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output_checker: fix superficial condition (#7980)

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output_checker: fix superficial condition
This commit is contained in:
Nicola Soranzo
2019-05-19 17:25:18 +01:00
committed by GitHub
parent b8f9d9a75c 12b409e2f8
commit 8a76eee7cf
1 changed files with 2 additions and 5 deletions
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lib/galaxy/jobs/output_checker.py
+2 -5
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@@ -146,11 +146,8 @@ def check_output(stdio_regexes, stdio_exit_codes, stdout, stderr, tool_exit_code
if stderr:
state = DETECTED_JOB_STATE.GENERIC_ERROR
if state != DETECTED_JOB_STATE.OK and stderr:
if stderr:
peak = stderr[0:ERROR_PEAK]
else:
peak = ""
if state != DETECTED_JOB_STATE.OK:
peak = stderr[0:ERROR_PEAK] if stderr else ""
log.debug("job failed, detected state %s, standard error is - [%s]" % (state, peak))
except Exception:
log.exception("Job state check encountered unexpected exception; assuming execution successful")