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Adding more features like colors, collapse, prune and resize of the tree

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This commit is contained in:
anuprulez
2017-03-28 17:18:04 +02:00
parent 2839153eb4
commit 876c7a2d3d
7 changed files with 202 additions and 67 deletions
Download Patch File Download Diff File Expand all files Collapse all files
config/plugins/visualizations/charts/static/repository/build/biojs_phylocanvas.js
+32 -3
View File
@@ -55,16 +55,45 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
url : dataset.download_url,
success : function( content ) {
try {
var tree = Phylocanvas.default.createTree( options.targets[ 0 ] );
console.log(tree);
var tree = Phylocanvas.default.createTree( options.targets[ 0 ] ),
node_size = 20,
text_size = 20,
line_width = 2;
// Set different properties of the tree
tree.setTreeType( settings.get( 'tree_type' ) );
tree.branchColour = settings.get( 'edge_color' );
tree.showLabels = settings.get( 'show_label' ) === "true" ? true : false;
tree.showLabels = settings.get( 'show_labels' ) === "true" ? true : false;
tree.alignLabels = settings.get( 'align_labels' ) === "true" ? true : false;
tree.highlightColour = settings.get( 'highlighted_color' );
tree.selectedColour = settings.get( 'selected_color' );
tree.setNodeSize( node_size );
tree.setTextSize( text_size );
tree.lineWidth = line_width;
// Register click event on tree
tree.on('click', function (e) {
var node = tree.getNodeAtMousePosition( e );
// Here collapse action is taking preference.
// Whenver collapse and prune both are selected true,
// collapse action will be performed
// Collapse the selected branch
if( settings.get( 'collapse_branch' ) === "true" ) {
tree.branches[ node.id ].collapsed = true;
tree.draw();
}// Prune the selected branch
else if( settings.get( 'prune_branch' ) === "true" ) {
tree.branches[ node.id ].pruned = true;
tree.draw();
}
});
// Draw the phylogenetic tree
tree.load( content );
chart.state( 'ok', 'Done.' );
options.process.resolve();
// Adjust the size of tree on window resize
$( window ).resize( function() {
tree.fitInPanel( tree.leaves ); tree.draw();
} );
} catch( err ) {
chart.state( 'failed', err );
}
config/plugins/visualizations/charts/static/repository/build/biojs_phylocanvas.js.map
+1 -1
View File
File diff suppressed because one or more lines are too long
config/plugins/visualizations/charts/static/repository/build/registry.js
+96 -57
View File
@@ -44,13 +44,15 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
/* 0 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() { return {nvd3_bar:__webpack_require__( 1 ), nvd3_bar_horizontal:__webpack_require__( 4 ), nvd3_bar_horizontal_stacked:__webpack_require__( 5 ), nvd3_bar_stacked:__webpack_require__( 6 ), nvd3_line:__webpack_require__( 7 ), nvd3_line_focus:__webpack_require__( 8 ), nvd3_scatter:__webpack_require__( 9 ), nvd3_stackedarea:__webpack_require__( 10 ), nvd3_stackedarea_full:__webpack_require__( 11 ), nvd3_stackedarea_stream:__webpack_require__( 12 ), nvd3_pie:__webpack_require__( 13 ), nvd3_histogram:__webpack_require__( 14 ), nvd3_histogram_discrete:__webpack_require__( 15 ), jqplot_bar:__webpack_require__( 16 ), jqplot_boxplot:__webpack_require__( 18 ), jqplot_histogram_discrete:__webpack_require__( 19 ), jqplot_line:__webpack_require__( 20 ), jqplot_scatter:__webpack_require__( 21 ), biojs_msa:__webpack_require__( 22 ), biojs_drawrnajs:__webpack_require__( 23 ), biojs_phylocanvas:__webpack_require__( 24 ), others_example:__webpack_require__( 25 ), others_heatmap:__webpack_require__( 26 ), others_heatmap_cluster:__webpack_require__( 27 ), cytoscape_basic:__webpack_require__( 28 ), pv_viewer:__webpack_require__( 29 ), benfred_venn:__webpack_require__( 30 ), ngl_viewer:__webpack_require__( 31 ),} }.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() { return {nvd3_bar:__webpack_require__( 3 ), nvd3_bar_horizontal:__webpack_require__( 6 ), nvd3_bar_horizontal_stacked:__webpack_require__( 7 ), nvd3_bar_stacked:__webpack_require__( 8 ), nvd3_line:__webpack_require__( 9 ), nvd3_line_focus:__webpack_require__( 10 ), nvd3_scatter:__webpack_require__( 11 ), nvd3_stackedarea:__webpack_require__( 12 ), nvd3_stackedarea_full:__webpack_require__( 13 ), nvd3_stackedarea_stream:__webpack_require__( 14 ), nvd3_pie:__webpack_require__( 15 ), nvd3_histogram:__webpack_require__( 16 ), nvd3_histogram_discrete:__webpack_require__( 17 ), jqplot_bar:__webpack_require__( 18 ), jqplot_boxplot:__webpack_require__( 20 ), jqplot_histogram_discrete:__webpack_require__( 21 ), jqplot_line:__webpack_require__( 22 ), jqplot_scatter:__webpack_require__( 23 ), biojs_msa:__webpack_require__( 24 ), biojs_drawrnajs:__webpack_require__( 25 ), biojs_phylocanvas:__webpack_require__( 26 ), others_example:__webpack_require__( 27 ), others_heatmap:__webpack_require__( 28 ), others_heatmap_cluster:__webpack_require__( 29 ), cytoscape_basic:__webpack_require__( 30 ), pv_viewer:__webpack_require__( 31 ), benfred_venn:__webpack_require__( 32 ), ngl_viewer:__webpack_require__( 33 ),} }.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 1 */
