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Update Python dependencies

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galaxybot
2022-05-28 03:30:11 +00:00
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parent f7f9817a77
commit 8874052034
3 changed files with 38 additions and 38 deletions
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lib/galaxy/dependencies/dev-requirements.txt
+19 -19
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@@ -29,7 +29,7 @@ bleach==5.0.0; python_version >= "3.7"
boltons==21.0.0
boto==2.49.0
bx-python==0.8.13; python_version >= "3.7"
cachecontrol==0.12.11; python_version >= "3.7" and python_version < "4"
cachecontrol==0.12.11; python_version >= "3.6" and python_version < "4"
cached-property==1.5.2; python_version < "3.8" and python_version >= "3.7"
celery==5.2.6; python_version >= "3.7"
certifi==2022.5.18.1; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.6.0" and python_version < "4" and python_version >= "3.7"
@@ -46,7 +46,7 @@ cloudbridge==3.0.0
colorama==0.4.4; sys_platform == "win32" and python_version >= "3.7" and python_full_version >= "3.6.2" and platform_system == "Windows" and (python_version >= "2.7" and python_full_version < "3.0.0" and platform_system == "Windows" or python_full_version >= "3.5.0" and platform_system == "Windows") and (python_version >= "3.7" and python_full_version < "3.0.0" and sys_platform == "win32" or sys_platform == "win32" and python_version >= "3.7" and python_full_version >= "3.5.0") and (python_version >= "3.6" and python_full_version < "3.0.0" and sys_platform == "win32" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6") or sys_platform == "win32" and python_version >= "3.6" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6") and python_full_version >= "3.5.0")
coloredlogs==15.0.1; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0"
commonmark==0.9.1; python_full_version >= "3.6.3" and python_full_version < "4.0.0"
coverage==6.3.3; python_version >= "3.7"
coverage==6.4; python_version >= "3.7"
cryptography==37.0.2; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.6.0" and python_version < "4" and python_version >= "3.7"
cwltest==2.2.20210901154959; python_version >= "3.6" and python_version < "4"
cwltool==3.1.20211107152837; python_version >= "3.6" and python_version < "4"
@@ -75,13 +75,13 @@ greenlet==1.1.2; python_version >= "3" and python_full_version < "3.0.0" and (pl
gunicorn==20.1.0; python_version >= "3.5"
gxformat2==0.15.0
h11==0.12.0; python_version >= "3.7" and python_version < "4.0" and python_full_version >= "3.7.0"
h5py==3.6.0; python_version >= "3.7"
httpcore==0.14.7; python_version >= "3.6"
httpx==0.22.0; python_version >= "3.6"
h5py==3.7.0; python_version >= "3.7"
httpcore==0.15.0; python_version >= "3.7"
httpx==0.23.0; python_version >= "3.7"
humanfriendly==10.0; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0"
idna==3.3
imagesize==1.3.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
importlib-metadata==4.11.3; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7") and python_full_version >= "3.6.2" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6")
importlib-metadata==4.11.4; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7") and python_full_version >= "3.6.2" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6")
importlib-resources==5.7.1; python_version >= "3.7"
iniconfig==1.1.1; python_version >= "3.7"
isa-rwval==0.10.10
@@ -93,8 +93,8 @@ jsonschema==4.5.1; python_version >= "3.7"
junit-xml==1.9; python_version >= "3.6" and python_version < "4"
kiwisolver==1.4.2; python_version >= "3.7"
kombu==5.2.4; python_version >= "3.7"
lagom==1.7.0; python_version >= "3.6" and python_version < "4.0"
lockfile==0.12.2; python_version >= "3.7" and python_version < "4"
lagom==1.7.1; python_version >= "3.6" and python_version < "4.0"
lockfile==0.12.2; python_version >= "3.6" and python_version < "4"
lxml==4.8.0; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
mako==1.2.0; python_version >= "3.7"
markdown-it-reporter==0.0.2
@@ -103,9 +103,9 @@ markupsafe==2.1.1; python_version >= "3.7"
matplotlib==3.5.2; python_version >= "3.7"
mercurial==6.1.2
mirakuru==2.4.2; python_version >= "3.7"
mistune==0.8.4; python_version >= "3.7" and python_version < "4"
mistune==0.8.4; python_version >= "3.6" and python_version < "4"
