', 'Job has failed. Please check the history for details.');
// call error
error && error(dataset);
// stop loop
ready = true;
break;
case 'running':
// wait
chart.state('wait', 'Your job is running. You may close the browser window. The job will continue in the background.');
}
// wait and try again
if (!ready) {
setTimeout(function() {
self._wait(chart, success, error);
}, self.app.config.get('query_timeout'));
}
});
},
@@ -144,7 +170,7 @@ return Backbone.Model.extend(
_refreshHdas: function() {
// update galaxy history
if (Galaxy && Galaxy.currHistoryPanel) {
Galaxy.currHistoryPanel.refreshHdas();
Galaxy.currHistoryPanel.refreshContents();
}
}
});
config/plugins/visualizations/charts/static/library/ui-table.js
+12 -8
View File
@@ -62,11 +62,14 @@ var View = Backbone.View.extend(
},
// add row cell
add: function($el, width) {
add: function($el, width, align) {
var wrapper = $('<td></td>');
if (width) {
wrapper.css('width', width);
}
if (align) {
wrapper.css('text-align', align);
}
wrapper.append($el);
this.row.append(wrapper);
},
@@ -159,13 +162,14 @@ var View = Backbone.View.extend(
// get values
var old_value = this.value();
var new_value = $(e.target).closest('tr').attr('id');
// check equality
if (new_value && old_value != new_value) {
if (this.options.onconfirm) {
this.options.onconfirm(new_value);
} else {
this.value(new_value);
if (new_value != ''){
// check equality
if (new_value && old_value != new_value) {
if (this.options.onconfirm) {
this.options.onconfirm(new_value);
} else {
this.value(new_value);
}
}
}
},
config/plugins/visualizations/charts/static/library/ui.js
+106 -46
View File
@@ -1,12 +1,36 @@
// dependencies
define(['utils/utils', 'plugin/library/ui-select'], function(Utils, Select) {
// plugin
var Image = Backbone.View.extend(
{
// options
optionsDefault: {
url : ''
},
// initialize
initialize : function(options) {
// get options
this.options = Utils.merge(options, this.optionsDefault);
// create new element
this.setElement(this._template(this.options));
},
// template
_template: function(options) {
return '<img src="' + options.url + '"/>';
}
});
// plugin
var Label = Backbone.View.extend(
{
// options
optionsDefault: {
title : ''
title : '',
cls : ''
},
// initialize
@@ -25,7 +49,41 @@ var Label = Backbone.View.extend(
// template
_template: function(options) {
return '<label><b>' + options.title + '</b></label>';
return '<label class="' + options.cls + '"><b>' + options.title + '</b></label>';
},
// value
value: function() {
return options.title;
}
});
// plugin
var Text = Backbone.View.extend(
{
// options
optionsDefault: {
title : '',
cls : ''
},
// initialize
initialize : function(options) {
// get options
this.options = Utils.merge(options, this.optionsDefault);
// create new element
this.setElement(this._template(this.options));
},
// title
title: function(new_title) {
this.$el.html(new_title);
},
// template
_template: function(options) {
return '<div class="' + options.cls + '">' + options.title + '</div>';
},
// value
@@ -73,39 +131,6 @@ var Button = Backbone.View.extend(
}
});
// plugin
var Icon = Backbone.View.extend(
{
// options
optionsDefault: {
float : 'right',
icon : '',
tooltip : '',
placement : 'bottom',
title : ''
},
// initialize
initialize : function(options) {
// get options
this.options = Utils.merge(options, this.optionsDefault);
// create new element
this.setElement(this._template(this.options));
// add tooltip
$(this.el).tooltip({title: options.tooltip, placement: 'bottom'});
},
// element
_template: function(options) {
return '<div>' +
'<span class="fa ' + options.icon + '" style="font-size: 1.2em;"/>&nbsp;' +
options.title +
'</div>';
}
});
// plugin
var ButtonIcon = Backbone.View.extend(
{
@@ -159,6 +184,39 @@ var ButtonIcon = Backbone.View.extend(
}
});
// plugin
var Icon = Backbone.View.extend(
{
// options
optionsDefault: {
float : 'right',
icon : '',
tooltip : '',
placement : 'bottom',
title : ''
},
// initialize
initialize : function(options) {
// get options
this.options = Utils.merge(options, this.optionsDefault);
// create new element
this.setElement(this._template(this.options));
// add tooltip
$(this.el).tooltip({title: options.tooltip, placement: 'bottom'});
},
// element
_template: function(options) {
return '<div>' +
'<span class="fa ' + options.icon + '" style="font-size: 1.2em;"/>&nbsp;' +
options.title +
'</div>';
}
});
// plugin
var Anchor = Backbone.View.extend(
{
@@ -517,16 +575,18 @@ var Input = Backbone.View.extend(
// return
return {
Label : Label,
Button : Button,
Icon : Icon,
ButtonIcon : ButtonIcon,
Input : Input,
Anchor : Anchor,
Message : Message,
Searchbox : Searchbox,
Title : Title,
Select : Select,
ButtonMenu : ButtonMenu
Label : Label,
Image : Image,
Button : Button,
Icon : Icon,
ButtonIcon : ButtonIcon,
Input : Input,
Anchor : Anchor,
Message : Message,
Searchbox : Searchbox,
Title : Title,
Text : Text,
Select : Select,
ButtonMenu : ButtonMenu
}
});
config/plugins/visualizations/charts/static/models/config.js
+1 -1
View File
@@ -6,7 +6,7 @@ return Backbone.Model.extend(
{
// options
defaults : {
query_limit : 1000,
query_limit : 5000,
query_timeout : 500
}
});
config/plugins/visualizations/charts/static/plugins/heatmap/heatmap.css
+76
View File
@@ -0,0 +1,76 @@
<style>
/* disable text selection */
svg *::selection {
background : transparent;
}
svg *::-moz-selection {
background:transparent;
}
svg *::-webkit-selection {
background:transparent;
}
rect.selection {
stroke : #333;
stroke-dasharray: 4px;
stroke-opacity : 0.5;
fill : transparent;
}
rect.cell-border {
stroke: #eee;
stroke-width:0.3px;
}
rect.cell-selected {
stroke: rgb(51,102,153);
stroke-width:0.5px;
}
rect.cell-hover {
stroke: #F00;
stroke-width:0.3px;
}
text.mono {
font-size: 9pt;
font-family: Consolas, courier;
fill: #aaa;
}
text.text-selected {
fill: #000;
}
text.text-highlight {
fill: #c00;
}
text.text-hover {
fill: #00C;
}
#heatmap-tooltip {
position: absolute;
width: 200px;
height: auto;
padding: 10px;
background-color: white;
-webkit-border-radius: 10px;
-moz-border-radius: 10px;
border-radius: 10px;
-webkit-box-shadow: 4px 4px 10px rgba(0, 0, 0, 0.4);
-moz-box-shadow: 4px 4px 10px rgba(0, 0, 0, 0.4);
box-shadow: 4px 4px 10px rgba(0, 0, 0, 0.4);
pointer-events: none;
}
#heatmap-tooltip.hidden {
display: none;
}
#heatmap-tooltip p {
margin: 0;
font-family: sans-serif;
font-size: 12px;
line-height: 20px;
}
config/plugins/visualizations/charts/static/plugins/highcharts/highcharts-more.js
+51
View File
@@ -0,0 +1,51 @@
/*
Highcharts JS v3.0.10 (2014-03-10)
(c) 2009-2014 Torstein Honsi
License: www.highcharts.com/license
*/
(function(l,C){function J(a,b,c){this.init.call(this,a,b,c)}var N=l.arrayMin,O=l.arrayMax,t=l.each,y=l.extend,o=l.merge,P=l.map,q=l.pick,w=l.pInt,p=l.getOptions().plotOptions,h=l.seriesTypes,x=l.extendClass,K=l.splat,r=l.wrap,L=l.Axis,z=l.Tick,G=l.Point,Q=l.Pointer,R=l.TrackerMixin,S=l.CenteredSeriesMixin,s=l.Series,v=Math,D=v.round,A=v.floor,T=v.max,U=l.Color,u=function(){};y(J.prototype,{init:function(a,b,c){var d=this,f=d.defaultOptions;d.chart=b;if(b.angular)f.background={};d.options=a=o(f,a);
(a=a.background)&&t([].concat(K(a)).reverse(),function(a){var e=a.backgroundColor,a=o(d.defaultBackgroundOptions,a);if(e)a.backgroundColor=e;a.color=a.backgroundColor;c.options.plotBands.unshift(a)})},defaultOptions:{center:["50%","50%"],size:"85%",startAngle:0},defaultBackgroundOptions:{shape:"circle",borderWidth:1,borderColor:"silver",backgroundColor:{linearGradient:{x1:0,y1:0,x2:0,y2:1},stops:[[0,"#FFF"],[1,"#DDD"]]},from:Number.MIN_VALUE,innerRadius:0,to:Number.MAX_VALUE,outerRadius:"105%"}});
var F=L.prototype,z=z.prototype,V={getOffset:u,redraw:function(){this.isDirty=!1},render:function(){this.isDirty=!1},setScale:u,setCategories:u,setTitle:u},M={isRadial:!0,defaultRadialGaugeOptions:{labels:{align:"center",x:0,y:null},minorGridLineWidth:0,minorTickInterval:"auto",minorTickLength:10,minorTickPosition:"inside",minorTickWidth:1,tickLength:10,tickPosition:"inside",tickWidth:2,title:{rotation:0},zIndex:2},defaultRadialXOptions:{gridLineWidth:1,labels:{align:null,distance:15,x:0,y:null},
maxPadding:0,minPadding:0,showLastLabel:!1,tickLength:0},defaultRadialYOptions:{gridLineInterpolation:"circle",labels:{align:"right",x:-3,y:-2},showLastLabel:!1,title:{x:4,text:null,rotation:90}},setOptions:function(a){a=this.options=o(this.defaultOptions,this.defaultRadialOptions,a);if(!a.plotBands)a.plotBands=[]},getOffset:function(){F.getOffset.call(this);this.chart.axisOffset[this.side]=0;this.center=this.pane.center=S.getCenter.call(this.pane)},getLinePath:function(a,b){var c=this.center,b=q(b,
c[2]/2-this.offset);return this.chart.renderer.symbols.arc(this.left+c[0],this.top+c[1],b,b,{start:this.startAngleRad,end:this.endAngleRad,open:!0,innerR:0})},setAxisTranslation:function(){F.setAxisTranslation.call(this);if(this.center)this.transA=this.isCircular?(this.endAngleRad-this.startAngleRad)/(this.max-this.min||1):this.center[2]/2/(this.max-this.min||1),this.minPixelPadding=this.isXAxis?this.transA*this.minPointOffset:0},beforeSetTickPositions:function(){this.autoConnect&&(this.max+=this.categories&&
1||this.pointRange||this.closestPointRange||0)},setAxisSize:function(){F.setAxisSize.call(this);if(this.isRadial){this.center=this.pane.center=l.CenteredSeriesMixin.getCenter.call(this.pane);if(this.isCircular)this.sector=this.endAngleRad-this.startAngleRad;this.len=this.width=this.height=this.center[2]*q(this.sector,1)/2}},getPosition:function(a,b){if(!this.isCircular)b=this.translate(a),a=this.min;return this.postTranslate(this.translate(a),q(b,this.center[2]/2)-this.offset)},postTranslate:function(a,
b){var c=this.chart,d=this.center,a=this.startAngleRad+a;return{x:c.plotLeft+d[0]+Math.cos(a)*b,y:c.plotTop+d[1]+Math.sin(a)*b}},getPlotBandPath:function(a,b,c){var d=this.center,f=this.startAngleRad,g=d[2]/2,e=[q(c.outerRadius,"100%"),c.innerRadius,q(c.thickness,10)],k=/%$/,n,m=this.isCircular;this.options.gridLineInterpolation==="polygon"?d=this.getPlotLinePath(a).concat(this.getPlotLinePath(b,!0)):(m||(e[0]=this.translate(a),e[1]=this.translate(b)),e=P(e,function(a){k.test(a)&&(a=w(a,10)*g/100);
return a}),c.shape==="circle"||!m?(a=-Math.PI/2,b=Math.PI*1.5,n=!0):(a=f+this.translate(a),b=f+this.translate(b)),d=this.chart.renderer.symbols.arc(this.left+d[0],this.top+d[1],e[0],e[0],{start:a,end:b,innerR:q(e[1],e[0]-e[2]),open:n}));return d},getPlotLinePath:function(a,b){var c=this.center,d=this.chart,f=this.getPosition(a),g,e,k;this.isCircular?k=["M",c[0]+d.plotLeft,c[1]+d.plotTop,"L",f.x,f.y]:this.options.gridLineInterpolation==="circle"?(a=this.translate(a))&&(k=this.getLinePath(0,a)):(g=
d.xAxis[0],k=[],a=this.translate(a),c=g.tickPositions,g.autoConnect&&(c=c.concat([c[0]])),b&&(c=[].concat(c).reverse()),t(c,function(c,b){e=g.getPosition(c,a);k.push(b?"L":"M",e.x,e.y)}));return k},getTitlePosition:function(){var a=this.center,b=this.chart,c=this.options.title;return{x:b.plotLeft+a[0]+(c.x||0),y:b.plotTop+a[1]-{high:0.5,middle:0.25,low:0}[c.align]*a[2]+(c.y||0)}}};r(F,"init",function(a,b,c){var i;var d=b.angular,f=b.polar,g=c.isX,e=d&&g,k,n;n=b.options;var m=c.pane||0;if(d){if(y(this,
e?V:M),k=!g)this.defaultRadialOptions=this.defaultRadialGaugeOptions}else if(f)y(this,M),this.defaultRadialOptions=(k=g)?this.defaultRadialXOptions:o(this.defaultYAxisOptions,this.defaultRadialYOptions);a.call(this,b,c);if(!e&&(d||f)){a=this.options;if(!b.panes)b.panes=[];this.pane=(i=b.panes[m]=b.panes[m]||new J(K(n.pane)[m],b,this),m=i);m=m.options;b.inverted=!1;n.chart.zoomType=null;this.startAngleRad=b=(m.startAngle-90)*Math.PI/180;this.endAngleRad=n=(q(m.endAngle,m.startAngle+360)-90)*Math.PI/
180;this.offset=a.offset||0;if((this.isCircular=k)&&c.max===C&&n-b===2*Math.PI)this.autoConnect=!0}});r(z,"getPosition",function(a,b,c,d,f){var g=this.axis;return g.getPosition?g.getPosition(c):a.call(this,b,c,d,f)});r(z,"getLabelPosition",function(a,b,c,d,f,g,e,k,n){var m=this.axis,i=g.y,j=g.align,h=(m.translate(this.pos)+m.startAngleRad+Math.PI/2)/Math.PI*180%360;m.isRadial?(a=m.getPosition(this.pos,m.center[2]/2+q(g.distance,-25)),g.rotation==="auto"?d.attr({rotation:h}):i===null&&(i=m.chart.renderer.fontMetrics(d.styles.fontSize).b-
d.getBBox().height/2),j===null&&(j=m.isCircular?h>20&&h<160?"left":h>200&&h<340?"right":"center":"center",d.attr({align:j})),a.x+=g.x,a.y+=i):a=a.call(this,b,c,d,f,g,e,k,n);return a});r(z,"getMarkPath",function(a,b,c,d,f,g,e){var k=this.axis;k.isRadial?(a=k.getPosition(this.pos,k.center[2]/2+d),b=["M",b,c,"L",a.x,a.y]):b=a.call(this,b,c,d,f,g,e);return b});p.arearange=o(p.area,{lineWidth:1,marker:null,threshold:null,tooltip:{pointFormat:'<span style="color:{series.color}">{series.name}</span>: <b>{point.low}</b> - <b>{point.high}</b><br/>'},
trackByArea:!0,dataLabels:{verticalAlign:null,xLow:0,xHigh:0,yLow:0,yHigh:0}});h.arearange=x(h.area,{type:"arearange",pointArrayMap:["low","high"],toYData:function(a){return[a.low,a.high]},pointValKey:"low",getSegments:function(){var a=this;t(a.points,function(b){if(!a.options.connectNulls&&(b.low===null||b.high===null))b.y=null;else if(b.low===null&&b.high!==null)b.y=b.high});s.prototype.getSegments.call(this)},translate:function(){var a=this.yAxis;h.area.prototype.translate.apply(this);t(this.points,
function(b){var c=b.low,d=b.high,f=b.plotY;d===null&&c===null?b.y=null:c===null?(b.plotLow=b.plotY=null,b.plotHigh=a.translate(d,0,1,0,1)):d===null?(b.plotLow=f,b.plotHigh=null):(b.plotLow=f,b.plotHigh=a.translate(d,0,1,0,1))})},getSegmentPath:function(a){var b,c=[],d=a.length,f=s.prototype.getSegmentPath,g,e;e=this.options;var k=e.step;for(b=HighchartsAdapter.grep(a,function(a){return a.plotLow!==null});d--;)g=a[d],g.plotHigh!==null&&c.push({plotX:g.plotX,plotY:g.plotHigh});a=f.call(this,b);if(k)k===
!0&&(k="left"),e.step={left:"right",center:"center",right:"left"}[k];c=f.call(this,c);e.step=k;e=[].concat(a,c);c[0]="L";this.areaPath=this.areaPath.concat(a,c);return e},drawDataLabels:function(){var a=this.data,b=a.length,c,d=[],f=s.prototype,g=this.options.dataLabels,e,k=this.chart.inverted;if(g.enabled||this._hasPointLabels){for(c=b;c--;)e=a[c],e.y=e.high,e._plotY=e.plotY,e.plotY=e.plotHigh,d[c]=e.dataLabel,e.dataLabel=e.dataLabelUpper,e.below=!1,k?(g.align="left",g.x=g.xHigh):g.y=g.yHigh;f.drawDataLabels&&
f.drawDataLabels.apply(this,arguments);for(c=b;c--;)e=a[c],e.dataLabelUpper=e.dataLabel,e.dataLabel=d[c],e.y=e.low,e.plotY=e._plotY,e.below=!0,k?(g.align="right",g.x=g.xLow):g.y=g.yLow;f.drawDataLabels&&f.drawDataLabels.apply(this,arguments)}},alignDataLabel:function(){h.column.prototype.alignDataLabel.apply(this,arguments)},getSymbol:h.column.prototype.getSymbol,drawPoints:u});p.areasplinerange=o(p.arearange);h.areasplinerange=x(h.arearange,{type:"areasplinerange",getPointSpline:h.spline.prototype.getPointSpline});
(function(){var a=h.column.prototype;p.columnrange=o(p.column,p.arearange,{lineWidth:1,pointRange:null});h.columnrange=x(h.arearange,{type:"columnrange",translate:function(){var b=this,c=b.yAxis,d;a.translate.apply(b);t(b.points,function(a){var g=a.shapeArgs,e=b.options.minPointLength,k;a.plotHigh=d=c.translate(a.high,0,1,0,1);a.plotLow=a.plotY;k=d;a=a.plotY-d;a<e&&(e-=a,a+=e,k-=e/2);g.height=a;g.y=k})},trackerGroups:["group","dataLabels"],drawGraph:u,pointAttrToOptions:a.pointAttrToOptions,drawPoints:a.drawPoints,
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config/plugins/visualizations/charts/static/plugins/highcharts/highcharts.js
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View File
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s;if(n)if(q)n.animate({d:q},null,n.onGetPath);else{if(n.hide(),n.onGetPath=function(){n.show()},g)a.label=g=g.destroy()}else if(q&&q.length&&(a.svgElem=n=v.path(q).attr(d).add(),P))for(p in e=function(b){n.on(b,function(c){P[b].apply(a,[c])})},P)e(p);if(f&&r(f.text)&&q&&q.length&&b.width>0&&b.height>0){f=w({align:c&&k&&"center",x:c?!k&&4:10,verticalAlign:!c&&k&&"middle",y:c?k?16:10:k?6:-4,rotation:c&&!k&&90},f);if(!g)a.label=g=v.text(f.text,0,0,f.useHTML).attr({align:f.textAlign||f.align,rotation:f.rotation,
zIndex:s}).css(f.style).add();b=[q[1],q[4],o(q[6],q[1])];q=[q[2],q[5],o(q[7],q[2])];c=Na(b);k=Na(q);g.align(f,!1,{x:c,y:k,width:Ba(b)-c,height:Ba(q)-k});g.show()}else g&&g.hide();return a},destroy:function(){ia(this.axis.plotLinesAndBands,this);delete this.axis;Oa(this)}};ka.prototype={defaultOptions:{dateTimeLabelFormats:{millisecond:"%H:%M:%S.%L",second:"%H:%M:%S",minute:"%H:%M",hour:"%H:%M",day:"%e. %b",week:"%e. %b",month:"%b '%y",year:"%Y"},endOnTick:!1,gridLineColor:"#C0C0C0",labels:F,lineColor:"#C0D0E0",
lineWidth:1,minPadding:0.01,maxPadding:0.01,minorGridLineColor:"#E0E0E0",minorGridLineWidth:1,minorTickColor:"#A0A0A0",minorTickLength:2,minorTickPosition:"outside",startOfWeek:1,startOnTick:!1,tickColor:"#C0D0E0",tickLength:5,tickmarkPlacement:"between",tickPixelInterval:100,tickPosition:"outside",tickWidth:1,title:{align:"middle",style:{color:"#4d759e",fontWeight:"bold"}},type:"linear"},defaultYAxisOptions:{endOnTick:!0,gridLineWidth:1,tickPixelInterval:72,showLastLabel:!0,labels:{x:-8,y:3},lineWidth:0,
maxPadding:0.05,minPadding:0.05,startOnTick:!0,tickWidth:0,title:{rotation:270,text:"Values"},stackLabels:{enabled:!1,formatter:function(){return Ga(this.total,-1)},style:F.style}},defaultLeftAxisOptions:{labels:{x:-8,y:null},title:{rotation:270}},defaultRightAxisOptions:{labels:{x:8,y:null},title:{rotation:90}},defaultBottomAxisOptions:{labels:{x:0,y:14},title:{rotation:0}},defaultTopAxisOptions:{labels:{x:0,y:-5},title:{rotation:0}},init:function(a,b){var c=b.isX;this.horiz=a.inverted?!c:c;this.coll=
(this.isXAxis=c)?"xAxis":"yAxis";this.opposite=b.opposite;this.side=b.side||(this.horiz?this.opposite?0:2:this.opposite?1:3);this.setOptions(b);var d=this.options,e=d.type;this.labelFormatter=d.labels.formatter||this.defaultLabelFormatter;this.userOptions=b;this.minPixelPadding=0;this.chart=a;this.reversed=d.reversed;this.zoomEnabled=d.zoomEnabled!==!1;this.categories=d.categories||e==="category";this.names=[];this.isLog=e==="logarithmic";this.isDatetimeAxis=e==="datetime";this.isLinked=r(d.linkedTo);
this.tickmarkOffset=this.categories&&d.tickmarkPlacement==="between"?0.5:0;this.ticks={};this.labelEdge=[];this.minorTicks={};this.plotLinesAndBands=[];this.alternateBands={};this.len=0;this.minRange=this.userMinRange=d.minRange||d.maxZoom;this.range=d.range;this.offset=d.offset||0;this.stacks={};this.oldStacks={};this.min=this.max=null;this.crosshair=o(d.crosshair,na(a.options.tooltip.crosshairs)[c?0:1],!1);var f,d=this.options.events;va(this,a.axes)===-1&&(c&&!this.isColorAxis?a.axes.splice(a.xAxis.length,
0,this):a.axes.push(this),a[this.coll].push(this));this.series=this.series||[];if(a.inverted&&c&&this.reversed===u)this.reversed=!0;this.removePlotLine=this.removePlotBand=this.removePlotBandOrLine;for(f in d)C(this,f,d[f]);if(this.isLog)this.val2lin=za,this.lin2val=ha},setOptions:function(a){this.options=w(this.defaultOptions,this.isXAxis?{}:this.defaultYAxisOptions,[this.defaultTopAxisOptions,this.defaultRightAxisOptions,this.defaultBottomAxisOptions,this.defaultLeftAxisOptions][this.side],w(L[this.coll],
a))},defaultLabelFormatter:function(){var a=this.axis,b=this.value,c=a.categories,d=this.dateTimeLabelFormat,e=L.lang.numericSymbols,f=e&&e.length,g,h=a.options.labels.format,a=a.isLog?b:a.tickInterval;if(h)g=Ia(h,this);else if(c)g=b;else if(d)g=bb(d,b);else if(f&&a>=1E3)for(;f--&&g===u;)c=Math.pow(1E3,f+1),a>=c&&e[f]!==null&&(g=Ga(b/c,-1)+e[f]);g===u&&(g=b>=1E4?Ga(b,0):Ga(b,-1,u,""));return g},getSeriesExtremes:function(){var a=this,b=a.chart;a.hasVisibleSeries=!1;a.dataMin=a.dataMax=null;a.buildStacks&&
a.buildStacks();p(a.series,function(c){if(c.visible||!b.options.chart.ignoreHiddenSeries){var d;d=c.options.threshold;var e;a.hasVisibleSeries=!0;a.isLog&&d<=0&&(d=null);if(a.isXAxis){if(d=c.xData,d.length)a.dataMin=E(o(a.dataMin,d[0]),Na(d)),a.dataMax=t(o(a.dataMax,d[0]),Ba(d))}else{c.getExtremes();e=c.dataMax;c=c.dataMin;if(r(c)&&r(e))a.dataMin=E(o(a.dataMin,c),c),a.dataMax=t(o(a.dataMax,e),e);if(r(d))if(a.dataMin>=d)a.dataMin=d,a.ignoreMinPadding=!0;else if(a.dataMax<d)a.dataMax=d,a.ignoreMaxPadding=
!0}}})},translate:function(a,b,c,d,e,f){var g=1,h=0,i=d?this.oldTransA:this.transA,d=d?this.oldMin:this.min,j=this.minPixelPadding,e=(this.options.ordinal||this.isLog&&e)&&this.lin2val;if(!i)i=this.transA;if(c)g*=-1,h=this.len;this.reversed&&(g*=-1,h-=g*(this.sector||this.len));b?(a=a*g+h,a-=j,a=a/i+d,e&&(a=this.lin2val(a))):(e&&(a=this.val2lin(a)),f==="between"&&(f=0.5),a=g*(a-d)*i+h+g*j+(ya(f)?i*f*this.pointRange:0));return a},toPixels:function(a,b){return this.translate(a,!1,!this.horiz,null,!0)+
(b?0:this.pos)},toValue:function(a,b){return this.translate(a-(b?0:this.pos),!0,!this.horiz,null,!0)},getPlotLinePath:function(a,b,c,d,e){var f=this.chart,g=this.left,h=this.top,i,j,k=c&&f.oldChartHeight||f.chartHeight,l=c&&f.oldChartWidth||f.chartWidth,m;i=this.transB;e=o(e,this.translate(a,null,null,c));a=c=v(e+i);i=j=v(k-e-i);if(isNaN(e))m=!0;else if(this.horiz){if(i=h,j=k-this.bottom,a<g||a>g+this.width)m=!0}else if(a=g,c=l-this.right,i<h||i>h+this.height)m=!0;return m&&!d?null:f.renderer.crispLine(["M",
a,i,"L",c,j],b||1)},getLinearTickPositions:function(a,b,c){for(var d,b=aa(S(b/a)*a),c=aa(Ka(c/a)*a),e=[];b<=c;){e.push(b);b=aa(b+a);if(b===d)break;d=b}return e},getMinorTickPositions:function(){var a=this.options,b=this.tickPositions,c=this.minorTickInterval,d=[],e;if(this.isLog){e=b.length;for(a=1;a<e;a++)d=d.concat(this.getLogTickPositions(c,b[a-1],b[a],!0))}else if(this.isDatetimeAxis&&a.minorTickInterval==="auto")d=d.concat(this.getTimeTicks(this.normalizeTimeTickInterval(c),this.min,this.max,
a.startOfWeek)),d[0]<this.min&&d.shift();else for(b=this.min+(b[0]-this.min)%c;b<=this.max;b+=c)d.push(b);return d},adjustForMinRange:function(){var a=this.options,b=this.min,c=this.max,d,e=this.dataMax-this.dataMin>=this.minRange,f,g,h,i,j;if(this.isXAxis&&this.minRange===u&&!this.isLog)r(a.min)||r(a.max)?this.minRange=null:(p(this.series,function(a){i=a.xData;for(g=j=a.xIncrement?1:i.length-1;g>0;g--)if(h=i[g]-i[g-1],f===u||h<f)f=h}),this.minRange=E(f*5,this.dataMax-this.dataMin));if(c-b<this.minRange){var k=
this.minRange;d=(k-c+b)/2;d=[b-d,o(a.min,b-d)];if(e)d[2]=this.dataMin;b=Ba(d);c=[b+k,o(a.max,b+k)];if(e)c[2]=this.dataMax;c=Na(c);c-b<k&&(d[0]=c-k,d[1]=o(a.min,c-k),b=Ba(d))}this.min=b;this.max=c},setAxisTranslation:function(a){var b=this,c=b.max-b.min,d=b.axisPointRange||0,e,f=0,g=0,h=b.linkedParent,i=!!b.categories,j=b.transA;if(b.isXAxis||i||d)h?(f=h.minPointOffset,g=h.pointRangePadding):p(b.series,function(a){var h=t(b.isXAxis?a.pointRange:b.axisPointRange||0,+i),j=a.options.pointPlacement,n=
a.closestPointRange;h>c&&(h=0);d=t(d,h);f=t(f,ga(j)?0:h/2);g=t(g,j==="on"?0:h);!a.noSharedTooltip&&r(n)&&(e=r(e)?E(e,n):n)}),h=b.ordinalSlope&&e?b.ordinalSlope/e:1,b.minPointOffset=f*=h,b.pointRangePadding=g*=h,b.pointRange=E(d,c),b.closestPointRange=e;if(a)b.oldTransA=j;b.translationSlope=b.transA=j=b.len/(c+g||1);b.transB=b.horiz?b.left:b.bottom;b.minPixelPadding=j*f},setTickPositions:function(a){var b=this,c=b.chart,d=b.options,e=b.isLog,f=b.isDatetimeAxis,g=b.isXAxis,h=b.isLinked,i=b.options.tickPositioner,
j=d.maxPadding,k=d.minPadding,l=d.tickInterval,m=d.minTickInterval,n=d.tickPixelInterval,q,qa=b.categories;h?(b.linkedParent=c[b.coll][d.linkedTo],c=b.linkedParent.getExtremes(),b.min=o(c.min,c.dataMin),b.max=o(c.max,c.dataMax),d.type!==b.linkedParent.options.type&&oa(11,1)):(b.min=o(b.userMin,d.min,b.dataMin),b.max=o(b.userMax,d.max,b.dataMax));if(e)!a&&E(b.min,o(b.dataMin,b.min))<=0&&oa(10,1),b.min=aa(za(b.min)),b.max=aa(za(b.max));if(b.range&&r(b.max))b.userMin=b.min=t(b.min,b.max-b.range),b.userMax=
b.max,b.range=null;b.beforePadding&&b.beforePadding();b.adjustForMinRange();if(!qa&&!b.axisPointRange&&!b.usePercentage&&!h&&r(b.min)&&r(b.max)&&(c=b.max-b.min)){if(!r(d.min)&&!r(b.userMin)&&k&&(b.dataMin<0||!b.ignoreMinPadding))b.min-=c*k;if(!r(d.max)&&!r(b.userMax)&&j&&(b.dataMax>0||!b.ignoreMaxPadding))b.max+=c*j}b.min===b.max||b.min===void 0||b.max===void 0?b.tickInterval=1:h&&!l&&n===b.linkedParent.options.tickPixelInterval?b.tickInterval=b.linkedParent.tickInterval:(b.tickInterval=o(l,qa?1:
(b.max-b.min)*n/t(b.len,n)),!r(l)&&b.len<n&&!this.isRadial&&!this.isLog&&!qa&&d.startOnTick&&d.endOnTick&&(q=!0,b.tickInterval/=4));g&&!a&&p(b.series,function(a){a.processData(b.min!==b.oldMin||b.max!==b.oldMax)});b.setAxisTranslation(!0);b.beforeSetTickPositions&&b.beforeSetTickPositions();if(b.postProcessTickInterval)b.tickInterval=b.postProcessTickInterval(b.tickInterval);if(b.pointRange)b.tickInterval=t(b.pointRange,b.tickInterval);if(!l&&b.tickInterval<m)b.tickInterval=m;if(!f&&!e&&!l)b.tickInterval=
nb(b.tickInterval,null,mb(b.tickInterval),d);b.minorTickInterval=d.minorTickInterval==="auto"&&b.tickInterval?b.tickInterval/5:d.minorTickInterval;b.tickPositions=a=d.tickPositions?[].concat(d.tickPositions):i&&i.apply(b,[b.min,b.max]);if(!a)!b.ordinalPositions&&(b.max-b.min)/b.tickInterval>t(2*b.len,200)&&oa(19,!0),a=f?b.getTimeTicks(b.normalizeTimeTickInterval(b.tickInterval,d.units),b.min,b.max,d.startOfWeek,b.ordinalPositions,b.closestPointRange,!0):e?b.getLogTickPositions(b.tickInterval,b.min,
b.max):b.getLinearTickPositions(b.tickInterval,b.min,b.max),q&&a.splice(1,a.length-2),b.tickPositions=a;if(!h)e=a[0],f=a[a.length-1],h=b.minPointOffset||0,d.startOnTick?b.min=e:b.min-h>e&&a.shift(),d.endOnTick?b.max=f:b.max+h<f&&a.pop(),a.length===1&&(d=N(b.max||1)*0.001,b.min-=d,b.max+=d)},setMaxTicks:function(){var a=this.chart,b=a.maxTicks||{},c=this.tickPositions,d=this._maxTicksKey=[this.coll,this.pos,this.len].join("-");if(!this.isLinked&&!this.isDatetimeAxis&&c&&c.length>(b[d]||0)&&this.options.alignTicks!==
!1)b[d]=c.length;a.maxTicks=b},adjustTickAmount:function(){var a=this._maxTicksKey,b=this.tickPositions,c=this.chart.maxTicks;if(c&&c[a]&&!this.isDatetimeAxis&&!this.categories&&!this.isLinked&&this.options.alignTicks!==!1&&this.min!==u){var d=this.tickAmount,e=b.length;this.tickAmount=a=c[a];if(e<a){for(;b.length<a;)b.push(aa(b[b.length-1]+this.tickInterval));this.transA*=(e-1)/(a-1);this.max=b[b.length-1]}if(r(d)&&a!==d)this.isDirty=!0}},setScale:function(){var a=this.stacks,b,c,d,e;this.oldMin=
this.min;this.oldMax=this.max;this.oldAxisLength=this.len;this.setAxisSize();e=this.len!==this.oldAxisLength;p(this.series,function(a){if(a.isDirtyData||a.isDirty||a.xAxis.isDirty)d=!0});if(e||d||this.isLinked||this.forceRedraw||this.userMin!==this.oldUserMin||this.userMax!==this.oldUserMax){if(!this.isXAxis)for(b in a)for(c in a[b])a[b][c].total=null,a[b][c].cum=0;this.forceRedraw=!1;this.getSeriesExtremes();this.setTickPositions();this.oldUserMin=this.userMin;this.oldUserMax=this.userMax;if(!this.isDirty)this.isDirty=
e||this.min!==this.oldMin||this.max!==this.oldMax}else if(!this.isXAxis){if(this.oldStacks)a=this.stacks=this.oldStacks;for(b in a)for(c in a[b])a[b][c].cum=a[b][c].total}this.setMaxTicks()},setExtremes:function(a,b,c,d,e){var f=this,g=f.chart,c=o(c,!0),e=s(e,{min:a,max:b});I(f,"setExtremes",e,function(){f.userMin=a;f.userMax=b;f.eventArgs=e;f.isDirtyExtremes=!0;c&&g.redraw(d)})},zoom:function(a,b){var c=this.dataMin,d=this.dataMax,e=this.options;this.allowZoomOutside||(r(c)&&a<=E(c,o(e.min,c))&&
(a=u),r(d)&&b>=t(d,o(e.max,d))&&(b=u));this.displayBtn=a!==u||b!==u;this.setExtremes(a,b,!1,u,{trigger:"zoom"});return!0},setAxisSize:function(){var a=this.chart,b=this.options,c=b.offsetLeft||0,d=b.offsetRight||0,e=this.horiz,f,g;this.left=g=o(b.left,a.plotLeft+c);this.top=f=o(b.top,a.plotTop);this.width=c=o(b.width,a.plotWidth-c+d);this.height=b=o(b.height,a.plotHeight);this.bottom=a.chartHeight-b-f;this.right=a.chartWidth-c-g;this.len=t(e?c:b,0);this.pos=e?g:f},getExtremes:function(){var a=this.isLog;
return{min:a?aa(ha(this.min)):this.min,max:a?aa(ha(this.max)):this.max,dataMin:this.dataMin,dataMax:this.dataMax,userMin:this.userMin,userMax:this.userMax}},getThreshold:function(a){var b=this.isLog,c=b?ha(this.min):this.min,b=b?ha(this.max):this.max;c>a||a===null?a=c:b<a&&(a=b);return this.translate(a,0,1,0,1)},autoLabelAlign:function(a){a=(o(a,0)-this.side*90+720)%360;return a>15&&a<165?"right":a>195&&a<345?"left":"center"},getOffset:function(){var a=this,b=a.chart,c=b.renderer,d=a.options,e=a.tickPositions,
f=a.ticks,g=a.horiz,h=a.side,i=b.inverted?[1,0,3,2][h]:h,j,k=0,l,m=0,n=d.title,q=d.labels,qa=0,K=b.axisOffset,s=b.clipOffset,P=[-1,1,1,-1][h],v,w=1,x=o(q.maxStaggerLines,5),y,z,H,A;a.hasData=j=a.hasVisibleSeries||r(a.min)&&r(a.max)&&!!e;a.showAxis=b=j||o(d.showEmpty,!0);a.staggerLines=a.horiz&&q.staggerLines;if(!a.axisGroup)a.gridGroup=c.g("grid").attr({zIndex:d.gridZIndex||1}).add(),a.axisGroup=c.g("axis").attr({zIndex:d.zIndex||2}).add(),a.labelGroup=c.g("axis-labels").attr({zIndex:q.zIndex||7}).addClass("highcharts-"+
a.coll.toLowerCase()+"-labels").add();if(j||a.isLinked){a.labelAlign=o(q.align||a.autoLabelAlign(q.rotation));p(e,function(b){f[b]?f[b].addLabel():f[b]=new Sa(a,b)});if(a.horiz&&!a.staggerLines&&x&&!q.rotation){for(v=a.reversed?[].concat(e).reverse():e;w<x;){j=[];y=!1;for(q=0;q<v.length;q++)z=v[q],H=(H=f[z].label&&f[z].label.getBBox())?H.width:0,A=q%w,H&&(z=a.translate(z),j[A]!==u&&z<j[A]&&(y=!0),j[A]=z+H);if(y)w++;else break}if(w>1)a.staggerLines=w}p(e,function(b){if(h===0||h===2||{1:"left",3:"right"}[h]===
a.labelAlign)qa=t(f[b].getLabelSize(),qa)});if(a.staggerLines)qa*=a.staggerLines,a.labelOffset=qa}else for(v in f)f[v].destroy(),delete f[v];if(n&&n.text&&n.enabled!==!1){if(!a.axisTitle)a.axisTitle=c.text(n.text,0,0,n.useHTML).attr({zIndex:7,rotation:n.rotation||0,align:n.textAlign||{low:"left",middle:"center",high:"right"}[n.align]}).addClass("highcharts-"+this.coll.toLowerCase()+"-title").css(n.style).add(a.axisGroup),a.axisTitle.isNew=!0;if(b)k=a.axisTitle.getBBox()[g?"height":"width"],m=o(n.margin,
g?5:10),l=n.offset;a.axisTitle[b?"show":"hide"]()}a.offset=P*o(d.offset,K[h]);a.axisTitleMargin=o(l,qa+m+(h!==2&&qa&&P*d.labels[g?"y":"x"]));K[h]=t(K[h],a.axisTitleMargin+k+P*a.offset);s[i]=t(s[i],S(d.lineWidth/2)*2)},getLinePath:function(a){var b=this.chart,c=this.opposite,d=this.offset,e=this.horiz,f=this.left+(c?this.width:0)+d,d=b.chartHeight-this.bottom-(c?this.height:0)+d;c&&(a*=-1);return b.renderer.crispLine(["M",e?this.left:f,e?d:this.top,"L",e?b.chartWidth-this.right:f,e?d:b.chartHeight-
this.bottom],a)},getTitlePosition:function(){var a=this.horiz,b=this.left,c=this.top,d=this.len,e=this.options.title,f=a?b:c,g=this.opposite,h=this.offset,i=x(e.style.fontSize||12),d={low:f+(a?0:d),middle:f+d/2,high:f+(a?d:0)}[e.align],b=(a?c+this.height:b)+(a?1:-1)*(g?-1:1)*this.axisTitleMargin+(this.side===2?i:0);return{x:a?d:b+(g?this.width:0)+h+(e.x||0),y:a?b-(g?this.height:0)+h:d+(e.y||0)}},render:function(){var a=this,b=a.horiz,c=a.reversed,d=a.chart,e=d.renderer,f=a.options,g=a.isLog,h=a.isLinked,