mrcfile==1.3.0
msgpack==1.0.3; python_version >= "3.7" and python_version < "4"
msgpack==1.0.3; python_version >= "3.6" and python_version < "4"
mypy-extensions==0.4.3; python_version >= "3.7" and python_version < "4" and python_full_version >= "3.6.2"
networkx==2.5; python_version >= "3.6" and python_version < "4"
nodeenv==1.6.0
@@ -150,7 +150,7 @@ pyparsing==3.0.9; python_full_version >= "3.6.8"
pyreadline3==3.4.1; sys_platform == "win32" and python_version >= "3.8" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0")
pyreadline==2.1; sys_platform == "win32" and python_version < "3.8" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0")
pyrsistent==0.18.1; python_version >= "3.7"
pysam==0.19.0
pysam==0.19.1
pysocks==1.7.1; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.6.0" and python_version < "4" and python_version >= "3.7"
pytest-asyncio==0.18.3; python_version >= "3.7"
pytest-celery==0.0.0
@@ -165,7 +165,7 @@ pytest==7.1.2; python_version >= "3.7"
python-dateutil==2.8.2; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.3.0")
python-irodsclient==1.1.3
python-jose==3.3.0
python-magic==0.4.25; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
python-magic==0.4.26; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
python-multipart==0.0.5
python3-openid==3.2.0; python_version >= "3.0"
pytz==2022.1; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7"
@@ -178,16 +178,16 @@ repoze.lru==0.7
requests-oauthlib==1.3.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
requests-toolbelt==0.9.1; python_version >= "3.7"
requests==2.27.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.6.0")
responses==0.20.0; python_version >= "3.7"
rfc3986==1.5.0; python_version >= "3.6"
rich==12.4.1; python_full_version >= "3.6.3" and python_full_version < "4.0.0"
responses==0.21.0; python_version >= "3.7"
rfc3986==1.5.0; python_version >= "3.7"
rich==12.4.4; python_full_version >= "3.6.3" and python_full_version < "4.0.0"
routes==2.5.1
rsa==4.8; python_version >= "3.6" and python_version < "4"
ruamel.yaml.clib==0.2.6; platform_python_implementation == "CPython" and python_version < "3.10" and python_version >= "3.6"
ruamel.yaml==0.17.17; python_version >= "3.7" and python_version < "4"
schema-salad==8.3.20220518163624; python_version >= "3.7" and python_version < "4"
ruamel.yaml==0.17.17; python_version >= "3.6" and python_version < "4"
schema-salad==8.3.20220525163636; python_version >= "3.6" and python_version < "4"
scipy==1.7.3; python_version >= "3.7" and python_version < "3.11"
selenium==4.1.5; python_version >= "3.7" and python_version < "4.0"
selenium==4.2.0; python_version >= "3.7" and python_version < "4.0"
setuptools-scm==5.0.2; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7"
shellescape==3.8.1; python_version >= "3.6" and python_version < "4"
six==1.16.0; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.3.0" and python_version >= "3.7" and python_version < "4"
@@ -227,7 +227,7 @@ trio==0.20.0; python_version >= "3.7" and python_version < "4.0"
tuspy==0.2.5
tuswsgi==0.5.4
twill==3.0.2
typed-ast==1.5.3; python_version < "3.8" and implementation_name == "cpython" and python_full_version >= "3.6.2" and python_version >= "3.7"
typed-ast==1.5.4; python_version < "3.8" and implementation_name == "cpython" and python_full_version >= "3.6.2" and python_version >= "3.7"
typing-extensions==4.2.0; python_version >= "3.7"
tzlocal==2.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"
ubiquerg==0.6.2
lib/galaxy/dependencies/pinned-lint-requirements.txt
+7 -7
View File
@@ -3,25 +3,25 @@ flake8==4.0.1
flake8-bugbear==22.4.25
importlib-metadata==4.2.0
mccabe==0.6.1
mypy==0.950
mypy==0.960
mypy-extensions==0.4.3
pycodestyle==2.8.0
pyflakes==2.4.0
tomli==2.0.1
typed-ast==1.5.3
typed-ast==1.5.4
types-bleach==5.0.2
types-boto==2.49.15
types-contextvars==2.4.5
types-contextvars==2.4.6
types-cryptography==3.3.21
types-dataclasses==0.6.5
types-docutils==0.18.3
types-Markdown==3.3.21
types-Markdown==3.3.23
types-paramiko==2.10.0
types-pkg-resources==0.1.3
types-python-dateutil==2.8.16
types-python-dateutil==2.8.17
types-PyYAML==6.0.7
types-requests==2.27.27
types-requests==2.27.29
types-six==1.16.15
types-urllib3==1.26.14
types-urllib3==1.26.15
typing_extensions==4.2.0
zipp==3.8.0