i=a.tickPositions,j,k=a.axisTitle,l=a.ticks,m=a.minorTicks,n=a.alternateBands,q=f.stackLabels,o=f.alternateGridColor,K=a.tickmarkOffset,t=f.lineWidth,v=d.hasRendered&&r(a.oldMin)&&!isNaN(a.oldMin),s=a.hasData,w=a.showAxis,x,y=f.labels.overflow,z=a.justifyLabels=b&&y!==!1,H;a.labelEdge.length=0;a.justifyToPlot=y==="justify";p([l,m,n],function(a){for(var b in a)a[b].isActive=!1});if(s||h)if(a.minorTickInterval&&!a.categories&&p(a.getMinorTickPositions(),function(b){m[b]||(m[b]=new Sa(a,b,"minor"));
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b){var c,d=this.chart,e=d.inverted,f=d.plotTop,g=0,h=0,i,a=na(a);c=a[0].tooltipPos;this.followPointer&&b&&(b.chartX===u&&(b=d.pointer.normalize(b)),c=[b.chartX-d.plotLeft,b.chartY-f]);c||(p(a,function(a){i=a.series.yAxis;g+=a.plotX;h+=(a.plotLow?(a.plotLow+a.plotHigh)/2:a.plotY)+(!e&&i?i.top-f:0)}),g/=a.length,h/=a.length,c=[e?d.plotWidth-h:g,this.shared&&!e&&a.length>1&&b?b.chartY-f:e?d.plotHeight-g:h]);return Ua(c,v)},getPosition:function(a,b,c){var d=this.chart,e=d.plotLeft,f=d.plotTop,g=d.plotWidth,
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d.push(a.options.footerFormat||"");return d.join("")},refresh:function(a,b){var c=this.chart,d=this.label,e=this.options,f,g,h={},i,j=[];i=e.formatter||this.defaultFormatter;var h=c.hoverPoints,k,l=this.shared;clearTimeout(this.hideTimer);this.followPointer=na(a)[0].series.tooltipOptions.followPointer;g=this.getAnchor(a,b);f=g[0];g=g[1];l&&(!a.series||!a.series.noSharedTooltip)?(c.hoverPoints=a,h&&p(h,function(a){a.setState()}),p(a,function(a){a.setState("hover");j.push(a.getLabelConfig())}),h={x:a[0].category,
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this.chart,c=b.series,d=b.tooltip,e,f,g=b.hoverPoint,h=b.hoverSeries,i,j,k=b.chartWidth,l=this.getIndex(a);if(d&&this.options.tooltip.shared&&(!h||!h.noSharedTooltip)){f=[];i=c.length;for(j=0;j<i;j++)if(c[j].visible&&c[j].options.enableMouseTracking!==!1&&!c[j].noSharedTooltip&&c[j].singularTooltips!==!0&&c[j].tooltipPoints.length&&(e=c[j].tooltipPoints[l])&&e.series)e._dist=N(l-e.clientX),k=E(k,e._dist),f.push(e);for(i=f.length;i--;)f[i]._dist>k&&f.splice(i,1);if(f.length&&f[0].clientX!==this.hoverX)d.refresh(f,
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b.tooltip,f=e&&e.shared?b.hoverPoints:d;(a=a&&e&&f)&&na(f)[0].plotX===u&&(a=!1);if(a)e.refresh(f),d&&d.setState(d.state,!0);else{if(d)d.onMouseOut();if(c)c.onMouseOut();e&&e.hide();if(this._onDocumentMouseMove)U(y,"mousemove",this._onDocumentMouseMove),this._onDocumentMouseMove=null;p(b.axes,function(a){a.hideCrosshair()});this.hoverX=null}},scaleGroups:function(a,b){var c=this.chart,d;p(c.series,function(e){d=a||e.getPlotBox();e.xAxis&&e.xAxis.zoomEnabled&&(e.group.attr(d),e.markerGroup&&(e.markerGroup.attr(d),
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l&&!this.selectionMarker&&c.panning&&b.pan(a,c.panning)}},drop:function(a){var b=this.chart,c=this.hasPinched;if(this.selectionMarker){var d={xAxis:[],yAxis:[],originalEvent:a.originalEvent||a},e=this.selectionMarker,f=e.x,g=e.y,h;if(this.hasDragged||c)p(b.axes,function(a){if(a.zoomEnabled){var b=a.horiz,c=a.toValue(b?f:g),b=a.toValue(b?f+e.width:g+e.height);!isNaN(c)&&!isNaN(b)&&(d[a.coll].push({axis:a,min:E(c,b),max:t(c,b)}),h=!0)}}),h&&I(b,"selection",d,function(a){b.zoom(s(a,c?{animation:!1}:
null))});this.selectionMarker=this.selectionMarker.destroy();c&&this.scaleGroups()}if(b)D(b.container,{cursor:b._cursor}),b.cancelClick=this.hasDragged>10,b.mouseIsDown=this.hasDragged=this.hasPinched=!1,this.pinchDown=[]},onContainerMouseDown:function(a){a=this.normalize(a);a.preventDefault&&a.preventDefault();this.dragStart(a)},onDocumentMouseUp:function(a){r(fa)&&Y[fa].pointer.drop(a)},onDocumentMouseMove:function(a){var b=this.chart,c=this.chartPosition,d=b.hoverSeries,a=this.normalize(a,c);c&&
d&&!this.inClass(a.target,"highcharts-tracker")&&!b.isInsidePlot(a.chartX-b.plotLeft,a.chartY-b.plotTop)&&this.reset()},onContainerMouseLeave:function(){var a=Y[fa];if(a)a.pointer.reset(),a.pointer.chartPosition=null;fa=null},onContainerMouseMove:function(a){var b=this.chart;fa=b.index;a=this.normalize(a);b.mouseIsDown==="mousedown"&&this.drag(a);(this.inClass(a.target,"highcharts-tracker")||b.isInsidePlot(a.chartX-b.plotLeft,a.chartY-b.plotTop))&&!b.openMenu&&this.runPointActions(a)},inClass:function(a,
b){for(var c;a;){if(c=z(a,"class"))if(c.indexOf(b)!==-1)return!0;else if(c.indexOf("highcharts-container")!==-1)return!1;a=a.parentNode}},onTrackerMouseOut:function(a){var b=this.chart.hoverSeries,c=(a=a.relatedTarget||a.toElement)&&a.point&&a.point.series;if(b&&!b.options.stickyTracking&&!this.inClass(a,"highcharts-tooltip")&&c!==b)b.onMouseOut()},onContainerClick:function(a){var b=this.chart,c=b.hoverPoint,d=b.plotLeft,e=b.plotTop,f=b.inverted,g,h,i,a=this.normalize(a);a.cancelBubble=!0;if(!b.cancelClick)c&&
this.inClass(a.target,"highcharts-tracker")?(g=this.chartPosition,h=c.plotX,i=c.plotY,s(c,{pageX:g.left+d+(f?b.plotWidth-i:h),pageY:g.top+e+(f?b.plotHeight-h:i)}),I(c.series,"click",s(a,{point:c})),b.hoverPoint&&c.firePointEvent("click",a)):(s(a,this.getCoordinates(a)),b.isInsidePlot(a.chartX-d,a.chartY-e)&&I(b,"click",a))},setDOMEvents:function(){var a=this,b=a.chart.container;b.onmousedown=function(b){a.onContainerMouseDown(b)};b.onmousemove=function(b){a.onContainerMouseMove(b)};b.onclick=function(b){a.onContainerClick(b)};
C(b,"mouseleave",a.onContainerMouseLeave);C(y,"mouseup",a.onDocumentMouseUp);if($a)b.ontouchstart=function(b){a.onContainerTouchStart(b)},b.ontouchmove=function(b){a.onContainerTouchMove(b)},C(y,"touchend",a.onDocumentTouchEnd)},destroy:function(){var a;U(this.chart.container,"mouseleave",this.onContainerMouseLeave);U(y,"mouseup",this.onDocumentMouseUp);U(y,"touchend",this.onDocumentTouchEnd);clearInterval(this.tooltipTimeout);for(a in this)this[a]=null}};s(Q.Pointer.prototype,{pinchTranslate:function(a,
b,c,d,e,f,g,h){a&&this.pinchTranslateDirection(!0,c,d,e,f,g,h);b&&this.pinchTranslateDirection(!1,c,d,e,f,g,h)},pinchTranslateDirection:function(a,b,c,d,e,f,g,h){var i=this.chart,j=a?"x":"y",k=a?"X":"Y",l="chart"+k,m=a?"width":"height",n=i["plot"+(a?"Left":"Top")],q,o,p=h||1,t=i.inverted,r=i.bounds[a?"h":"v"],v=b.length===1,s=b[0][l],u=c[0][l],w=!v&&b[1][l],x=!v&&c[1][l],y,c=function(){!v&&N(s-w)>20&&(p=h||N(u-x)/N(s-w));o=(n-u)/p+s;q=i["plot"+(a?"Width":"Height")]/p};c();b=o;b<r.min?(b=r.min,y=!0):
b+q>r.max&&(b=r.max-q,y=!0);y?(u-=0.8*(u-g[j][0]),v||(x-=0.8*(x-g[j][1])),c()):g[j]=[u,x];t||(f[j]=o-n,f[m]=q);f=t?1/p:p;e[m]=q;e[j]=b;d[t?a?"scaleY":"scaleX":"scale"+k]=p;d["translate"+k]=f*n+(u-f*s)},pinch:function(a){var b=this,c=b.chart,d=b.pinchDown,e=c.tooltip&&c.tooltip.options.followTouchMove,f=a.touches,g=f.length,h=b.lastValidTouch,i=b.zoomHor||b.pinchHor,j=b.zoomVert||b.pinchVert,k=i||j,l=b.selectionMarker,m={},n=g===1&&(b.inClass(a.target,"highcharts-tracker")&&c.runTrackerClick||c.runChartClick),
q={};(k||e)&&!n&&a.preventDefault();Ua(f,function(a){return b.normalize(a)});if(a.type==="touchstart")p(f,function(a,b){d[b]={chartX:a.chartX,chartY:a.chartY}}),h.x=[d[0].chartX,d[1]&&d[1].chartX],h.y=[d[0].chartY,d[1]&&d[1].chartY],p(c.axes,function(a){if(a.zoomEnabled){var b=c.bounds[a.horiz?"h":"v"],d=a.minPixelPadding,e=a.toPixels(a.dataMin),f=a.toPixels(a.dataMax),g=E(e,f),e=t(e,f);b.min=E(a.pos,g-d);b.max=t(a.pos+a.len,e+d)}});else if(d.length){if(!l)b.selectionMarker=l=s({destroy:Ea},c.plotBox);
b.pinchTranslate(i,j,d,f,m,l,q,h);b.hasPinched=k;b.scaleGroups(m,q);!k&&e&&g===1&&this.runPointActions(b.normalize(a))}},onContainerTouchStart:function(a){var b=this.chart;fa=b.index;a.touches.length===1?(a=this.normalize(a),b.isInsidePlot(a.chartX-b.plotLeft,a.chartY-b.plotTop)?(this.runPointActions(a),this.pinch(a)):this.reset()):a.touches.length===2&&this.pinch(a)},onContainerTouchMove:function(a){(a.touches.length===1||a.touches.length===2)&&this.pinch(a)},onDocumentTouchEnd:function(a){r(fa)&&
Y[fa].pointer.drop(a)}});if(G.PointerEvent||G.MSPointerEvent){var ra={},zb=!!G.PointerEvent,Wb=function(){var a,b=[];b.item=function(a){return this[a]};for(a in ra)ra.hasOwnProperty(a)&&b.push({pageX:ra[a].pageX,pageY:ra[a].pageY,target:ra[a].target});return b},Ab=function(a,b,c,d){a=a.originalEvent||a;if((a.pointerType==="touch"||a.pointerType===a.MSPOINTER_TYPE_TOUCH)&&Y[fa])d(a),d=Y[fa].pointer,d[b]({type:c,target:a.currentTarget,preventDefault:Ea,touches:Wb()})};s(Wa.prototype,{onContainerPointerDown:function(a){Ab(a,
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f=a.legendSymbol,g=this.itemHiddenStyle.color,c=b?c.itemStyle.color:g,h=b?a.legendColor||a.color||"#CCC":g,g=a.options&&a.options.marker,i={stroke:h,fill:h},j;d&&d.css({fill:c,color:c});e&&e.attr({stroke:h});if(f){if(g&&f.isMarker)for(j in g=a.convertAttribs(g),g)d=g[j],d!==u&&(i[j]=d);f.attr(i)}},positionItem:function(a){var b=this.options,c=b.symbolPadding,b=!b.rtl,d=a._legendItemPos,e=d[0],d=d[1],f=a.checkbox;a.legendGroup&&a.legendGroup.translate(b?e:this.legendWidth-e-2*c-4,d);if(f)f.x=e,f.y=
d},destroyItem:function(a){var b=a.checkbox;p(["legendItem","legendLine","legendSymbol","legendGroup"],function(b){a[b]&&(a[b]=a[b].destroy())});b&&Pa(a.checkbox)},destroy:function(){var a=this.group,b=this.box;if(b)this.box=b.destroy();if(a)this.group=a.destroy()},positionCheckboxes:function(a){var b=this.group.alignAttr,c,d=this.clipHeight||this.legendHeight;if(b)c=b.translateY,p(this.allItems,function(e){var f=e.checkbox,g;f&&(g=c+f.y+(a||0)+3,D(f,{left:b.translateX+e.legendItemWidth+f.x-20+"px",
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g=d.symbolPadding,h=this.itemStyle,i=this.itemHiddenStyle,j=this.padding,k=e?o(d.itemDistance,8):0,l=!d.rtl,m=d.width,n=d.itemMarginBottom||0,q=this.itemMarginTop,p=this.initialItemX,r=a.legendItem,s=a.series&&a.series.drawLegendSymbol?a.series:a,u=s.options,u=this.createCheckboxForItem&&u&&u.showCheckbox,x=d.useHTML;if(!r)a.legendGroup=c.g("legend-item").attr({zIndex:1}).add(this.scrollGroup),s.drawLegendSymbol(this,a),a.legendItem=r=c.text(d.labelFormat?Ia(d.labelFormat,a):d.labelFormatter.call(a),
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f);this.lastItemY=q+this.itemY+n;this.lastLineHeight=t(g,this.lastLineHeight);a._legendItemPos=[this.itemX,this.itemY];e?this.itemX+=f:(this.itemY+=q+g+n,this.lastLineHeight=g);this.offsetWidth=m||t((e?this.itemX-p-k:f)+j,this.offsetWidth)},getAllItems:function(){var a=[];p(this.chart.series,function(b){var c=b.options;if(o(c.showInLegend,!r(c.linkedTo)?u:!1,!0))a=a.concat(b.legendItems||(c.legendType==="point"?b.data:b))});return a},render:function(){var a=this,b=a.chart,c=b.renderer,d=a.group,e,
f,g,h,i=a.box,j=a.options,k=a.padding,l=j.borderWidth,m=j.backgroundColor;a.itemX=a.initialItemX;a.itemY=a.initialItemY;a.offsetWidth=0;a.lastItemY=0;if(!d)a.group=d=c.g("legend").attr({zIndex:7}).add(),a.contentGroup=c.g().attr({zIndex:1}).add(d),a.scrollGroup=c.g().add(a.contentGroup);a.renderTitle();e=a.getAllItems();ob(e,function(a,b){return(a.options&&a.options.legendIndex||0)-(b.options&&b.options.legendIndex||0)});j.reversed&&e.reverse();a.allItems=e;a.display=f=!!e.length;p(e,function(b){a.renderItem(b)});
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handleOverflow:function(a){var b=this,c=this.chart,d=c.renderer,e=this.options,f=e.y,f=c.spacingBox.height+(e.verticalAlign==="top"?-f:f)-this.padding,g=e.maxHeight,h,i=this.clipRect,j=e.navigation,k=o(j.animation,!0),l=j.arrowSize||12,m=this.nav,n=this.pages,q,t=this.allItems;e.layout==="horizontal"&&(f/=2);g&&(f=E(f,g));n.length=0;if(a>f&&!e.useHTML){this.clipHeight=h=f-20-this.titleHeight-this.padding;this.currentPage=o(this.currentPage,1);this.fullHeight=a;p(t,function(a,b){var c=a._legendItemPos[1],
d=v(a.legendItem.getBBox().height),e=n.length;if(!e||c-n[e-1]>h&&(q||c)!==n[e-1])n.push(q||c),e++;b===t.length-1&&c+d-n[e-1]>h&&n.push(c);c!==q&&(q=c)});if(!i)i=b.clipRect=d.clipRect(0,this.padding,9999,0),b.contentGroup.clip(i);i.attr({height:h});if(!m)this.nav=m=d.g().attr({zIndex:1}).add(this.group),this.up=d.symbol("triangle",0,0,l,l).on("click",function(){b.scroll(-1,k)}).add(m),this.pager=d.text("",15,10).css(j.style).add(m),this.down=d.symbol("triangle-down",0,0,l,l).on("click",function(){b.scroll(1,
k)}).add(m);b.scroll(0);a=f}else if(m)i.attr({height:c.chartHeight}),m.hide(),this.scrollGroup.attr({translateY:1}),this.clipHeight=0;return a},scroll:function(a,b){var c=this.pages,d=c.length,e=this.currentPage+a,f=this.clipHeight,g=this.options.navigation,h=g.activeColor,g=g.inactiveColor,i=this.pager,j=this.padding;e>d&&(e=d);if(e>0)b!==u&&Qa(b,this.chart),this.nav.attr({translateX:j,translateY:f+this.padding+7+this.titleHeight,visibility:"visible"}),this.up.attr({fill:e===1?g:h}).css({cursor:e===
1?"default":"pointer"}),i.attr({text:e+"/"+d}),this.down.attr({x:18+this.pager.getBBox().width,fill:e===d?g:h}).css({cursor:e===d?"default":"pointer"}),c=-c[e-1]+this.initialItemY,this.scrollGroup.animate({translateY:c}),this.currentPage=e,this.positionCheckboxes(c)}};F=Q.LegendSymbolMixin={drawRectangle:function(a,b){var c=a.options.symbolHeight||12;b.legendSymbol=this.chart.renderer.rect(0,a.baseline-5-c/2,a.symbolWidth,c,o(a.options.symbolRadius,2)).attr({zIndex:3}).add(b.legendGroup)},drawLineMarker:function(a){var b=
this.options,c=b.marker,d;d=a.symbolWidth;var e=this.chart.renderer,f=this.legendGroup,a=a.baseline-v(e.fontMetrics(a.options.itemStyle.fontSize).b*0.3),g;if(b.lineWidth){g={"stroke-width":b.lineWidth};if(b.dashStyle)g.dashstyle=b.dashStyle;this.legendLine=e.path(["M",0,a,"L",d,a]).attr(g).add(f)}if(c&&c.enabled)b=c.radius,this.legendSymbol=d=e.symbol(this.symbol,d/2-b,a-b,2*b,2*b).add(f),d.isMarker=!0}};(/Trident\/7\.0/.test(ua)||Ta)&&Ma(lb.prototype,"positionItem",function(a,b){var c=this,d=function(){b._legendItemPos&&
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null},redraw:function(a){var b=this.axes,c=this.series,d=this.pointer,e=this.legend,f=this.isDirtyLegend,g,h,i=this.isDirtyBox,j=c.length,k=j,l=this.renderer,m=l.isHidden(),n=[];Qa(a,this);m&&this.cloneRenderTo();for(this.layOutTitles();k--;)if(a=c[k],a.options.stacking&&(g=!0,a.isDirty)){h=!0;break}if(h)for(k=j;k--;)if(a=c[k],a.options.stacking)a.isDirty=!0;p(c,function(a){a.isDirty&&a.options.legendType==="point"&&(f=!0)});if(f&&e.options.enabled)e.render(),this.isDirtyLegend=!1;g&&this.getStacks();
if(this.hasCartesianSeries){if(!this.isResizing)this.maxTicks=null,p(b,function(a){a.setScale()});this.adjustTickAmounts();this.getMargins();p(b,function(a){a.isDirty&&(i=!0)});p(b,function(a){if(a.isDirtyExtremes)a.isDirtyExtremes=!1,n.push(function(){I(a,"afterSetExtremes",s(a.eventArgs,a.getExtremes()));delete a.eventArgs});(i||g)&&a.redraw()})}i&&this.drawChartBox();p(c,function(a){a.isDirty&&a.visible&&(!a.isCartesian||a.xAxis)&&a.redraw()});d&&d.reset(!0);l.draw();I(this,"redraw");m&&this.cloneRenderTo(!0);
p(n,function(a){a.call()})},get:function(a){var b=this.axes,c=this.series,d,e;for(d=0;d<b.length;d++)if(b[d].options.id===a)return b[d];for(d=0;d<c.length;d++)if(c[d].options.id===a)return c[d];for(d=0;d<c.length;d++){e=c[d].points||[];for(b=0;b<e.length;b++)if(e[b].id===a)return e[b]}return null},getAxes:function(){var a=this,b=this.options,c=b.xAxis=na(b.xAxis||{}),b=b.yAxis=na(b.yAxis||{});p(c,function(a,b){a.index=b;a.isX=!0});p(b,function(a,b){a.index=b});c=c.concat(b);p(c,function(b){new ka(a,
b)});a.adjustTickAmounts()},getSelectedPoints:function(){var a=[];p(this.series,function(b){a=a.concat(vb(b.points||[],function(a){return a.selected}))});return a},getSelectedSeries:function(){return vb(this.series,function(a){return a.selected})},getStacks:function(){var a=this;p(a.yAxis,function(a){if(a.stacks&&a.hasVisibleSeries)a.oldStacks=a.stacks});p(a.series,function(b){if(b.options.stacking&&(b.visible===!0||a.options.chart.ignoreHiddenSeries===!1))b.stackKey=b.type+o(b.options.stack,"")})},
setTitle:function(a,b,c){var g;var d=this,e=d.options,f;f=e.title=w(e.title,a);g=e.subtitle=w(e.subtitle,b),e=g;p([["title",a,f],["subtitle",b,e]],function(a){var b=a[0],c=d[b],e=a[1],a=a[2];c&&e&&(d[b]=c=c.destroy());a&&a.text&&!c&&(d[b]=d.renderer.text(a.text,0,0,a.useHTML).attr({align:a.align,"class":"highcharts-"+b,zIndex:a.zIndex||4}).css(a.style).add())});d.layOutTitles(c)},layOutTitles:function(a){var b=0,c=this.title,d=this.subtitle,e=this.options,f=e.title,e=e.subtitle,g=this.spacingBox.width-
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c=this.renderToClone||this.renderTo;if(!r(b))this.containerWidth=ib(c,"width");if(!r(a))this.containerHeight=ib(c,"height");this.chartWidth=t(0,b||this.containerWidth||600);this.chartHeight=t(0,o(a,this.containerHeight>19?this.containerHeight:400))},cloneRenderTo:function(a){var b=this.renderToClone,c=this.container;a?b&&(this.renderTo.appendChild(c),Pa(b),delete this.renderToClone):(c&&c.parentNode===this.renderTo&&this.renderTo.removeChild(c),this.renderToClone=b=this.renderTo.cloneNode(0),D(b,
{position:"absolute",top:"-9999px",display:"block"}),b.style.setProperty&&b.style.setProperty("display","block","important"),y.body.appendChild(b),c&&b.appendChild(c))},getContainer:function(){var a,b=this.options.chart,c,d,e;this.renderTo=a=b.renderTo;e="highcharts-"+tb++;if(ga(a))this.renderTo=a=y.getElementById(a);a||oa(13,!0);c=x(z(a,"data-highcharts-chart"));!isNaN(c)&&Y[c]&&Y[c].hasRendered&&Y[c].destroy();z(a,"data-highcharts-chart",this.index);a.innerHTML="";!b.skipClone&&!a.offsetWidth&&
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[];p(a.segments,function(e){c=a.getSegmentPath(e);e.length>1?b=b.concat(c):d.push(e[0])});a.singlePoints=d;return a.graphPath=b},drawGraph:function(){var a=this,b=this.options,c=[["graph",b.lineColor||this.color]],d=b.lineWidth,e=b.dashStyle,f=b.linecap!=="square",g=this.getGraphPath(),h=b.negativeColor;h&&c.push(["graphNeg",h]);p(c,function(c,h){var k=c[0],l=a[k];if(l)ab(l),l.animate({d:g});else if(d&&g.length)l={stroke:c[1],"stroke-width":d,fill:O,zIndex:1},e?l.dashstyle=e:f&&(l["stroke-linecap"]=
l["stroke-linejoin"]="round"),a[k]=a.chart.renderer.path(g).attr(l).add(a.group).shadow(!h&&b.shadow)})},clipNeg:function(){var a=this.options,b=this.chart,c=b.renderer,d=a.negativeColor||a.negativeFillColor,e,f=this.graph,g=this.area,h=this.posClip,i=this.negClip;e=b.chartWidth;var j=b.chartHeight,k=t(e,j),l=this.yAxis;if(d&&(f||g)){d=v(l.toPixels(a.threshold||0,!0));d<0&&(k-=d);a={x:0,y:0,width:k,height:d};k={x:0,y:d,width:k,height:k};if(b.inverted)a.height=k.y=b.plotWidth-d,c.isVML&&(a={x:b.plotWidth-
d-b.plotLeft,y:0,width:e,height:j},k={x:d+b.plotLeft-e,y:0,width:b.plotLeft+d,height:e});l.reversed?(b=k,e=a):(b=a,e=k);h?(h.animate(b),i.animate(e)):(this.posClip=h=c.clipRect(b),this.negClip=i=c.clipRect(e),f&&this.graphNeg&&(f.clip(h),this.graphNeg.clip(i)),g&&(g.clip(h),this.areaNeg.clip(i)))}},invertGroups:function(){function a(){var a={width:b.yAxis.len,height:b.xAxis.len};p(["group","markerGroup"],function(c){b[c]&&b[c].attr(a).invert()})}var b=this,c=b.chart;if(b.xAxis)C(c,"resize",a),C(b,
"destroy",function(){U(c,"resize",a)}),a(),b.invertGroups=a},plotGroup:function(a,b,c,d,e){var f=this[a],g=!f;g&&(this[a]=f=this.chart.renderer.g(b).attr({visibility:c,zIndex:d||0.1}).add(e));f[g?"attr":"animate"](this.getPlotBox());return f},getPlotBox:function(){return{translateX:this.xAxis?this.xAxis.left:this.chart.plotLeft,translateY:this.yAxis?this.yAxis.top:this.chart.plotTop,scaleX:1,scaleY:1}},render:function(){var a=this.chart,b,c=this.options,d=c.animation&&!!this.animate&&a.renderer.isSVG,
e=this.visible?"visible":"hidden",f=c.zIndex,g=this.hasRendered,h=a.seriesGroup;b=this.plotGroup("group","series",e,f,h);this.markerGroup=this.plotGroup("markerGroup","markers",e,f,h);d&&this.animate(!0);this.getAttribs();b.inverted=this.isCartesian?a.inverted:!1;this.drawGraph&&(this.drawGraph(),this.clipNeg());this.drawDataLabels&&this.drawDataLabels();this.visible&&this.drawPoints();this.drawTracker&&this.options.enableMouseTracking!==!1&&this.drawTracker();a.inverted&&this.invertGroups();c.clip!==
!1&&!this.sharedClipKey&&!g&&b.clip(a.clipRect);d?this.animate():g||this.afterAnimate();this.isDirty=this.isDirtyData=!1;this.hasRendered=!0},redraw:function(){var a=this.chart,b=this.isDirtyData,c=this.group,d=this.xAxis,e=this.yAxis;c&&(a.inverted&&c.attr({width:a.plotWidth,height:a.plotHeight}),c.animate({translateX:o(d&&d.left,a.plotLeft),translateY:o(e&&e.top,a.plotTop)}));this.translate();this.setTooltipPoints(!0);this.render();b&&I(this,"updatedData")}};Hb.prototype={destroy:function(){Oa(this,
this.axis)},render:function(a){var b=this.options,c=b.format,c=c?Ia(c,this):b.formatter.call(this);this.label?this.label.attr({text:c,visibility:"hidden"}):this.label=this.axis.chart.renderer.text(c,0,0,b.useHTML).css(b.style).attr({align:this.textAlign,rotation:b.rotation,visibility:"hidden"}).add(a)},setOffset:function(a,b){var c=this.axis,d=c.chart,e=d.inverted,f=this.isNegative,g=c.translate(this.percent?100:this.total,0,0,0,1),c=c.translate(0),c=N(g-c),h=d.xAxis[0].translate(this.x)+a,i=d.plotHeight,
f={x:e?f?g:g-c:h,y:e?i-h-b:f?i-g-c:i-g,width:e?c:b,height:e?b:c};if(e=this.label)e.align(this.alignOptions,null,f),f=e.alignAttr,e[this.options.crop===!1||d.isInsidePlot(f.x,f.y)?"show":"hide"](!0)}};ka.prototype.buildStacks=function(){var a=this.series,b=o(this.options.reversedStacks,!0),c=a.length;if(!this.isXAxis){for(this.usePercentage=!1;c--;)a[b?c:a.length-c-1].setStackedPoints();if(this.usePercentage)for(c=0;c<a.length;c++)a[c].setPercentStacks()}};ka.prototype.renderStackTotals=function(){var a=
this.chart,b=a.renderer,c=this.stacks,d,e,f=this.stackTotalGroup;if(!f)this.stackTotalGroup=f=b.g("stack-labels").attr({visibility:"visible",zIndex:6}).add();f.translate(a.plotLeft,a.plotTop);for(d in c)for(e in a=c[d],a)a[e].render(f)};M.prototype.setStackedPoints=function(){if(this.options.stacking&&!(this.visible!==!0&&this.chart.options.chart.ignoreHiddenSeries!==!1)){var a=this.processedXData,b=this.processedYData,c=[],d=b.length,e=this.options,f=e.threshold,g=e.stack,e=e.stacking,h=this.stackKey,
i="-"+h,j=this.negStacks,k=this.yAxis,l=k.stacks,m=k.oldStacks,n,q,o,p,r;for(o=0;o<d;o++){p=a[o];r=b[o];q=(n=j&&r<f)?i:h;l[q]||(l[q]={});if(!l[q][p])m[q]&&m[q][p]?(l[q][p]=m[q][p],l[q][p].total=null):l[q][p]=new Hb(k,k.options.stackLabels,n,p,g,e);q=l[q][p];q.points[this.index]=[q.cum||0];e==="percent"?(n=n?h:i,j&&l[n]&&l[n][p]?(n=l[n][p],q.total=n.total=t(n.total,q.total)+N(r)||0):q.total=aa(q.total+(N(r)||0))):q.total=aa(q.total+(r||0));q.cum=(q.cum||0)+(r||0);q.points[this.index].push(q.cum);c[o]=
q.cum}if(e==="percent")k.usePercentage=!0;this.stackedYData=c;k.oldStacks={}}};M.prototype.setPercentStacks=function(){var a=this,b=a.stackKey,c=a.yAxis.stacks,d=a.processedXData;p([b,"-"+b],function(b){var e;for(var f=d.length,g,h;f--;)if(g=d[f],e=(h=c[b]&&c[b][g])&&h.points[a.index],g=e)h=h.total?100/h.total:0,g[0]=aa(g[0]*h),g[1]=aa(g[1]*h),a.stackedYData[f]=g[1]})};s(Ya.prototype,{addSeries:function(a,b,c){var d,e=this;a&&(b=o(b,!0),I(e,"addSeries",{options:a},function(){d=e.initSeries(a);e.isDirtyLegend=
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!0);d.firePointEvent("update",{options:a},function(){d.applyOptions(a);if($(a)){e.getAttribs();if(f)a&&a.marker&&a.marker.symbol?d.graphic=f.destroy():f.attr(d.pointAttr[d.state||""]);if(a&&a.dataLabels&&d.dataLabel)d.dataLabel=d.dataLabel.destroy()}g=va(d,h);e.updateParallelArrays(d,g);j.data[g]=d.options;e.isDirty=e.isDirtyData=!0;if(!e.fixedBox&&e.hasCartesianSeries)i.isDirtyBox=!0;j.legendType==="point"&&i.legend.destroyItem(d);b&&i.redraw(c)})},remove:function(a,b){var c=this,d=c.series,e=d.points,
f=d.chart,g,h=d.data;Qa(b,f);a=o(a,!0);c.firePointEvent("remove",null,function(){g=va(c,h);h.length===e.length&&e.splice(g,1);h.splice(g,1);d.options.data.splice(g,1);d.updateParallelArrays(c,"splice",g,1);c.destroy();d.isDirty=!0;d.isDirtyData=!0;a&&f.redraw()})}});s(M.prototype,{addPoint:function(a,b,c,d){var e=this.options,f=this.data,g=this.graph,h=this.area,i=this.chart,j=this.xAxis&&this.xAxis.names,k=g&&g.shift||0,l=e.data,m,n=this.xData;Qa(d,i);c&&p([g,h,this.graphNeg,this.areaNeg],function(a){if(a)a.shift=
k+1});if(h)h.isArea=!0;b=o(b,!0);d={series:this};this.pointClass.prototype.applyOptions.apply(d,[a]);g=d.x;h=n.length;if(this.requireSorting&&g<n[h-1])for(m=!0;h&&n[h-1]>g;)h--;this.updateParallelArrays(d,"splice",h,0,0);this.updateParallelArrays(d,h);if(j)j[g]=d.name;l.splice(h,0,a);m&&(this.data.splice(h,0,null),this.processData());e.legendType==="point"&&this.generatePoints();c&&(f[0]&&f[0].remove?f[0].remove(!1):(f.shift(),this.updateParallelArrays(d,"shift"),l.shift()));this.isDirtyData=this.isDirty=
!0;b&&(this.getAttribs(),i.redraw())},remove:function(a,b){var c=this,d=c.chart,a=o(a,!0);if(!c.isRemoving)c.isRemoving=!0,I(c,"remove",null,function(){c.destroy();d.isDirtyLegend=d.isDirtyBox=!0;d.linkSeries();a&&d.redraw(b)});c.isRemoving=!1},update:function(a,b){var c=this.chart,d=this.type,e=J[d].prototype,f,a=w(this.userOptions,{animation:!1,index:this.index,pointStart:this.xData[0]},{data:this.options.data},a);this.remove(!1);for(f in e)e.hasOwnProperty(f)&&(this[f]=u);s(this,J[a.type||d].prototype);
this.init(c,a);o(b,!0)&&c.redraw(!1)}});s(ka.prototype,{update:function(a,b){var c=this.chart,a=c.options[this.coll][this.options.index]=w(this.userOptions,a);this.destroy(!0);this._addedPlotLB=this.userMin=this.userMax=u;this.init(c,s(a,{events:u}));c.isDirtyBox=!0;o(b,!0)&&c.redraw()},remove:function(a){for(var b=this.chart,c=this.coll,d=this.series,e=d.length;e--;)d[e]&&d[e].remove(!1);ia(b.axes,this);ia(b[c],this);b.options[c].splice(this.options.index,1);p(b[c],function(a,b){a.options.index=
b});this.destroy();b.isDirtyBox=!0;o(a,!0)&&b.redraw()},setTitle:function(a,b){this.update({title:a},b)},setCategories:function(a,b){this.update({categories:a},b)}});ea=ja(M);J.line=ea;Z.area=w(R,{threshold:0});var ma=ja(M,{type:"area",getSegments:function(){var a=[],b=[],c=[],d=this.xAxis,e=this.yAxis,f=e.stacks[this.stackKey],g={},h,i,j=this.points,k=this.options.connectNulls,l,m,n;if(this.options.stacking&&!this.cropped){for(m=0;m<j.length;m++)g[j[m].x]=j[m];for(n in f)f[n].total!==null&&c.push(+n);
c.sort(function(a,b){return a-b});p(c,function(a){if(!k||g[a]&&g[a].y!==null)g[a]?b.push(g[a]):(h=d.translate(a),l=f[a].percent?f[a].total?f[a].cum*100/f[a].total:0:f[a].cum,i=e.toPixels(l,!0),b.push({y:null,plotX:h,clientX:h,plotY:i,yBottom:i,onMouseOver:Ea}))});b.length&&a.push(b)}else M.prototype.getSegments.call(this),a=this.segments;this.segments=a},getSegmentPath:function(a){var b=M.prototype.getSegmentPath.call(this,a),c=[].concat(b),d,e=this.options;d=b.length;var f=this.yAxis.getThreshold(e.threshold),
g;d===3&&c.push("L",b[1],b[2]);if(e.stacking&&!this.closedStacks)for(d=a.length-1;d>=0;d--)g=o(a[d].yBottom,f),d<a.length-1&&e.step&&c.push(a[d+1].plotX,g),c.push(a[d].plotX,g);else this.closeSegment(c,a,f);this.areaPath=this.areaPath.concat(c);return b},closeSegment:function(a,b,c){a.push("L",b[b.length-1].plotX,c,"L",b[0].plotX,c)},drawGraph:function(){this.areaPath=[];M.prototype.drawGraph.apply(this);var a=this,b=this.areaPath,c=this.options,d=c.negativeColor,e=c.negativeFillColor,f=[["area",
this.color,c.fillColor]];(d||e)&&f.push(["areaNeg",d,e]);p(f,function(d){var e=d[0],f=a[e];f?f.animate({d:b}):a[e]=a.chart.renderer.path(b).attr({fill:o(d[2],wa(d[1]).setOpacity(o(c.fillOpacity,0.75)).get()),zIndex:0}).add(a.group)})},drawLegendSymbol:F.drawRectangle});J.area=ma;Z.spline=w(R);ea=ja(M,{type:"spline",getPointSpline:function(a,b,c){var d=b.plotX,e=b.plotY,f=a[c-1],g=a[c+1],h,i,j,k;if(f&&g){a=f.plotY;j=g.plotX;var g=g.plotY,l;h=(1.5*d+f.plotX)/2.5;i=(1.5*e+a)/2.5;j=(1.5*d+j)/2.5;k=(1.5*
e+g)/2.5;l=(k-i)*(j-d)/(j-h)+e-k;i+=l;k+=l;i>a&&i>e?(i=t(a,e),k=2*e-i):i<a&&i<e&&(i=E(a,e),k=2*e-i);k>g&&k>e?(k=t(g,e),i=2*e-k):k<g&&k<e&&(k=E(g,e),i=2*e-k);b.rightContX=j;b.rightContY=k}c?(b=["C",f.rightContX||f.plotX,f.rightContY||f.plotY,h||d,i||e,d,e],f.rightContX=f.rightContY=null):b=["M",d,e];return b}});J.spline=ea;Z.areaspline=w(Z.area);ma=ma.prototype;ea=ja(ea,{type:"areaspline",closedStacks:!0,getSegmentPath:ma.getSegmentPath,closeSegment:ma.closeSegment,drawGraph:ma.drawGraph,drawLegendSymbol:F.drawRectangle});
J.areaspline=ea;Z.column=w(R,{borderColor:"#FFFFFF",borderWidth:1,borderRadius:0,groupPadding:0.2,marker:null,pointPadding:0.1,minPointLength:0,cropThreshold:50,pointRange:null,states:{hover:{brightness:0.1,shadow:!1},select:{color:"#C0C0C0",borderColor:"#000000",shadow:!1}},dataLabels:{align:null,verticalAlign:null,y:null},stickyTracking:!1,threshold:0});ea=ja(M,{type:"column",pointAttrToOptions:{stroke:"borderColor","stroke-width":"borderWidth",fill:"color",r:"borderRadius"},cropShoulder:0,trackerGroups:["group",
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height:c}})},getSymbol:Ea,drawLegendSymbol:F.drawRectangle,drawGraph:Ea,drawPoints:function(){var a=this,b=a.options,c=this.chart.renderer,d=b.animationLimit||250,e;p(a.points,function(f){var g=f.plotY,h=f.graphic;if(g!==u&&!isNaN(g)&&f.y!==null)e=f.shapeArgs,h?(ab(h),h[a.points.length<d?"animate":"attr"](w(e))):f.graphic=c[f.shapeType](e).attr(f.pointAttr[f.selected?"select":""]).add(a.group).shadow(b.shadow,null,b.stacking&&!b.borderRadius);else if(h)f.graphic=h.destroy()})},animate:function(a){var b=
this.yAxis,c=this.options,d=this.chart.inverted,e={};if(X)a?(e.scaleY=0.001,a=E(b.pos+b.len,t(b.pos,b.toPixels(c.threshold))),d?e.translateX=a-b.len:e.translateY=a,this.group.attr(e)):(e.scaleY=1,e[d?"translateX":"translateY"]=b.pos,this.group.animate(e,this.options.animation),this.animate=null)},remove:function(){var a=this,b=a.chart;b.hasRendered&&p(b.series,function(b){if(b.type===a.type)b.isDirty=!0});M.prototype.remove.apply(a,arguments)}});J.column=ea;Z.bar=w(Z.column);ma=ja(ea,{type:"bar",
inverted:!0});J.bar=ma;Z.scatter=w(R,{lineWidth:0,tooltip:{headerFormat:'<span style="font-size: 10px; color:{series.color}">{series.name}</span><br/>',pointFormat:"x: <b>{point.x}</b><br/>y: <b>{point.y}</b><br/>",followPointer:!0},stickyTracking:!1});ma=ja(M,{type:"scatter",sorted:!1,requireSorting:!1,noSharedTooltip:!0,trackerGroups:["markerGroup"],takeOrdinalPosition:!1,singularTooltips:!0,drawGraph:function(){this.options.lineWidth&&M.prototype.drawGraph.call(this)}});J.scatter=ma;Z.pie=w(R,
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b.startAngleRad;if(!a)p(c,function(a){var c=a.graphic,a=a.shapeArgs;c&&(c.attr({r:b.center[3]/2,start:d,end:d}),c.animate({r:a.r,start:a.start,end:a.end},b.options.animation))}),b.animate=null},setData:function(a,b,c,d){M.prototype.setData.call(this,a,!1,c,d);this.processData();this.generatePoints();o(b,!0)&&this.chart.redraw(c)},generatePoints:function(){var a,b=0,c,d,e,f=this.options.ignoreHiddenPoint;M.prototype.generatePoints.call(this);c=this.points;d=c.length;for(a=0;a<d;a++)e=c[a],b+=f&&!e.visible?