lib/galaxy/dependencies/pinned-requirements.txt
+12 -12
View File
@@ -24,7 +24,7 @@ bleach==5.0.0; python_version >= "3.7"
boltons==21.0.0
boto==2.49.0
bx-python==0.8.13; python_version >= "3.7"
cachecontrol==0.12.11; python_version >= "3.7" and python_version < "4"
cachecontrol==0.12.11; python_version >= "3.6" and python_version < "4"
cached-property==1.5.2; python_version < "3.8" and python_version >= "3.7"
celery==5.2.6; python_version >= "3.7"
certifi==2022.5.18.1; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.6.0" and python_version < "4" and python_version >= "3.7"
@@ -63,26 +63,26 @@ greenlet==1.1.2; python_version >= "3" and python_full_version < "3.0.0" and (pl
gunicorn==20.1.0; python_version >= "3.5"
gxformat2==0.15.0
h11==0.12.0; python_version >= "3.7"
h5py==3.6.0; python_version >= "3.7"
h5py==3.7.0; python_version >= "3.7"
humanfriendly==10.0; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0"
idna==3.3; python_full_version >= "3.6.2" and python_version >= "3.7" and python_version < "4"
importlib-metadata==4.11.3; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7")
importlib-metadata==4.11.4; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7")
importlib-resources==5.7.1; python_version >= "3.7"
isa-rwval==0.10.10
isodate==0.6.1; python_version >= "3.7" and python_version < "4"
jsonref==0.2; python_version >= "3.6"
jsonschema==4.5.1; python_version >= "3.7"
kombu==5.2.4; python_version >= "3.7"
lagom==1.7.0; python_version >= "3.6" and python_version < "4.0"
lockfile==0.12.2; python_version >= "3.7" and python_version < "4"
lagom==1.7.1; python_version >= "3.6" and python_version < "4.0"
lockfile==0.12.2; python_version >= "3.6" and python_version < "4"
lxml==4.8.0; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
mako==1.2.0; python_version >= "3.7"
markdown==3.3.7; python_version >= "3.6"
markupsafe==2.1.1; python_version >= "3.7"
mercurial==6.1.2
mistune==0.8.4; python_version >= "3.7" and python_version < "4"
mistune==0.8.4; python_version >= "3.6" and python_version < "4"
mrcfile==1.3.0
msgpack==1.0.3; python_version >= "3.7" and python_version < "4"
msgpack==1.0.3; python_version >= "3.6" and python_version < "4"
mypy-extensions==0.4.3; python_version >= "3.6" and python_version < "4"
networkx==2.5; python_version >= "3.6" and python_version < "4"
nodeenv==1.6.0
@@ -117,10 +117,10 @@ pyparsing==3.0.9; python_full_version >= "3.6.8"
pyreadline3==3.4.1; sys_platform == "win32" and python_version >= "3.8" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0")
pyreadline==2.1; sys_platform == "win32" and python_version < "3.8" and (python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0")
pyrsistent==0.18.1; python_version >= "3.7"
pysam==0.19.0
pysam==0.19.1
python-dateutil==2.8.2; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.3.0")
python-jose==3.3.0
python-magic==0.4.25; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
python-magic==0.4.26; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.5.0")
python-multipart==0.0.5
python3-openid==3.2.0; python_version >= "3.0"
pytz==2022.1; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7"
@@ -132,12 +132,12 @@ repoze.lru==0.7
requests-oauthlib==1.3.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0"
requests-toolbelt==0.9.1; python_version >= "3.7"
requests==2.27.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.6.0")
rich==12.4.1; python_full_version >= "3.6.3" and python_full_version < "4.0.0"
rich==12.4.4; python_full_version >= "3.6.3" and python_full_version < "4.0.0"
routes==2.5.1
rsa==4.8; python_version >= "3.6" and python_version < "4"
ruamel.yaml.clib==0.2.6; platform_python_implementation == "CPython" and python_version < "3.10" and python_version >= "3.6"
ruamel.yaml==0.17.17; python_version >= "3.7" and python_version < "4"
schema-salad==8.3.20220518163624; python_version >= "3.7" and python_version < "4"
ruamel.yaml==0.17.17; python_version >= "3.6" and python_version < "4"
schema-salad==8.3.20220525163636; python_version >= "3.6" and python_version < "4"
setuptools-scm==5.0.2; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"
shellescape==3.8.1; python_version >= "3.6" and python_version < "4"
six==1.16.0; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.3.0" and python_version >= "3.7" and python_version < "4"