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"center":p.half?"right":"left",h]}},drawGraph:null,drawPoints:function(){var a=this,b=a.chart.renderer,c,d,e=a.options.shadow,f,g;if(e&&!a.shadowGroup)a.shadowGroup=b.g("shadow").add(a.group);p(a.points,function(h){d=h.graphic;g=h.shapeArgs;f=h.shadowGroup;if(e&&!f)f=h.shadowGroup=b.g("shadow").add(a.shadowGroup);c=h.sliced?h.slicedTranslation:{translateX:0,translateY:0};f&&f.attr(c);d?d.animate(s(g,c)):h.graphic=d=b[h.shapeType](g).setRadialReference(a.center).attr(h.pointAttr[h.selected?"select":
""]).attr({"stroke-linejoin":"round"}).attr(c).add(a.group).shadow(e,f);h.visible!==void 0&&h.setVisible(h.visible)})},sortByAngle:function(a,b){a.sort(function(a,d){return a.angle!==void 0&&(d.angle-a.angle)*b})},drawLegendSymbol:F.drawRectangle,getCenter:da.getCenter,getSymbol:Ea};R=ja(M,R);J.pie=R;M.prototype.drawDataLabels=function(){var a=this,b=a.options,c=b.cursor,d=b.dataLabels,b=a.points,e,f,g,h;if(d.enabled||a._hasPointLabels)a.dlProcessOptions&&a.dlProcessOptions(d),h=a.plotGroup("dataLabelsGroup",
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stroke:d.borderColor,"stroke-width":d.borderWidth,r:d.borderRadius||0,rotation:j,padding:d.padding,zIndex:1};for(m in k)k[m]===u&&delete k[m];k=b.dataLabel=a.chart.renderer[j?"text":"label"](g,0,-999,null,null,null,d.useHTML).attr(k).css(s(d.style,c&&{cursor:c})).add(h).shadow(d.shadow)}k&&a.alignDataLabel(b,k,d,null,p)}})};M.prototype.alignDataLabel=function(a,b,c,d,e){var f=this.chart,g=f.inverted,h=o(a.plotX,-999),i=o(a.plotY,-999),j=b.getBBox();if(a=this.visible&&(a.series.forceDL||f.isInsidePlot(h,
v(i),g)||d&&f.isInsidePlot(h,g?d.x+1:d.y+d.height-1,g)))d=s({x:g?f.plotWidth-i:h,y:v(g?f.plotHeight-h:i),width:0,height:0},d),s(c,{width:j.width,height:j.height}),c.rotation?(g={align:c.align,x:d.x+c.x+d.width/2,y:d.y+c.y+d.height/2},b[e?"attr":"animate"](g)):(b.align(c,null,d),g=b.alignAttr,o(c.overflow,"justify")==="justify"?this.justifyDataLabel(b,c,g,j,d,e):o(c.crop,!0)&&(a=f.isInsidePlot(g.x,g.y)&&f.isInsidePlot(g.x+j.width,g.y+j.height)));if(!a)b.attr({y:-999}),b.placed=!1};M.prototype.justifyDataLabel=
function(a,b,c,d,e,f){var g=this.chart,h=b.align,i=b.verticalAlign,j,k;j=c.x;if(j<0)h==="right"?b.align="left":b.x=-j,k=!0;j=c.x+d.width;if(j>g.plotWidth)h==="left"?b.align="right":b.x=g.plotWidth-j,k=!0;j=c.y;if(j<0)i==="bottom"?b.verticalAlign="top":b.y=-j,k=!0;j=c.y+d.height;if(j>g.plotHeight)i==="top"?b.verticalAlign="bottom":b.y=g.plotHeight-j,k=!0;if(k)a.placed=!f,a.align(b,null,e)};if(J.pie)J.pie.prototype.drawDataLabels=function(){var a=this,b=a.data,c,d=a.chart,e=a.options.dataLabels,f=o(e.connectorPadding,
10),g=o(e.connectorWidth,1),h=d.plotWidth,d=d.plotHeight,i,j,k=o(e.softConnector,!0),l=e.distance,m=a.center,n=m[2]/2,q=m[1],r=l>0,s,u,w,x,y=[[],[]],z,B,E,H,A,D=[0,0,0,0],J=function(a,b){return b.y-a.y};if(a.visible&&(e.enabled||a._hasPointLabels)){M.prototype.drawDataLabels.apply(a);p(b,function(a){a.dataLabel&&a.visible&&y[a.half].push(a)});for(H=0;!x&&b[H];)x=b[H]&&b[H].dataLabel&&(b[H].dataLabel.getBBox().height||21),H++;for(H=2;H--;){var b=[],I=[],F=y[H],G=F.length,C;a.sortByAngle(F,H-0.5);if(l>
0){for(A=q-n-l;A<=q+n+l;A+=x)b.push(A);u=b.length;if(G>u){c=[].concat(F);c.sort(J);for(A=G;A--;)c[A].rank=A;for(A=G;A--;)F[A].rank>=u&&F.splice(A,1);G=F.length}for(A=0;A<G;A++){c=F[A];w=c.labelPos;c=9999;var O,L;for(L=0;L<u;L++)O=N(b[L]-w[1]),O<c&&(c=O,C=L);if(C<A&&b[A]!==null)C=A;else for(u<G-A+C&&b[A]!==null&&(C=u-G+A);b[C]===null;)C++;I.push({i:C,y:b[C]});b[C]=null}I.sort(J)}for(A=0;A<G;A++){c=F[A];w=c.labelPos;s=c.dataLabel;E=c.visible===!1?"hidden":"visible";c=w[1];if(l>0){if(u=I.pop(),C=u.i,
B=u.y,c>B&&b[C+1]!==null||c<B&&b[C-1]!==null)B=c}else B=c;z=e.justify?m[0]+(H?-1:1)*(n+l):a.getX(C===0||C===b.length-1?c:B,H);s._attr={visibility:E,align:w[6]};s._pos={x:z+e.x+({left:f,right:-f}[w[6]]||0),y:B+e.y-10};s.connX=z;s.connY=B;if(this.options.size===null)u=s.width,z-u<f?D[3]=t(v(u-z+f),D[3]):z+u>h-f&&(D[1]=t(v(z+u-h+f),D[1])),B-x/2<0?D[0]=t(v(-B+x/2),D[0]):B+x/2>d&&(D[2]=t(v(B+x/2-d),D[2]))}}if(Ba(D)===0||this.verifyDataLabelOverflow(D))this.placeDataLabels(),r&&g&&p(this.points,function(b){i=
b.connector;w=b.labelPos;if((s=b.dataLabel)&&s._pos)E=s._attr.visibility,z=s.connX,B=s.connY,j=k?["M",z+(w[6]==="left"?5:-5),B,"C",z,B,2*w[2]-w[4],2*w[3]-w[5],w[2],w[3],"L",w[4],w[5]]:["M",z+(w[6]==="left"?5:-5),B,"L",w[2],w[3],"L",w[4],w[5]],i?(i.animate({d:j}),i.attr("visibility",E)):b.connector=i=a.chart.renderer.path(j).attr({"stroke-width":g,stroke:e.connectorColor||b.color||"#606060",visibility:E}).add(a.group);else if(i)b.connector=i.destroy()})}},J.pie.prototype.placeDataLabels=function(){p(this.points,
function(a){var a=a.dataLabel,b;if(a)(b=a._pos)?(a.attr(a._attr),a[a.moved?"animate":"attr"](b),a.moved=!0):a&&a.attr({y:-999})})},J.pie.prototype.alignDataLabel=Ea,J.pie.prototype.verifyDataLabelOverflow=function(a){var b=this.center,c=this.options,d=c.center,e=c=c.minSize||80,f;d[0]!==null?e=t(b[2]-t(a[1],a[3]),c):(e=t(b[2]-a[1]-a[3],c),b[0]+=(a[3]-a[1])/2);d[1]!==null?e=t(E(e,b[2]-t(a[0],a[2])),c):(e=t(E(e,b[2]-a[0]-a[2]),c),b[1]+=(a[0]-a[2])/2);e<b[2]?(b[2]=e,this.translate(b),p(this.points,function(a){if(a.dataLabel)a.dataLabel._pos=
null}),this.drawDataLabels&&this.drawDataLabels()):f=!0;return f};if(J.column)J.column.prototype.alignDataLabel=function(a,b,c,d,e){var f=this.chart,g=f.inverted,h=a.dlBox||a.shapeArgs,i=a.below||a.plotY>o(this.translatedThreshold,f.plotSizeY),j=o(c.inside,!!this.options.stacking);if(h&&(d=w(h),g&&(d={x:f.plotWidth-d.y-d.height,y:f.plotHeight-d.x-d.width,width:d.height,height:d.width}),!j))g?(d.x+=i?0:d.width,d.width=0):(d.y+=i?d.height:0,d.height=0);c.align=o(c.align,!g||j?"center":i?"right":"left");
c.verticalAlign=o(c.verticalAlign,g||j?"middle":i?"top":"bottom");M.prototype.alignDataLabel.call(this,a,b,c,d,e)};R=Q.TrackerMixin={drawTrackerPoint:function(){var a=this,b=a.chart,c=b.pointer,d=a.options.cursor,e=d&&{cursor:d},f=function(c){var d=c.target,e;if(b.hoverSeries!==a)a.onMouseOver();for(;d&&!e;)e=d.point,d=d.parentNode;if(e!==u&&e!==b.hoverPoint)e.onMouseOver(c)};p(a.points,function(a){if(a.graphic)a.graphic.element.point=a;if(a.dataLabel)a.dataLabel.element.point=a});if(!a._hasTracking)p(a.trackerGroups,
function(b){if(a[b]&&(a[b].addClass("highcharts-tracker").on("mouseover",f).on("mouseout",function(a){c.onTrackerMouseOut(a)}).css(e),$a))a[b].on("touchstart",f)}),a._hasTracking=!0},drawTrackerGraph:function(){var a=this,b=a.options,c=b.trackByArea,d=[].concat(c?a.areaPath:a.graphPath),e=d.length,f=a.chart,g=f.pointer,h=f.renderer,i=f.options.tooltip.snap,j=a.tracker,k=b.cursor,l=k&&{cursor:k},k=a.singlePoints,m,n=function(){if(f.hoverSeries!==a)a.onMouseOver()},o="rgba(192,192,192,"+(X?1.0E-4:0.002)+
")";if(e&&!c)for(m=e+1;m--;)d[m]==="M"&&d.splice(m+1,0,d[m+1]-i,d[m+2],"L"),(m&&d[m]==="M"||m===e)&&d.splice(m,0,"L",d[m-2]+i,d[m-1]);for(m=0;m<k.length;m++)e=k[m],d.push("M",e.plotX-i,e.plotY,"L",e.plotX+i,e.plotY);j?j.attr({d:d}):(a.tracker=h.path(d).attr({"stroke-linejoin":"round",visibility:a.visible?"visible":"hidden",stroke:o,fill:c?o:O,"stroke-width":b.lineWidth+(c?0:2*i),zIndex:2}).add(a.group),p([a.tracker,a.markerGroup],function(a){a.addClass("highcharts-tracker").on("mouseover",n).on("mouseout",
function(a){g.onTrackerMouseOut(a)}).css(l);if($a)a.on("touchstart",n)}))}};if(J.column)ea.prototype.drawTracker=R.drawTrackerPoint;if(J.pie)J.pie.prototype.drawTracker=R.drawTrackerPoint;if(J.scatter)ma.prototype.drawTracker=R.drawTrackerPoint;s(lb.prototype,{setItemEvents:function(a,b,c,d,e){var f=this;(c?b:a.legendGroup).on("mouseover",function(){a.setState("hover");b.css(f.options.itemHoverStyle)}).on("mouseout",function(){b.css(a.visible?d:e);a.setState()}).on("click",function(b){var c=function(){a.setVisible()},
b={browserEvent:b};a.firePointEvent?a.firePointEvent("legendItemClick",b,c):I(a,"legendItemClick",b,c)})},createCheckboxForItem:function(a){a.checkbox=V("input",{type:"checkbox",checked:a.selected,defaultChecked:a.selected},this.options.itemCheckboxStyle,this.chart.container);C(a.checkbox,"click",function(b){I(a,"checkboxClick",{checked:b.target.checked},function(){a.select()})})}});L.legend.itemStyle.cursor="pointer";s(Ya.prototype,{showResetZoom:function(){var a=this,b=L.lang,c=a.options.chart.resetZoomButton,
d=c.theme,e=d.states,f=c.relativeTo==="chart"?null:"plotBox";this.resetZoomButton=a.renderer.button(b.resetZoom,null,null,function(){a.zoomOut()},d,e&&e.hover).attr({align:c.position.align,title:b.resetZoomTitle}).add().align(c.position,!1,f)},zoomOut:function(){var a=this;I(a,"selection",{resetSelection:!0},function(){a.zoom()})},zoom:function(a){var b,c=this.pointer,d=!1,e;!a||a.resetSelection?p(this.axes,function(a){b=a.zoom()}):p(a.xAxis.concat(a.yAxis),function(a){var e=a.axis,h=e.isXAxis;if(c[h?
"zoomX":"zoomY"]||c[h?"pinchX":"pinchY"])b=e.zoom(a.min,a.max),e.displayBtn&&(d=!0)});e=this.resetZoomButton;if(d&&!e)this.showResetZoom();else if(!d&&$(e))this.resetZoomButton=e.destroy();b&&this.redraw(o(this.options.chart.animation,a&&a.animation,this.pointCount<100))},pan:function(a,b){var c=this,d=c.hoverPoints,e;d&&p(d,function(a){a.setState()});p(b==="xy"?[1,0]:[1],function(b){var d=a[b?"chartX":"chartY"],h=c[b?"xAxis":"yAxis"][0],i=c[b?"mouseDownX":"mouseDownY"],j=(h.pointRange||0)/2,k=h.getExtremes(),
l=h.toValue(i-d,!0)+j,i=h.toValue(i+c[b?"plotWidth":"plotHeight"]-d,!0)-j;h.series.length&&l>E(k.dataMin,k.min)&&i<t(k.dataMax,k.max)&&(h.setExtremes(l,i,!1,!1,{trigger:"pan"}),e=!0);c[b?"mouseDownX":"mouseDownY"]=d});e&&c.redraw(!1);D(c.container,{cursor:"move"})}});s(Fa.prototype,{select:function(a,b){var c=this,d=c.series,e=d.chart,a=o(a,!c.selected);c.firePointEvent(a?"select":"unselect",{accumulate:b},function(){c.selected=c.options.selected=a;d.options.data[va(c,d.data)]=c.options;c.setState(a&&
"select");b||p(e.getSelectedPoints(),function(a){if(a.selected&&a!==c)a.selected=a.options.selected=!1,d.options.data[va(a,d.data)]=a.options,a.setState(""),a.firePointEvent("unselect")})})},onMouseOver:function(a){var b=this.series,c=b.chart,d=c.tooltip,e=c.hoverPoint;if(e&&e!==this)e.onMouseOut();this.firePointEvent("mouseOver");d&&(!d.shared||b.noSharedTooltip)&&d.refresh(this,a);this.setState("hover");c.hoverPoint=this},onMouseOut:function(){var a=this.series.chart,b=a.hoverPoints;if(!b||va(this,
b)===-1)this.firePointEvent("mouseOut"),this.setState(),a.hoverPoint=null},firePointEvent:function(a,b,c){var d=this,e=this.series.options;(e.point.events[a]||d.options&&d.options.events&&d.options.events[a])&&this.importEvents();a==="click"&&e.allowPointSelect&&(c=function(a){d.select(null,a.ctrlKey||a.metaKey||a.shiftKey)});I(this,a,b,c)},importEvents:function(){if(!this.hasImportedEvents){var a=w(this.series.options.point,this.options).events,b;this.events=a;for(b in a)C(this,b,a[b]);this.hasImportedEvents=
!0}},setState:function(a,b){var c=this.plotX,d=this.plotY,e=this.series,f=e.options.states,g=Z[e.type].marker&&e.options.marker,h=g&&!g.enabled,i=g&&g.states[a],j=i&&i.enabled===!1,k=e.stateMarkerGraphic,l=this.marker||{},m=e.chart,n=this.pointAttr,a=a||"",b=b&&k;if(!(a===this.state&&!b||this.selected&&a!=="select"||f[a]&&f[a].enabled===!1||a&&(j||h&&!i.enabled)||a&&l.states&&l.states[a]&&l.states[a].enabled===!1)){if(this.graphic)f=g&&this.graphic.symbolName&&n[a].r,this.graphic.attr(w(n[a],f?{x:c-
f,y:d-f,width:2*f,height:2*f}:{}));else{if(a&&i)if(f=i.radius,l=l.symbol||e.symbol,k&&k.currentSymbol!==l&&(k=k.destroy()),k)k[b?"animate":"attr"]({x:c-f,y:d-f});else e.stateMarkerGraphic=k=m.renderer.symbol(l,c-f,d-f,2*f,2*f).attr(n[a]).add(e.markerGroup),k.currentSymbol=l;if(k)k[a&&m.isInsidePlot(c,d,m.inverted)?"show":"hide"]()}this.state=a}}});s(M.prototype,{onMouseOver:function(){var a=this.chart,b=a.hoverSeries;if(b&&b!==this)b.onMouseOut();this.options.events.mouseOver&&I(this,"mouseOver");
this.setState("hover");a.hoverSeries=this},onMouseOut:function(){var a=this.options,b=this.chart,c=b.tooltip,d=b.hoverPoint;if(d)d.onMouseOut();this&&a.events.mouseOut&&I(this,"mouseOut");c&&!a.stickyTracking&&(!c.shared||this.noSharedTooltip)&&c.hide();this.setState();b.hoverSeries=null},setState:function(a){var b=this.options,c=this.graph,d=this.graphNeg,e=b.states,b=b.lineWidth,a=a||"";if(this.state!==a)this.state=a,e[a]&&e[a].enabled===!1||(a&&(b=e[a].lineWidth||b+1),c&&!c.dashstyle&&(a={"stroke-width":b},
c.attr(a),d&&d.attr(a)))},setVisible:function(a,b){var c=this,d=c.chart,e=c.legendItem,f,g=d.options.chart.ignoreHiddenSeries,h=c.visible;f=(c.visible=a=c.userOptions.visible=a===u?!h:a)?"show":"hide";p(["group","dataLabelsGroup","markerGroup","tracker"],function(a){if(c[a])c[a][f]()});if(d.hoverSeries===c)c.onMouseOut();e&&d.legend.colorizeItem(c,a);c.isDirty=!0;c.options.stacking&&p(d.series,function(a){if(a.options.stacking&&a.visible)a.isDirty=!0});p(c.linkedSeries,function(b){b.setVisible(a,
!1)});if(g)d.isDirtyBox=!0;b!==!1&&d.redraw();I(c,f)},setTooltipPoints:function(a){var b=[],c,d,e=this.xAxis,f=e&&e.getExtremes(),g=e?e.tooltipLen||e.len:this.chart.plotSizeX,h,i,j=[];if(!(this.options.enableMouseTracking===!1||this.singularTooltips)){if(a)this.tooltipPoints=null;p(this.segments||this.points,function(a){b=b.concat(a)});e&&e.reversed&&(b=b.reverse());this.orderTooltipPoints&&this.orderTooltipPoints(b);a=b.length;for(i=0;i<a;i++)if(e=b[i],c=e.x,c>=f.min&&c<=f.max){h=b[i+1];c=d===u?
0:d+1;for(d=b[i+1]?E(t(0,S((e.clientX+(h?h.wrappedClientX||h.clientX:g))/2)),g):g;c>=0&&c<=d;)j[c++]=e}this.tooltipPoints=j}},show:function(){this.setVisible(!0)},hide:function(){this.setVisible(!1)},select:function(a){this.selected=a=a===u?!this.selected:a;if(this.checkbox)this.checkbox.checked=a;I(this,a?"select":"unselect")},drawTracker:R.drawTrackerGraph});s(Q,{Axis:ka,Chart:Ya,Color:wa,Point:Fa,Tick:Sa,Renderer:Za,Series:M,SVGElement:ta,SVGRenderer:pa,arrayMin:Na,arrayMax:Ba,charts:Y,dateFormat:bb,
format:Ia,pathAnim:ub,getOptions:function(){return L},hasBidiBug:Ob,isTouchDevice:Jb,numberFormat:Ga,seriesTypes:J,setOptions:function(a){L=w(!0,L,a);Cb();return L},addEvent:C,removeEvent:U,createElement:V,discardElement:Pa,css:D,each:p,extend:s,map:Ua,merge:w,pick:o,splat:na,extendClass:ja,pInt:x,wrap:Ma,svg:X,canvas:ca,vml:!X&&!ca,product:"Highcharts",version:"3.0.10"})})();
config/plugins/visualizations/charts/static/plugins/nv.d3.js
-14330
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config/plugins/visualizations/charts/static/plugins/nv.d3.css → config/plugins/visualizations/charts/static/plugins/nvd3/nv.d3.css
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config/plugins/visualizations/charts/static/plugins/nvd3/nv.d3.js
+6
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config/plugins/visualizations/charts/static/views/editor.js
+19 -54
View File
@@ -1,8 +1,8 @@
// dependencies
define(['mvc/ui/ui-tabs', 'plugin/library/ui-table', 'plugin/library/ui', 'mvc/ui/ui-portlet', 'utils/utils',
define(['mvc/ui/ui-tabs', 'plugin/library/ui', 'mvc/ui/ui-portlet', 'utils/utils',
'plugin/models/chart', 'plugin/models/group',
'plugin/views/group', 'plugin/views/settings'],
function(Tabs, Table, Ui, Portlet, Utils, Chart, Group, GroupView, SettingsView) {
'plugin/views/group', 'plugin/views/settings', 'plugin/views/types'],
function(Tabs, Ui, Portlet, Utils, Chart, Group, GroupView, SettingsView, TypesView) {
// widget
return Backbone.View.extend(
@@ -61,62 +61,27 @@ return Backbone.View.extend(
});
//
// table with chart types
// grid with chart types
//
this.table = new Table.View({
header : false,
onconfirm : function(type) {
if (self.chart.groups.length > 0) {
// show modal
self.app.modal.show({
title : 'Switching to another chart type?',
body : 'If you continue your settings and selections will be cleared.',
buttons : {
'Cancel' : function() {
// hide modal
self.app.modal.hide();
},
'Continue' : function() {
// hide modal
self.app.modal.hide();
// confirm
self.table.value(type);
}
}
});
} else {
// confirm
self.table.value(type);
}
},
onchange : function(type) {
this.types = new TypesView(app, {
onchange : function(type) {
// reset type relevant chart content
self.chart.groups.reset();
self.chart.settings.clear();
// update chart type
self.chart.set({type: type});
// set modified flag
self.chart.set('modified', true);
},
ondblclick : function(chart_id) {
self.tabs.show('settings');
},
content: 'No chart types available'
});
// load chart types into table
var types_n = 0;
var types = app.types.attributes;
for (var id in types){
var chart_type = types[id];
this.table.add (++types_n + '.');
if (chart_type.execute) {
this.table.add(chart_type.title + ' (requires processing)');
} else {
this.table.add (chart_type.title);
// show viewport
self.app.go('viewer');
// save chart
self._saveChart();
}
this.table.append(id);
}
});
//
// tabs
@@ -146,7 +111,7 @@ return Backbone.View.extend(
$main.append(Utils.wrap((new Ui.Label({ title : 'Provide a chart title:'})).$el));
$main.append(Utils.wrap(this.title.$el));
$main.append(Utils.wrap((new Ui.Label({ title : 'Select a chart type:'})).$el));
$main.append(Utils.wrap(this.table.$el));
$main.append(Utils.wrap(this.types.$el));
// add tab
this.tabs.add({
@@ -184,7 +149,7 @@ return Backbone.View.extend(
self._refreshTitle();
});
this.chart.on('change:type', function(chart) {
self.table.value(chart.get('type'));
self.types.value(chart.get('type'));
});
this.chart.on('reset', function(chart) {
self._resetChart();
@@ -294,7 +259,7 @@ return Backbone.View.extend(
_resetChart: function() {
// reset chart details
this.chart.set('id', Utils.uuid());
this.chart.set('type', 'bardiagram');
this.chart.set('type', 'nvd3_bar');
this.chart.set('dataset_id', this.app.options.config.dataset_id);
this.chart.set('title', 'New Chart');
@@ -306,7 +271,7 @@ return Backbone.View.extend(
_saveChart: function() {
// update chart data
this.chart.set({
type : this.table.value(),
type : this.types.value(),
title : this.title.value(),
date : Utils.time()
});
config/plugins/visualizations/charts/static/views/group.js
+23 -21
View File
@@ -5,9 +5,6 @@ define(['plugin/library/ui-table', 'plugin/library/ui', 'utils/utils'],
// widget
return Backbone.View.extend(
{
// columns
columns: [],
// initialize
initialize: function(app, options) {
// link app
@@ -121,28 +118,33 @@ return Backbone.View.extend(
// get dataset
this.app.datasets.request({id : dataset_id}, function(dataset) {
// configure columns
self.columns = [];
var meta = dataset.metadata_column_types;
for (var key in meta) {
// check type
if(meta[key] == 'int' || meta[key] == 'float') {
// add to selection
self.columns.push({
'label' : 'Column: ' + (parseInt(key) + 1) + ' [' + meta[key] + ']',
'value' : key
});
}
}
// update select fields
for (var key in list) {
list[key].update(self.columns);
list[key].show();
for (var id in list) {
// is a numeric number required
var is_label = chart_settings.columns[id].is_label;
// configure columns
var columns = [];
var meta = dataset.metadata_column_types;
for (var key in meta) {
// check type
if ((!is_label && (meta[key] == 'int' || meta[key] == 'float')) || is_label) {
// add to selection
columns.push({
'label' : 'Column: ' + (parseInt(key) + 1) + ' [' + meta[key] + ']',
'value' : key
});
}
}
// list
list[id].update(columns);
list[id].show();
}
// loading
self.chart.state('wait', 'Metadata initialized...');
self.chart.state('ok', 'Metadata initialized...');
// unregister
self.chart.deferred.done(process_id);
config/plugins/visualizations/charts/static/views/settings.js
+1 -1
View File
@@ -44,7 +44,7 @@ return Backbone.View.extend(
var chart_definition = this.app.types.get(chart_type);
// set title
this.form.title(chart_definition.title + ':');
this.form.title(chart_definition.category + ' - ' + chart_definition.title + ':');
// update table form model
this.form.update(chart_definition.settings, this.chart.settings);
config/plugins/visualizations/charts/static/views/types.js
+133
View File
@@ -0,0 +1,133 @@
define(['utils/utils', 'plugin/library/ui'], function(Utils, Ui) {
return Backbone.View.extend(
{
// defaults options
optionsDefault: {
onchange : null,
ondblclick : null
},
// events
events : {
'click' : '_onclick',
'dblclick' : '_ondblclick'
},
// initialize
initialize : function(app, options) {
// link app
this.app = app;
// configure options
this.options = Utils.merge(options, this.optionsDefault);
// create new element
var $el = $('<div class="charts-grid"/>');
// set element
this.setElement($el);
// load chart types into categories
var categories = {};
var types = app.types.attributes;
for (var id in types) {
var type = types[id];
var category = type.category;
if (!categories[category]) {
categories[category] = {};
}
categories[category][id] = type;
}
// add categories and charts to screen
for (var category in categories) {
// create empty element
var $el = $('<div style="clear: both;"/>')
// add header label
$el.append(Utils.wrap(this._template_header({title: category})));
// add chart types
for (var id in categories[category]) {
var type = categories[category][id];
$el.append(Utils.wrap(this._template_item({
id : id,
title : type.title,
url : config.app_root + 'charts/' + id + '/logo.png'
})));
}
// add to view
this.$el.append(Utils.wrap($el));
}
},
// value
value: function(new_value) {
// get current element
var before = this.$el.find('.current').attr('id');
// check if new_value is defined
if (new_value !== undefined) {
// remove current class
this.$el.find('.current').removeClass('current');
// add current class
this.$el.find('#' + new_value).addClass('current');
}
// get current id/value
var after = this.$el.find('.current').attr('id');
if(after === undefined) {
return null;
} else {
// fire onchange
if (after != before && this.options.onchange) {
this.options.onchange(new_value);
}
// return current value
return after;
}
},
// onclick
_onclick: function(e) {
var old_value = this.value();
var new_value = $(e.target).closest('.item').attr('id');
if (new_value != '') {
if (new_value && old_value != new_value) {
this.value(new_value);
}
}
},
// ondblclick
_ondblclick: function(e) {
var value = this.value();
if (value && this.options.ondblclick) {
this.options.ondblclick(value);
}
},
// template
_template_header: function(options) {
return '<div class="header">' +
'&bull; ' + options.title +
'<div>';
},
// template
_template_item: function(options) {
return '<div id="' + options.id + '" class="item">' +
'<img class="image" src="' + options.url + '">' +
'<div class="title">' + options.title + '</div>' +
'<div>';
}
});
});
config/plugins/visualizations/charts/static/views/viewer.js
+1 -1
View File
@@ -29,7 +29,7 @@ return Backbone.View.extend(
edit_button: new Ui.ButtonIcon({
icon : 'fa-edit',
tooltip : 'Customize this chart',
title : 'Customize',
title : 'Editor',
onclick : function() {
// attempt to load chart editor
self._wait (self.chart, function() {
config/plugins/visualizations/charts/static/views/viewport.js
+121 -63
View File
@@ -3,11 +3,14 @@ define(['mvc/ui/ui-portlet', 'plugin/library/ui', 'utils/utils'],
function(Portlet, Ui, Utils) {
// widget
return Backbone.View.extend(
{
return Backbone.View.extend({
// list of canvas elements
container_list: [],
canvas_list: [],
// initialize
initialize: function(app, options)
{
initialize: function(app, options) {
// link app
this.app = app;
@@ -20,8 +23,11 @@ return Backbone.View.extend(
// create element
this.setElement($(this._template()));
// create svg element
this._create_svg();
// use full screen for viewer
this._fullscreen(this.$el, 80);
// create canvas element
this._createContainer('div');
// events
var self = this;
@@ -33,6 +39,7 @@ return Backbone.View.extend(
this.chart.on('set:state', function() {
// get info element
var $info = self.$el.find('#info');
var $container = self.$el.find('container');
// get icon
var $icon = $info.find('#icon');
@@ -44,17 +51,21 @@ return Backbone.View.extend(
$info.show();
$info.find('#text').html(self.chart.get('state_info'));
// hide containers
$container.hide();
// check status
var state = self.chart.get('state');
switch (state) {
case 'ok':
$info.hide();
$container.show()
break;
case 'failed':
$icon.addClass('fa fa-warning');
$icon.addClass('icon fa fa-warning');
break;
default:
$icon.addClass('fa fa-spinner fa-spin');
$icon.addClass('icon fa fa-spinner fa-spin');
}
});
},
@@ -69,42 +80,84 @@ return Backbone.View.extend(
this.$el.hide();
},
// create
_create_svg: function() {
// clear svg
if (this.svg) {
this.svg.remove();
// resize to fullscreen
_fullscreen: function($el, margin) {
// fix size
$el.css('height', $(window).height() - margin);
// catch window resize event
$(window).resize(function () {
$el.css('height', $(window).height() - margin);
});
},
// creates n canvas elements
_createContainer: function(tag, n) {
// check size of requested canvas elements
n = n || 1;
// clear previous canvas elements
for (var i in this.container_list) {
this.container_list[i].remove();
}
// create
this.$el.append($(this._template_svg()));
// reset lists
this.container_list = [];
this.canvas_list = [];
// find svg element
this.svg_el = this.$el.find('svg');
this.svg = d3.select(this.svg_el[0]);
// create requested canvas elements
for (var i = 0; i < n; i++) {
// create element
var canvas_el = $(this._templateContainer(tag, parseInt(100 / n)));
// add to view
this.$el.append(canvas_el);
// add to list
this.container_list[i] = canvas_el;
// add a separate list for canvas elements
if (tag == 'svg') {
this.canvas_list[i] = d3.select(canvas_el.find('#canvas')[0]);
} else {
this.canvas_list[i] = canvas_el.find('#canvas');
}
}
},
// add
_draw: function(chart) {
// link this
var self = this;
// create svg element
this._create_svg();
// set chart state
chart.state('wait', 'Please wait...');
// register process
var process_id = chart.deferred.register();
// identify chart type
var chart_type = chart.get('type');
var chart_settings = this.app.types.get(chart_type);
// load chart settings
this.chart_settings = this.app.types.get(chart_type);
// read settings
var use_panels = this.chart_settings.use_panels;
// determine number of svg/div-elements to create
var n_panels = 1;
if (use_panels) {
n_panels = chart.groups.length;
}
// create canvas element and add to canvas list
this._createContainer(this.chart_settings.tag, n_panels);
// set chart state
chart.state('wait', 'Please wait...');
// clean up data if there is any from previous jobs
if (!chart_settings.execute ||
(chart_settings.execute && chart.get('modified'))) {
if (!this.chart_settings.execute ||
(this.chart_settings.execute && chart.get('modified'))) {
// reset jobs
this.app.jobs.cleanup(chart);
@@ -114,25 +167,20 @@ return Backbone.View.extend(
// create chart view
var self = this;
require(['plugin/charts/' + chart_type + '/' + chart_type], function(ChartView) {
require(['plugin/charts/' + chart_type + '/wrapper'], function(ChartView) {
// create chart
var view = new ChartView(self.app, {svg : self.svg});
var view = new ChartView(self.app, {canvas : self.canvas_list});
// request data
if (chart_settings.execute) {
if (chart.get('dataset_id_job') == '') {
// submit job
self.app.jobs.submit(chart, self._defaultSettingsString(chart), self._defaultRequestString(chart),
function() {
view.draw(process_id, chart, self._defaultRequestDictionary(chart));
},
function() {
chart.deferred.done(process_id);
});
} else {
// load data into view
view.draw(process_id, chart, self._defaultRequestDictionary(chart));
}
if (self.chart_settings.execute) {
self.app.jobs.request(chart, self._defaultSettingsString(chart), self._defaultRequestString(chart),
function() {
view.draw(process_id, chart, self._defaultRequestDictionary(chart));
},
function() {
chart.deferred.done(process_id);
}
);
} else {
// load data into view
view.draw(process_id, chart, self._defaultRequestDictionary(chart));
@@ -143,17 +191,19 @@ return Backbone.View.extend(
// create default chart request
_defaultRequestString: function(chart) {
// get chart settings
var chart_settings = this.app.types.get(chart.get('type'));
// configure request
var request_string = '';
// add groups to data request
var group_index = 0;
var self = this;
chart.groups.each(function(group) {
for (var key in chart_settings.columns) {
request_string += key + '_' + (++group_index) + ':' + (parseInt(group.get(key)) + 1) + ', ';
// increase group counter
group_index++;
// add selected columns to column string
for (var key in self.chart_settings.columns) {
request_string += key + '_' + group_index + ':' + (parseInt(group.get(key)) + 1) + ', ';
}
});
@@ -179,16 +229,13 @@ return Backbone.View.extend(
// create default chart request
_defaultRequestDictionary: function(chart) {
// get chart settings
var chart_settings = this.app.types.get(chart.get('type'));
// configure request
var request_dictionary = {
groups : []
};
// update request dataset id
if (chart_settings.execute) {
if (this.chart_settings.execute) {
request_dictionary.id = chart.get('dataset_id_job');
} else {
request_dictionary.id = chart.get('dataset_id');
@@ -196,12 +243,20 @@ return Backbone.View.extend(
// add groups to data request
var group_index = 0;
var self = this;
chart.groups.each(function(group) {
// add columns
var columns = {};
for (var key in chart_settings.columns) {
columns[key] = group.get(key);
for (var column_key in self.chart_settings.columns) {
// get settings for column
var column_settings = self.chart_settings.columns[column_key];
// add to columns
columns[column_key] = {
index : group.get(column_key),
is_label : column_settings.is_label
}
}
// add group data
@@ -217,18 +272,21 @@ return Backbone.View.extend(
// template
_template: function() {
return '<div style="height: 100%; min-height: 50px;">' +
'<div id="info" style="position: absolute; margin-left: 10px; margin-top: 10px; margin-bottom: 50px;">' +
'<span id="icon" style="font-size: 1.2em; display: inline-block;"/>' +
'<span id="text" style="position: relative; margin-left: 5px; top: -1px; font-size: 1.0em;"/>' +
return '<div class="charts-viewport">' +
'<div id="info" class="info">' +
'<span id="icon" class="icon" />' +
'<span id="text" class="text" />' +
'</div>' +
'</div>';
},
// template svg element
_template_svg: function() {
return '<svg style="height: calc(100% - 80px)"/>';
},
// template svg/div element
_templateContainer: function(tag, width) {
return '<div class="charts-viewport-container" style="width:' + width + '%;">' +
'<div id="menu"/>' +
'<' + tag + ' id="canvas" class="charts-viewport-canvas">' +
'</div>';
}
});
config/plugins/visualizations/charts/templates/charts.mako
+14 -3
View File
@@ -22,14 +22,24 @@
${h.css( 'base' )}
## install nv.d3 module
${h.javascript_link( app_root + "plugins/nv.d3.js" )}
${h.stylesheet_link( app_root + "plugins/nv.d3.css" )}
${h.javascript_link( app_root + "plugins/nvd3/nv.d3.js" )}
${h.stylesheet_link( app_root + "plugins/nvd3/nv.d3.css" )}
## install highcharts module
${h.javascript_link( app_root + "plugins/highcharts/highcharts.js" )}
${h.javascript_link( app_root + "plugins/highcharts/highcharts-more.js" )}
## install heat map module
${h.stylesheet_link( app_root + "plugins/heatmap/heatmap.css" )}
## install boxplot module
##${h.javascript_link( app_root + "plugins/box.js" )}
## load merged/minified code
${h.javascript_link( app_root + "build-app.js" )}
## install default css
${h.stylesheet_link( app_root + "app.css" )}
</head>
<body>
@@ -37,7 +47,8 @@
// get configuration
var config = {
root : '${root}'
root : '${root}',
app_root : '${app_root}'
};
// link galaxy
config/plugins/visualizations/circster/config/circster.xml
-2
View File
@@ -21,8 +21,6 @@
<param_modifier type="string" modifies="dataset_id">hda_ldda</param_modifier>
<param type="dbkey">dbkey</param>
</params>
<!-- template_root and template are currently ignored for the 'built-in' visualizations -->
<template_root>webapps/galaxy/visualization</template_root>
<template>circster.mako</template>
<render_target>_top</render_target>
</visualization>
config/plugins/visualizations/common/templates/visualization_base.mako
+1 -1
View File
@@ -14,7 +14,7 @@
${self.get_body()}
</%def>
## render this as it's own page
## render this as its own page
<%def name="as_page()">
<!DOCTYPE HTML>
<html>
config/plugins/visualizations/phyloviz/config/phyloviz.xml
-2
View File
@@ -14,8 +14,6 @@
<param type="dataset" var_name_in_template="hda" required="true">dataset_id</param>
<param type="integer" default="0">tree_index</param>
</params>
<!-- template_root and template are currently ignored for the 'built-in' visualizations -->
<template_root>webapps/galaxy/visualization</template_root>
<template>phyloviz.mako</template>
<render_target>_top</render_target>
</visualization>
config/plugins/visualizations/sweepster/config/sweepster.xml
-2
View File
@@ -20,8 +20,6 @@
<param type="hda_or_ldda" var_name_in_template="dataset">dataset_id</param>
<param_modifier type="string" modifies="dataset_id">hda_ldda</param_modifier>
</params>
<!-- template_root and template are currently ignored for the 'built-in' visualizations -->
<template_root>webapps/galaxy/visualization</template_root>
<template>sweepster.mako</template>
<render_target>_top</render_target>
</visualization>
config/plugins/visualizations/trackster/config/trackster.xml
-2
View File
@@ -23,8 +23,6 @@
<param type="genome_region">genome_region</param>
<param type="dbkey">dbkey</param>
</params>
<!-- template_root and template are currently ignored for the 'built-in' visualizations -->
<template_root>webapps/galaxy/visualization/tracks</template_root>
<template>browser.mako</template>
<render_target>_top</render_target>
</visualization>
config/plugins/visualizations/visualization.dtd
-4
View File
@@ -126,10 +126,6 @@
var_name_in_template CDATA #IMPLIED
>
<!-- template_root: the directory to search for the template relative to templates/webapps/galaxy
(optional) DEFAULT: visualizations
-->
<!ELEMENT template_root (#PCDATA)>
<!-- template: the template used to render the visualization. REQUIRED -->
<!ELEMENT template (#PCDATA)>
<!-- render_target: used as the target attribute of the link to the visualization.
datatypes_conf.xml.sample
+2
View File
@@ -26,6 +26,7 @@
</datatype>
<datatype extension="bedgraph" type="galaxy.datatypes.interval:BedGraph" display_in_upload="true">
<converter file="bedgraph_to_bigwig_converter.xml" target_datatype="bigwig"/>
<display file="igb/bedgraph.xml" />
</datatype>
<datatype extension="bedstrict" type="galaxy.datatypes.interval:BedStrict" />
<datatype extension="bed6" type="galaxy.datatypes.interval:Bed6">
@@ -98,6 +99,7 @@
<datatype extension="gtf" type="galaxy.datatypes.interval:Gtf" display_in_upload="true">
<converter file="gff_to_interval_index_converter.xml" target_datatype="interval_index"/>
<converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/>
<display file="igb/gtf.xml" />
</datatype>
<datatype extension="toolshed.gz" type="galaxy.datatypes.binary:Binary" mimetype="multipart/x-gzip" subclass="True" />
<datatype extension="h5" type="galaxy.datatypes.binary:Binary" mimetype="application/octet-stream" subclass="True" />
display_applications/igb/bam.xml
+11 -55
View File
@@ -1,58 +1,14 @@
<display id="igb_bam" version="0.0.0" name="display in IGB">
<link id="Local" name="Local">
<url>http://localhost:7085/UnibrowControl?version=${bam_file.dbkey}&amp;feature_url_0=${bam_file.url}&amp;sym_name_0=${thenicename}&amp;sym_method_0=${bam_file.url}&amp;query_url=${bam_file.url}&amp;server_url=galaxy</url>
<param type="data" name="bam_file_for_name" viewable="False"/>
<param type="template" name="thenicename" viewable="False" strip="True">
#import re
#set nm=$bam_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bai_file" url="${thenicename}_${DATASET_HASH}.bam.bai" metadata="bam_index" strip_https="True" />
<param type="data" name="bam_file" url="${thenicename}_${DATASET_HASH}.bam" strip_https="True" />
</link>
<link id="View" name="View">
<url>http://bioviz.org/igb/galaxy.html?version=${bam_file.dbkey}&amp;feature_url_0=${bam_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bam_file.url}&amp;query_url=${bam_file.url}&amp;server_url=galaxy</url>
<param type="data" name="bam_file_for_name" viewable="False"/>
<param type="template" name="niceName" viewable="False" strip="True">
#import re
#set nm=$bam_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bai_file" url="${niceName}.bam.bai" metadata="bam_index" strip_https="True" />
<param type="data" name="bam_file" url="${niceName}.bam" strip_https="True" />
</link>
<link id="Web" name="Web">
<url>$jnlp.url</url>
<param type="data" name="bam_file_for_name" viewable="False"/>
<param type="template" name="thenicename" viewable="False" strip="True">
#import re
#set nm=$bam_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bai_file" url="${thenicename}_${DATASET_HASH}.bam.bai" metadata="bam_index" strip_https="True" />
<param type="data" name="bam_file" url="${thenicename}_${DATASET_HASH}.bam" strip_https="True" />
<param type="template" name="jnlp" url="${thenicename}_${DATASET_HASH}.jnlp" viewable="True" strip_https="True" mimetype="application/x-java-jnlp-file">
&lt;?xml version=&quot;1.0&quot; encoding=&quot;utf-8&quot;?&gt;
&lt;jnlp spec=&quot;6.0+&quot; version=&quot;&quot; codebase=&quot;http://www.bioviz.org/igb/releases/current/&quot; &gt;
&lt;information&gt;
&lt;title&gt;IGB&lt;/title&gt;
&lt;vendor&gt;Genoviz Project&lt;/vendor&gt;
&lt;homepage href=&quot;http://genoviz.sourceforge.net/&quot; /&gt;
&lt;description&gt;Integrated Genome Browser&lt;/description&gt;
&lt;icon href=&quot;igb.gif&quot;/&gt;
&lt;offline-allowed/&gt;
&lt;shortcut online=&quot;true&quot;&gt;
&lt;desktop/&gt;
&lt;menu submenu=&quot;IGB&quot; /&gt;
&lt;/shortcut&gt;
&lt;/information&gt;
&lt;security&gt;
&lt;all-permissions/&gt;
&lt;/security&gt;
&lt;resources&gt;
&lt;java version=&quot;1.6+&quot; initial-heap-size=&quot;32m&quot; max-heap-size=&quot;1024m&quot;/&gt;
&lt;jar href=&quot;igb_exe.jar&quot; main=&quot;true&quot; /&gt;
&lt;jar href=&quot;igb-i18n.jar&quot; /&gt;
&lt;property name=&quot;apple.laf.useScreenMenuBar&quot; value=&quot;true&quot; /&gt;
&lt;property name=&quot;http.agent&quot; value=&quot;IGB (Webstart)&quot; /&gt;
&lt;/resources&gt;
&lt;application-desc main-class=&quot;com.affymetrix.main.Main&quot;&gt;
&lt;argument&gt;-prefs&lt;/argument&gt;
&lt;argument&gt;http://www.bioviz.org/igb/releases/current/igb_prefs.xml&lt;/argument&gt;
&lt;argument&gt;-href&lt;/argument&gt;
&lt;argument&gt;http://localhost:7085/UnibrowControl?version=${bam_file.dbkey}&amp;feature_url_0=${bam_file.url}&amp;sym_name_0=${thenicename}&amp;sym_method_0=${bam_file.url}&amp;query_url=${bam_file.url}&amp;server_url=galaxy &lt;/argument&gt;
&lt;/application-desc&gt;
&lt;/jnlp&gt;
</param>
</link>
</display>
display_applications/igb/bb.xml
+4 -48
View File
@@ -1,58 +1,14 @@
<display id="igb_bb" version="1.0.0" name="display in IGB">
<link id="Local" name="Local">
<url>http://localhost:7085/UnibrowControl?version=${bigbed_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bigbed_file.url}&amp;sym_name_0=${thenicename}&amp;sym_method_0=${bigbed_file.url}&amp;query_url=${bigbed_file.url}&amp;server_url=galaxy</url>
<link id="View" name="View">
<url>http://bioviz.org/igb/galaxy.html?version=${bigbed_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bigbed_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bigbed_file.url}&amp;query_url=${bigbed_file.url}&amp;server_url=galaxy</url>
<param type="data" name="bigbed_file_for_name" viewable="False"/>
<param type="template" name="thenicename" viewable="False" strip="True">
<param type="template" name="niceName" viewable="False" strip="True">
#import re
#set nm=$bigbed_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bigbed_file" url="${thenicename}_${DATASET_HASH}.bigbed" strip_https="True" />
</link>
<link id="Web" name="Web">
<url>$jnlp.url</url>
<param type="data" name="bigbed_file_for_name" viewable="False"/>
<param type="template" name="thenicename" viewable="False" strip="True">
#import re
#set nm=$bigbed_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bigbed_file" url="${thenicename}_${DATASET_HASH}.bigbed" strip_https="True" />
<param type="template" name="jnlp" url="${thenicename}_${DATASET_HASH}.jnlp" viewable="True" strip_https="True" mimetype="application/x-java-jnlp-file">
&lt;?xml version=&quot;1.0&quot; encoding=&quot;utf-8&quot;?&gt;
&lt;jnlp spec=&quot;6.0+&quot; version=&quot;&quot; codebase=&quot;http://www.bioviz.org/igb/releases/current/&quot; &gt;
&lt;information&gt;
&lt;title&gt;IGB&lt;/title&gt;
&lt;vendor&gt;Genoviz Project&lt;/vendor&gt;
&lt;homepage href=&quot;http://genoviz.sourceforge.net/&quot; /&gt;
&lt;description&gt;Integrated Genome Browser&lt;/description&gt;
&lt;icon href=&quot;igb.gif&quot;/&gt;
&lt;offline-allowed/&gt;
&lt;shortcut online=&quot;true&quot;&gt;
&lt;desktop/&gt;
&lt;menu submenu=&quot;IGB&quot; /&gt;
&lt;/shortcut&gt;
&lt;/information&gt;
&lt;security&gt;
&lt;all-permissions/&gt;
&lt;/security&gt;
&lt;resources&gt;
&lt;java version=&quot;1.6+&quot; initial-heap-size=&quot;32m&quot; max-heap-size=&quot;1024m&quot;/&gt;
&lt;jar href=&quot;igb_exe.jar&quot; main=&quot;true&quot; /&gt;
&lt;jar href=&quot;igb-i18n.jar&quot; /&gt;
&lt;property name=&quot;apple.laf.useScreenMenuBar&quot; value=&quot;true&quot; /&gt;
&lt;property name=&quot;http.agent&quot; value=&quot;IGB (Webstart)&quot; /&gt;
&lt;/resources&gt;
&lt;application-desc main-class=&quot;com.affymetrix.main.Main&quot;&gt;
&lt;argument&gt;-prefs&lt;/argument&gt;
&lt;argument&gt;http://www.bioviz.org/igb/releases/current/igb_prefs.xml&lt;/argument&gt;
&lt;argument&gt;-href&lt;/argument&gt;
&lt;argument&gt;http://localhost:7085/UnibrowControl?version=${bigbed_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bigbed_file.url}&amp;sym_name_0=${thenicename}&amp;sym_method_0=${bigbed_file.url}&amp;query_url=${bigbed_file.url}&amp;server_url=galaxy &lt;/argument&gt;
&lt;/application-desc&gt;
&lt;/jnlp&gt;
</param>
<param type="data" name="bigbed_file" url="${niceName}.bigbed" strip_https="True" />
</link>
</display>
display_applications/igb/bed.xml
+13 -69
View File
@@ -1,73 +1,17 @@
<display id="igb_bed" version="1.0.0" name="display in IGB">
<link id="Local" name="Local">
<url>http://localhost:7085/UnibrowControl?version=${bed_file.dbkey}&amp;${position}&amp;loadresidues=false&amp;feature_url_0=${bed_file.url}&amp;sym_name_0=${thenicename}&amp;sym_method_0=${bed_file.url}&amp;query_url=${bed_file.url}&amp;server_url=galaxy</url>
<param type="data" name="bed_file_for_name" viewable="False"/>
<param type="template" name="thenicename" viewable="False" strip="True">
#import re
#set nm=$bed_file_for_name.name
${re.sub('\W',"_",nm)}
<link id="View" name="View">
<url>$bioviz</url>
<param type="data" name="bed_file_for_name" viewable="False"/>
<param type="template" name="niceName" viewable="False" strip="True">
#import re
#set nm=$bed_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bed_file" url="${niceName}.bed" strip_https="True" />
<param type="template" name="bioviz" strip="True" >
http://bioviz.org/igb/galaxy.html?version=${bed_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bed_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bed_file.url}&amp;query_url=${bed_file.url}&amp;server_url=galaxy
</param>
<param type="data" name="bed_file" url="${thenicename}_${DATASET_HASH}.bed" strip_https="True" />
<param type="template" name="position" strip="True" >
#set chrom, start, end = $bed_file.datatype.get_estimated_display_viewport( $bed_file )
#if $chrom is not None:
seqid=${chrom}&amp;start=${start}&amp;end=${int(end) + 1}
#else:
seqid=&amp;start=&amp;end=
#end if
</param>
</link>
<link id="Web" name="Web">
<url>$jnlp.url</url>
<param type="data" name="bed_file_for_name" viewable="False"/>
<param type="template" name="thenicename" viewable="False" strip="True">
#import re
#set nm=$bed_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bed_file" url="${thenicename}_${DATASET_HASH}.bed" strip_https="True" />
<param type="template" name="position" strip="True" >
#set chrom, start, end = $bed_file.datatype.get_estimated_display_viewport( $bed_file )
#if $chrom is not None:
seqid=${chrom}&amp;start=${start}&amp;end=${int(end) + 1}
#else:
seqid=&amp;start=&amp;end=
#end if
</param>
<param type="template" name="jnlp" url="${thenicename}_${DATASET_HASH}.jnlp" viewable="True" strip_https="True" mimetype="application/x-java-jnlp-file">
&lt;?xml version=&quot;1.0&quot; encoding=&quot;utf-8&quot;?&gt;
&lt;jnlp spec=&quot;6.0+&quot; version=&quot;&quot; codebase=&quot;http://www.bioviz.org/igb/releases/current/&quot; &gt;
&lt;information&gt;
&lt;title&gt;IGB&lt;/title&gt;
&lt;vendor&gt;Genoviz Project&lt;/vendor&gt;
&lt;homepage href=&quot;http://genoviz.sourceforge.net/&quot; /&gt;
&lt;description&gt;Integrated Genome Browser&lt;/description&gt;
&lt;icon href=&quot;igb.gif&quot;/&gt;
&lt;offline-allowed/&gt;
&lt;shortcut online=&quot;true&quot;&gt;
&lt;desktop/&gt;
&lt;menu submenu=&quot;IGB&quot; /&gt;
&lt;/shortcut&gt;
&lt;/information&gt;
&lt;security&gt;
&lt;all-permissions/&gt;
&lt;/security&gt;
&lt;resources&gt;
&lt;java version=&quot;1.6+&quot; initial-heap-size=&quot;32m&quot; max-heap-size=&quot;1024m&quot;/&gt;
&lt;jar href=&quot;igb_exe.jar&quot; main=&quot;true&quot; /&gt;
&lt;jar href=&quot;igb-i18n.jar&quot; /&gt;
&lt;property name=&quot;apple.laf.useScreenMenuBar&quot; value=&quot;true&quot; /&gt;
&lt;property name=&quot;http.agent&quot; value=&quot;IGB (Webstart)&quot; /&gt;
&lt;/resources&gt;
&lt;application-desc main-class=&quot;com.affymetrix.main.Main&quot;&gt;
&lt;argument&gt;-prefs&lt;/argument&gt;
&lt;argument&gt;http://www.bioviz.org/igb/releases/current/igb_prefs.xml&lt;/argument&gt;
&lt;argument&gt;-href&lt;/argument&gt;
&lt;argument&gt;http://localhost:7085/UnibrowControl?version=${bed_file.dbkey}&amp;${position}&amp;loadresidues=false&amp;feature_url_0=${bed_file.url}&amp;sym_name_0=${thenicename}&amp;sym_method_0=${bed_file.url}&amp;query_url=${bed_file.url}&amp;server_url=galaxy &lt;/argument&gt;
&lt;/application-desc&gt;
&lt;/jnlp&gt;
</param>
</link>
</link>
</display>
display_applications/igb/bedgraph.xml
+17
View File
@@ -0,0 +1,17 @@
<display id="igb_bedgraph" version="1.0.0" name="display in IGB">
<link id="View" name="View">
<url>$bioviz</url>
<param type="data" name="bedgraph_file_for_name" viewable="False"/>
<param type="template" name="niceName" viewable="False" strip="True">
#import re
#set nm=$bedgraph_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bedgraph_file" url="${niceName}.bed.bedgraph" strip_https="True" />
<param type="template" name="bioviz" strip="True" >
http://bioviz.org/igb/galaxy.html?version=${bedgraph_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bedgraph_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bedgraph_file.url}&amp;query_url=${bedgraph_file.url}&amp;server_url=galaxy
</param>
</link>
</display>
display_applications/igb/bigwig.xml
+4 -47
View File
@@ -1,14 +1,14 @@
<display id="igb_bigwig" version="1.0.0" name="display in IGB">
<link id="Local" name="Local">
<url>http://localhost:7085/UnibrowControl?version=${bigwig_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bigwig_file.url}&amp;sym_name_0=${thenicename}&amp;sym_method_0=${bigwig_file.url}&amp;query_url=${bigwig_file.url}&amp;server_url=galaxy</url>
<link id="View" name="View">
<url>http://bioviz.org/igb/galaxy.html?version=${bigwig_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bigwig_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${bigwig_file.url}&amp;query_url=${bigwig_file.url}&amp;server_url=galaxy</url>
<param type="data" name="bigwig_file_for_name" viewable="False"/>
<param type="template" name="thenicename" viewable="False" strip="True">
<param type="template" name="niceName" viewable="False" strip="True">
#import re
#set nm=$bigwig_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bigwig_file" url="${thenicename}_${DATASET_HASH}.bigwig" strip_https="True" />
<param type="data" name="bigwig_file" url="${niceName}.bigwig" strip_https="True" />
<!--<param type="template" name="position" strip="True" >
#set chrom, start, end = $bigwig_file.datatype.get_estimated_display_viewport( $bigwig_file )
#if $chrom is not None:
@@ -19,47 +19,4 @@
</param>-->
</link>
<link id="Web" name="Web">
<url>$jnlp.url</url>
<param type="data" name="bigwig_file_for_name" viewable="False"/>
<param type="template" name="thenicename" viewable="False" strip="True">
#import re
#set nm=$bigwig_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="bigwig_file" url="${thenicename}_${DATASET_HASH}.bigwig" strip_https="True" />
<param type="template" name="jnlp" url="${thenicename}_${DATASET_HASH}.jnlp" viewable="True" strip_https="True" mimetype="application/x-java-jnlp-file">
&lt;?xml version=&quot;1.0&quot; encoding=&quot;utf-8&quot;?&gt;
&lt;jnlp spec=&quot;6.0+&quot; version=&quot;&quot; codebase=&quot;http://www.bioviz.org/igb/releases/current/&quot; &gt;
&lt;information&gt;
&lt;title&gt;IGB&lt;/title&gt;
&lt;vendor&gt;Genoviz Project&lt;/vendor&gt;
&lt;homepage href=&quot;http://genoviz.sourceforge.net/&quot; /&gt;
&lt;description&gt;Integrated Genome Browser&lt;/description&gt;
&lt;icon href=&quot;igb.gif&quot;/&gt;
&lt;offline-allowed/&gt;
&lt;shortcut online=&quot;true&quot;&gt;
&lt;desktop/&gt;
&lt;menu submenu=&quot;IGB&quot; /&gt;
&lt;/shortcut&gt;
&lt;/information&gt;
&lt;security&gt;
&lt;all-permissions/&gt;
&lt;/security&gt;
&lt;resources&gt;
&lt;java version=&quot;1.6+&quot; initial-heap-size=&quot;32m&quot; max-heap-size=&quot;1024m&quot;/&gt;
&lt;jar href=&quot;igb_exe.jar&quot; main=&quot;true&quot; /&gt;
&lt;jar href=&quot;igb-i18n.jar&quot; /&gt;
&lt;property name=&quot;apple.laf.useScreenMenuBar&quot; value=&quot;true&quot; /&gt;
&lt;property name=&quot;http.agent&quot; value=&quot;IGB (Webstart)&quot; /&gt;
&lt;/resources&gt;
&lt;application-desc main-class=&quot;com.affymetrix.main.Main&quot;&gt;
&lt;argument&gt;-prefs&lt;/argument&gt;
&lt;argument&gt;http://www.bioviz.org/igb/releases/current/igb_prefs.xml&lt;/argument&gt;
&lt;argument&gt;-href&lt;/argument&gt;
&lt;argument&gt;http://localhost:7085/UnibrowControl?version=${bigwig_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${bigwig_file.url}&amp;sym_name_0=${thenicename}&amp;sym_method_0=${bigwig_file.url}&amp;query_url=${bigwig_file.url}&amp;server_url=galaxy &lt;/argument&gt;
&lt;/application-desc&gt;
&lt;/jnlp&gt;
</param>
</link>
</display>
display_applications/igb/gtf.xml
+17
View File
@@ -0,0 +1,17 @@
<display id="igb_gtf" version="1.0.0" name="display in IGB">
<link id="View" name="View">
<url>$bioviz</url>
<param type="data" name="gtf_file_for_name" viewable="False"/>
<param type="template" name="niceName" viewable="False" strip="True">
#import re
#set nm=$gtf_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="gtf_file" url="${niceName}.gtf" strip_https="True" />
<param type="template" name="bioviz" strip="True" >
http://bioviz.org/igb/galaxy.html?version=${gtf_file.dbkey}&amp;loadresidues=false&amp;feature_url_0=${gtf_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${gtf_file.url}&amp;query_url=${gtf_file.url}&amp;server_url=galaxy
</param>
</link>
</display>
display_applications/igb/wig.xml
+4 -56
View File
@@ -1,14 +1,14 @@
<display id="igb_wig" version="1.0.0" name="display in IGB">
<link id="Local" name="Local">
<url>http://localhost:7085/UnibrowControl?version=${wig_file.dbkey}&amp;${position}&amp;loadresidues=false&amp;feature_url_0=${wig_file.url}&amp;sym_name_0=${thenicename}&amp;sym_method_0=${wig_file.url}&amp;query_url=${wig_file.url}&amp;server_url=galaxy</url>
<link id="View" name="View">
<url>http://bioviz.org/igb/galaxy.html?version=${wig_file.dbkey}&amp;${position}&amp;loadresidues=false&amp;feature_url_0=${wig_file.url}&amp;sym_name_0=${niceName}&amp;sym_method_0=${wig_file.url}&amp;query_url=${wig_file.url}&amp;server_url=galaxy</url>
<param type="data" name="wig_file_for_name" viewable="False"/>
<param type="template" name="thenicename" viewable="False" strip="True">
<param type="template" name="niceName" viewable="False" strip="True">
#import re
#set nm=$wig_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="wig_file" url="${thenicename}_${DATASET_HASH}.wig" strip_https="True" />
<param type="data" name="wig_file" url="${niceName}.wig" strip_https="True" />
<param type="template" name="position" strip="True" >
#set chrom, start, end = $wig_file.datatype.get_estimated_display_viewport( $wig_file )
#if $chrom is not None:
@@ -18,57 +18,5 @@
#end if
</param>
</link>
<link id="Web" name="Web">
<url>$jnlp.url</url>
<param type="data" name="wig_file_for_name" viewable="False"/>
<param type="template" name="thenicename" viewable="False" strip="True">
#import re
#set nm=$wig_file_for_name.name
${re.sub('\W',"_",nm)}
</param>
<param type="data" name="wig_file" url="${thenicename}_${DATASET_HASH}.wig" strip_https="True" />
<param type="template" name="position" strip="True" >
#set chrom, start, end = $wig_file.datatype.get_estimated_display_viewport( $wig_file )
#if $chrom is not None:
seqid=${chrom}&amp;start=${start}&amp;end=${int(end) + 1}
#else:
seqid=&amp;start=&amp;end=
#end if
</param>
<param type="template" name="jnlp" url="${thenicename}_${DATASET_HASH}.jnlp" viewable="True" strip_https="True" mimetype="application/x-java-jnlp-file">
&lt;?xml version=&quot;1.0&quot; encoding=&quot;utf-8&quot;?&gt;
&lt;jnlp spec=&quot;6.0+&quot; version=&quot;&quot; codebase=&quot;http://www.bioviz.org/igb/releases/current/&quot; &gt;
&lt;information&gt;
&lt;title&gt;IGB&lt;/title&gt;
&lt;vendor&gt;Genoviz Project&lt;/vendor&gt;
&lt;homepage href=&quot;http://genoviz.sourceforge.net/&quot; /&gt;
&lt;description&gt;Integrated Genome Browser&lt;/description&gt;
&lt;icon href=&quot;igb.gif&quot;/&gt;
&lt;offline-allowed/&gt;
&lt;shortcut online=&quot;true&quot;&gt;
&lt;desktop/&gt;
&lt;menu submenu=&quot;IGB&quot; /&gt;
&lt;/shortcut&gt;
&lt;/information&gt;
&lt;security&gt;
&lt;all-permissions/&gt;
&lt;/security&gt;
&lt;resources&gt;
&lt;java version=&quot;1.6+&quot; initial-heap-size=&quot;32m&quot; max-heap-size=&quot;1024m&quot;/&gt;
&lt;jar href=&quot;igb_exe.jar&quot; main=&quot;true&quot; /&gt;
&lt;jar href=&quot;igb-i18n.jar&quot; /&gt;
&lt;property name=&quot;apple.laf.useScreenMenuBar&quot; value=&quot;true&quot; /&gt;
&lt;property name=&quot;http.agent&quot; value=&quot;IGB (Webstart)&quot; /&gt;
&lt;/resources&gt;
&lt;application-desc main-class=&quot;com.affymetrix.main.Main&quot;&gt;
&lt;argument&gt;-prefs&lt;/argument&gt;
&lt;argument&gt;http://www.bioviz.org/igb/releases/current/igb_prefs.xml&lt;/argument&gt;
&lt;argument&gt;-href&lt;/argument&gt;
&lt;argument&gt;http://localhost:7085/UnibrowControl?version=${wig_file.dbkey}&amp;${position}&amp;loadresidues=false&amp;feature_url_0=${wig_file.url}&amp;sym_name_0=${thenicename}&amp;sym_method_0=${wig_file.url}&amp;query_url=${wig_file.url}&amp;server_url=galaxy &lt;/argument&gt;
&lt;/application-desc&gt;
&lt;/jnlp&gt;
</param>
</link>
</display>
dist-eggs.ini
+13 -15
View File
@@ -8,22 +8,20 @@
;
[hosts]
py2.6-linux-i686-ucs2 = stegmaier.bx.psu.edu /afs/bx.psu.edu/project/pythons/linux-i686-ucs2/bin/python2.6
py2.6-linux-i686-ucs4 = stegmaier.bx.psu.edu /afs/bx.psu.edu/project/pythons/linux-i686-ucs4/bin/python2.6
py2.7-linux-i686-ucs2 = stegmaier.bx.psu.edu /afs/bx.psu.edu/project/pythons/linux-i686-ucs2/bin/python2.7
py2.7-linux-i686-ucs4 = stegmaier.bx.psu.edu /afs/bx.psu.edu/project/pythons/linux-i686-ucs4/bin/python2.7
py2.6-linux-x86_64-ucs2 = straub.bx.psu.edu /afs/bx.psu.edu/project/pythons/linux-x86_64-ucs2/bin/python2.6
py2.6-linux-x86_64-ucs4 = straub.bx.psu.edu /afs/bx.psu.edu/project/pythons/linux-x86_64-ucs4/bin/python2.6
py2.7-linux-x86_64-ucs2 = straub.bx.psu.edu /afs/bx.psu.edu/project/pythons/linux-x86_64-ucs2/bin/python2.7
py2.7-linux-x86_64-ucs4 = straub.bx.psu.edu /afs/bx.psu.edu/project/pythons/linux-x86_64-ucs4/bin/python2.7
py2.6-macosx-10.3-fat-ucs2 = weyerbacher.bx.psu.edu /Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6
py2.7-macosx-10.3-fat-ucs2 = weyerbacher.bx.psu.edu /Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
py2.6-macosx-10.6-universal-ucs2 = lion.bx.psu.edu /usr/bin/python2.6
py2.6-linux-i686-ucs2 = stegmaier.bx.psu.edu /afs/bx.psu.edu/project/pythons/py2.6-linux-i686-ucs2/bin/python2.6
py2.6-linux-i686-ucs4 = stegmaier.bx.psu.edu /afs/bx.psu.edu/project/pythons/py2.6-linux-i686-ucs4/bin/python2.6
py2.6-linux-x86_64-ucs2 = straub.bx.psu.edu /afs/bx.psu.edu/project/pythons/py2.6-linux-x86_64-ucs2/bin/python2.6
py2.6-linux-x86_64-ucs4 = straub.bx.psu.edu /afs/bx.psu.edu/project/pythons/py2.6-linux-x86_64-ucs4/bin/python2.6
py2.7-linux-i686-ucs2 = stegmaier.bx.psu.edu /afs/bx.psu.edu/project/pythons/py2.7-linux-i686-ucs2/bin/python2.7
py2.7-linux-i686-ucs4 = stegmaier.bx.psu.edu /afs/bx.psu.edu/project/pythons/py2.7-linux-i686-ucs4/bin/python2.7
py2.7-linux-x86_64-ucs2 = straub.bx.psu.edu /afs/bx.psu.edu/project/pythons/py2.7-linux-x86_64-ucs2/bin/python2.7
py2.7-linux-x86_64-ucs4 = straub.bx.psu.edu /afs/bx.psu.edu/project/pythons/py2.7-linux-x86_64-ucs4/bin/python2.7
py2.6-macosx-10.6-intel-ucs2 = lion.bx.psu.edu /usr/local/bin/python2.6
py2.7-macosx-10.6-intel-ucs2 = lion.bx.psu.edu /usr/local/bin/python2.7
;
; these hosts are used to build eggs with no C extensions
py2.6 = straub.bx.psu.edu /afs/bx.psu.edu/project/pythons/linux-x86_64-ucs4/bin/python2.6
py2.7 = straub.bx.psu.edu /afs/bx.psu.edu/project/pythons/linux-x86_64-ucs4/bin/python2.7
py2.6 = straub.bx.psu.edu /afs/bx.psu.edu/project/pythons/py2.6-linux-x86_64-ucs4/bin/python2.6
py2.7 = straub.bx.psu.edu /afs/bx.psu.edu/project/pythons/py2.7-linux-x86_64-ucs4/bin/python2.7
[groups]
py2.6-linux-i686 = py2.6-linux-i686-ucs2 py2.6-linux-i686-ucs4
@@ -35,8 +33,8 @@ py2.7-linux = py2.7-linux-i686 py2.7-linux-x86_64
linux-i686 = py2.6-linux-i686 py2.7-linux-i686
linux-x86_64 = py2.6-linux-x86_64 py2.7-linux-x86_64
linux = linux-i686 linux-x86_64
py2.6-macosx = py2.6-macosx-10.3-fat-ucs2 py2.6-macosx-10.6-universal-ucs2
py2.7-macosx = py2.7-macosx-10.3-fat-ucs2 py2.7-macosx-10.6-intel-ucs2
py2.6-macosx = py2.6-macosx-10.6-intel-ucs2
py2.7-macosx = py2.7-macosx-10.6-intel-ucs2
macosx = py2.6-macosx py2.7-macosx
py2.6-all = py2.6-linux py2.6-macosx
py2.7-all = py2.7-linux py2.7-macosx
doc/source/lib/galaxy.webapps.galaxy.api.rst~
-179
View File
@@ -1,179 +0,0 @@
api Package
===========
:mod:`datasets` Module
----------------------
.. automodule:: galaxy.webapps.galaxy.api.datasets
:members:
:undoc-members:
:show-inheritance:
:mod:`folder_contents` Module
-----------------------------
.. automodule:: galaxy.webapps.galaxy.api.folder_contents
:members:
:undoc-members:
:show-inheritance:
:mod:`folders` Module
---------------------
.. automodule:: galaxy.webapps.galaxy.api.folders
:members:
:undoc-members:
:show-inheritance:
:mod:`forms` Module
-------------------
.. automodule:: galaxy.webapps.galaxy.api.forms
:members:
:undoc-members:
:show-inheritance:
:mod:`genomes` Module
---------------------
.. automodule:: galaxy.webapps.galaxy.api.genomes
:members:
:undoc-members:
:show-inheritance:
:mod:`group_roles` Module
-------------------------
.. automodule:: galaxy.webapps.galaxy.api.group_roles
:members:
:undoc-members:
:show-inheritance:
:mod:`group_users` Module
-------------------------
.. automodule:: galaxy.webapps.galaxy.api.group_users
:members:
:undoc-members:
:show-inheritance:
:mod:`groups` Module
--------------------
.. automodule:: galaxy.webapps.galaxy.api.groups
:members:
:undoc-members:
:show-inheritance:
:mod:`histories` Module
-----------------------
.. automodule:: galaxy.webapps.galaxy.api.histories
:members:
:undoc-members:
:show-inheritance:
:mod:`history_contents` Module
------------------------------
.. automodule:: galaxy.webapps.galaxy.api.history_contents
:members:
:undoc-members:
:show-inheritance:
:mod:`libraries` Module
-----------------------
.. automodule:: galaxy.webapps.galaxy.api.libraries
:members:
:undoc-members:
:show-inheritance:
:mod:`library_contents` Module
------------------------------
.. automodule:: galaxy.webapps.galaxy.api.library_contents
:members:
:undoc-members:
:show-inheritance:
:mod:`permissions` Module
-------------------------
.. automodule:: galaxy.webapps.galaxy.api.permissions
:members:
:undoc-members:
:show-inheritance:
:mod:`quotas` Module
--------------------
.. automodule:: galaxy.webapps.galaxy.api.quotas
:members:
:undoc-members:
:show-inheritance:
:mod:`request_types` Module
---------------------------
.. automodule:: galaxy.webapps.galaxy.api.request_types
:members:
:undoc-members:
:show-inheritance:
:mod:`requests` Module
----------------------
.. automodule:: galaxy.webapps.galaxy.api.requests
:members:
:undoc-members:
:show-inheritance:
:mod:`roles` Module
-------------------
.. automodule:: galaxy.webapps.galaxy.api.roles
:members:
:undoc-members:
:show-inheritance:
:mod:`samples` Module
---------------------
.. automodule:: galaxy.webapps.galaxy.api.samples
:members:
:undoc-members:
:show-inheritance:
:mod:`tools` Module
-------------------
.. automodule:: galaxy.webapps.galaxy.api.tools
:members:
:undoc-members:
:show-inheritance:
:mod:`users` Module
-------------------
.. automodule:: galaxy.webapps.galaxy.api.users
:members:
:undoc-members:
:show-inheritance:
:mod:`visualizations` Module
----------------------------
.. automodule:: galaxy.webapps.galaxy.api.visualizations
:members:
:undoc-members:
:show-inheritance:
:mod:`workflows` Module
-----------------------
.. automodule:: galaxy.webapps.galaxy.api.workflows
:members:
:undoc-members:
:show-inheritance:
eggs.ini
+6 -3
View File
@@ -3,7 +3,7 @@
;
; This file is version controlled and should not be edited by hand!
; For more information, see:
; http://wiki.g2.bx.psu.edu/Admin/Config/Eggs
; https://wiki.galaxyproject.org/Admin/Config/Eggs
;
[general]
@@ -12,7 +12,7 @@ repository = http://eggs.galaxyproject.org
no_auto = pbs_python
[eggs:platform]
bx_python = 0.7.1
bx_python = 0.7.2
Cheetah = 2.2.2
MarkupSafe = 0.12
mercurial = 2.2.3
@@ -35,6 +35,7 @@ SQLAlchemy = 0.7.9
amqp = 1.4.3
anyjson = 0.3.3
Beaker = 1.4
bioblend = 0.4.2
boto = 2.27.0
decorator = 3.1.2
docutils = 0.7
@@ -45,6 +46,7 @@ GeneTrack = 2.0.0_beta_1
kombu = 3.0.12
lrucache = 0.2
Mako = 0.4.1
mock = 1.0.1
nose = 0.11.1
NoseHTML = 0.4.1
NoseTestDiff = 0.1
@@ -53,11 +55,13 @@ Parsley = 1.1
Paste = 1.7.5.1
PasteDeploy = 1.5.0
pexpect = 2.4
poster = 0.8.1
python_openid = 2.2.5
python_daemon = 1.5.5
pytz = 2013.9
requests = 2.2.1
Routes = 1.12.3
simplejson = 2.1.1
sqlalchemy_migrate = 0.7.2
ssh = 1.7.14
SVGFig = 1.1.6
@@ -78,7 +82,6 @@ raven = 3.1.8
psycopg2 = _9.2.4_static
pysqlite = _3.6.17_static
MySQL_python = _5.1.41_static
bx_python = _7b95ff194725
GeneTrack = _dev_48da9e998f0caf01c5be731e926f4b0481f658f0
pysam = _kanwei_b10f6e722e9a
job_conf.xml.sample_advanced
+110 -17
View File
@@ -23,11 +23,40 @@
<!-- More information on LWR can be found at https://lwr.readthedocs.org -->
<!-- Uncomment following line to use libcurl to perform HTTP calls (defaults to urllib) -->
<!-- <param id="transport">curl</param> -->
<!-- Uncomment following parameters (second optional) to target a message
queue, ensure jobs_directory is specified on destinations and all
file actions are remote executable. -->
<!-- <param id="url">amqp://guest:guest@localhost:5672//</param> -->
<!-- *Experimental Caching*: Uncomment next parameters to enable
caching and specify the number of caching threads to enable on Galaxy
side. Likely will not work with newer features such as MQ support.
If this is enabled be sure to specify a `file_cache_dir` in the remote
LWR's main configuration file.
-->
<!-- <param id="cache">True</param> -->
<!-- <param id="transfer_threads">2</param> -->
</plugin>
<plugin id="amqp_lwr" type="runner" load="galaxy.jobs.runners.lwr:LwrJobRunner">
<param id="url">amqp://guest:guest@localhost:5672//</param>
<!-- If using message queue driven LWR - the LWR will generally
initiate file transfers so a the URL of this Galaxy instance
must be configured. -->
<param id="galaxy_url">http://localhost:8080/</param>
<!-- If multiple managers configured on the LWR, specify which one
this plugin targets. -->
<!-- <param id="manager">_default_</param> -->
<!-- The AMQP client can provide an SSL client certificate (e.g. for
validation), the following options configure that certificate
(see for reference:
http://kombu.readthedocs.org/en/latest/reference/kombu.connection.html
). If you simply want to use SSL but not use/validate a client
cert, just use the ?ssl=1 query on the amqp URL instead. -->
<!-- <param id="amqp_connect_ssl_ca_certs">/path/to/cacert.pem</param> -->
<!-- <param id="amqp_connect_ssl_keyfile">/path/to/key.pem</param> -->
<!-- <param id="amqp_connect_ssl_certfile">/path/to/cert.pem</param> -->
<!-- <param id="amqp_connect_ssl_cert_reqs">cert_required</param> -->
<!-- By default, the AMQP consumer uses a nonblocking connection with
a 0.2 second timeout. In testing, this works fine for
unencrypted AMQP connections, but with SSL it will cause the
client to reconnect to the server after each timeout. Set to a
higher value (in seconds) (or `None` to use blocking connections). -->
<!-- <param id="amqp_consumer_timeout">None</param> -->
</plugin>
<plugin id="cli" type="runner" load="galaxy.jobs.runners.cli:ShellJobRunner" />
<plugin id="condor" type="runner" load="galaxy.jobs.runners.condor:CondorJobRunner" />
@@ -62,6 +91,11 @@
<!-- Warning: Local slot count doesn't tie up additional worker threads, to prevent over
allocating machine define a second local runner with different name and fewer workers
to run this destination. -->
<job_metrics />
<!-- Above element demonstrates embedded job metrics definition - see
job_metrics_conf.xml.sample for full documentation on possible nested
elements. This empty block will simply disable job metrics for the
corresponding destination. -->
</destination>
<destination id="pbs" runner="pbs" tags="mycluster"/>
<destination id="pbs_longjobs" runner="pbs" tags="mycluster,longjobs">
@@ -69,6 +103,23 @@
<param id="Resource_List">walltime=72:00:00</param>
</destination>
<destination id="remote_cluster" runner="drmaa" tags="longjobs"/>
<destination id="java_cluster" runner="drmaa">
<!-- set arbitrary environment variables at runtime - like metrics
doesn't yet work with local or CLI runners. But should work with
DRMAA/SLURM, PBS, Condor, and LWR. General dependencies for tools
should be configured via tool_dependency_dir and package options
and these options should be reserved for defining cluster specific
options.
-->
<env id="_JAVA_OPTIONS">-Xmx=6GB</env>
<env id="ANOTHER_OPTION" raw="true">'5'</env> <!-- raw disables auto quoting -->
<env file="/mnt/java_cluster/environment_setup.sh" /> <!-- will be sourced -->
<env exec="module load javastuff/2.10" /> <!-- will be sourced -->
<!-- files to source and exec statements will be handled on remote
clusters. These don't need to be available on the Galaxy server
itself.
-->
</destination>
<destination id="real_user_cluster" runner="drmaa">
<!-- TODO: The real user options should maybe not be considered runner params. -->
<param id="galaxy_external_runjob_script">scripts/drmaa_external_runner.py</param>
@@ -86,7 +137,11 @@
<!-- Uncomment the following statement to disable file staging (e.g.
if there is a shared file system between Galaxy and the LWR
server). Alternatively action can be set to 'copy' - to replace
http transfers with file system copies. -->
http transfers with file system copies, 'remote_transfer' to cause
the lwr to initiate HTTP transfers instead of Galaxy, or
'remote_copy' to cause lwr to initiate file system copies.
If setting this to 'remote_transfer' be sure to specify a
'galaxy_url' attribute on the runner plugin above. -->
<!-- <param id="default_file_action">none</param> -->
<!-- The above option is just the default, the transfer behavior
none|copy|http can be configured on a per path basis via the
@@ -98,24 +153,29 @@
<!-- Uncomment following option to disable Galaxy tool dependency
resolution and utilize remote LWR's configuraiton of tool
dependency resolution instead (same options as Galaxy for
dependency resolution are available in LWR).
dependency resolution are available in LWR). At a minimum
the remote LWR server should define a tool_dependencies_dir in
its `server.ini` configuration. The LWR will not attempt to
stage dependencies - so ensure the the required galaxy or tool
shed packages are available remotely (exact same tool shed
installed changesets are required).
-->
<!-- <param id="dependency_resolution">remote</params> -->
<!-- Traditionally, the LWR allow Galaxy to generate a command line
as if it were going to run the command locally and then the
LWR client rewrites it after the fact using regular
expressions. Setting the following value to true causes the
LWR runner to insert itself into the command line generation
process and generate the correct command line from the get go.
This will likely be the default someday - but requires a newer
LWR version and is less well tested. -->
<!-- <param id="rewrite_parameters">true</params> -->
<!-- Uncomment following option to enable setting metadata on remote
LWR server. The 'use_remote_datatypes' option is available for
determining whether to use remotely configured datatypes or local
ones (both alternatives are a little brittle). -->
<!-- <param id="remote_metadata">true</param> -->
<!-- <param id="use_remote_datatypes">false</param> -->
<!-- Traditionally, the LWR client sends request to LWR
server to populate various system properties. This
extra step can be disabled and these calculated here
on client by uncommenting job_directory and
specifying any additional remote_property_ of
interest. When using message queues this is nessecary
not optional.
-->
<!-- <param id="jobs_directory">/path/to/remote/lwr/lwr_staging/</param> -->
<!-- <param id="remote_property_galaxy_home">/path/to/remote/galaxy-central</param> -->
<!-- If remote LWR server is configured to run jobs as the real user,
uncomment the following line to pass the current Galaxy user
@@ -127,6 +187,27 @@
-->
<!-- <param id="submit_native_specification">-P bignodes -R y -pe threads 8</param> -->
</destination>
<destination id="amqp_lwr_dest" runner="amqp_lwr" >
<!-- url and private_token are not valid when using MQ driven LWR. The plugin above
determines which queue/manager to target and the underlying MQ server should be
used to configure security.
-->
<!-- Traditionally, the LWR client sends request to LWR
server to populate various system properties. This
extra step can be disabled and these calculated here
on client by uncommenting jobs_directory and
specifying any additional remote_property_ of
interest, this is not optional when using message
queues.
-->
<param id="jobs_directory">/path/to/remote/lwr/lwr_staging/</param>
<!-- Default the LWR send files to and pull files from Galaxy when
using message queues (in the more traditional mode Galaxy sends
files to and pull files from the LWR - this is obviously less
appropriate when using a message queue).
-->
<param id="default_file_action">remote_transfer</param>
</destination>
<destination id="ssh_torque" runner="cli">
<param id="shell_plugin">SecureShell</param>
<param id="job_plugin">Torque</param>
@@ -134,6 +215,18 @@
<param id="shell_hostname">foo.example.org</param>
<param id="job_Resource_List">walltime=24:00:00,ncpus=4</param>
</destination>
<!-- Example CLI Slurm runner. -->
<destination id="ssh_slurm" runner="cli">
<param id="shell_plugin">SecureShell</param>
<param id="job_plugin">Slurm</param>
<param id="shell_username">foo</param>
<param id="shell_hostname">my_host</param>
<param id="job_time">2:00:00</param>
<param id="job_ncpus">4</param>
<param id="job_partition">my_partition</param>
</destination>
<destination id="condor" runner="condor">
<!-- With no params, jobs are submitted to the 'vanilla' universe with:
notification = NEVER
@@ -159,8 +252,8 @@
<limits>
<!-- Certain limits can be defined. -->
<limit type="registered_user_concurrent_jobs">2</limit>
<limit type="unregistered_user_concurrent_jobs">1</limit>
<limit type="job_walltime">24:00:00</limit>
<limit type="anonymous_user_concurrent_jobs">1</limit>
<limit type="walltime">24:00:00</limit>
<limit type="concurrent_jobs" id="local">1</limit>
<limit type="concurrent_jobs" tag="mycluster">2</limit>
<limit type="concurrent_jobs" tag="longjobs">1</limit>

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