/* 1 */,
/* 2 */,
/* 3 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(2) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend(true, {}, nvd3_config, {
title : 'Bar diagram',
description : 'Renders a regular bar diagram using NVD3 hosted at http://www.nvd3.org.',
@@ -71,10 +73,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 2 */
/* 4 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(3) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : '',
library : 'NVD3',
@@ -97,7 +99,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 3 */
/* 5 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -181,10 +183,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 4 */
/* 6 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(2) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Horizontal',
description : 'Renders a horizontal bar diagram using NVD3 hosted at http://www.nvd3.org.',
@@ -205,10 +207,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 5 */
/* 7 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(2) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Stacked horizontal',
description : 'Renders a stacked horizontal bar diagram using NVD3 hosted at http://www.nvd3.org.',
@@ -230,10 +232,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 6 */
/* 8 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(2) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Stacked',
description : 'Renders a stacked bar diagram using NVD3 hosted at http://www.nvd3.org.',
@@ -255,10 +257,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 7 */
/* 9 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(2) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Line chart',
description : 'Renders a line chart using NVD3 hosted at http://www.nvd3.org.',
@@ -280,10 +282,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 8 */
/* 10 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(2) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Line with focus',
description : 'Renders a line chart with focus panel using NVD3 hosted at http://www.nvd3.org.',
@@ -305,10 +307,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 9 */
/* 11 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(2) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Scatter plot',
description : 'Renders a scatter plot using NVD3 hosted at http://www.nvd3.org.',
@@ -329,10 +331,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 10 */
/* 12 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(2) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Stacked area',
zoomable : true,
@@ -355,10 +357,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 11 */
/* 13 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(2) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend( true, {}, nvd3_config, {
title : 'Expanded',
zoomable : true,
@@ -381,10 +383,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 12 */
/* 14 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(2) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(4) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( nvd3_config ) {
return $.extend(true, {}, nvd3_config, {
title : 'Stream',
description : 'Renders a stream chart using NVD3 hosted at http://www.nvd3.org.',
@@ -408,10 +410,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 13 */
/* 15 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(3) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : 'Pie chart',
description : 'Renders a pie chart using NVD3 hosted at http://www.nvd3.org.',
@@ -486,10 +488,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 14 */
/* 16 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(3) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
library : 'NVD3',
tag : 'svg',
@@ -518,10 +520,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 15 */
/* 17 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(3) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend(true, {}, default_config, {
library : 'NVD3',
tag : 'svg',
@@ -540,10 +542,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 16 */
/* 18 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(17) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
return $.extend( true, {}, plot_config, {
title : 'Bar diagram',
description : 'Renders a bar diagram using jqPlot hosted at http://www.jqplot.com.',
@@ -564,10 +566,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 17 */
/* 19 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(3) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend(true, {}, default_config, {
title : '',
library : 'jqPlot',
@@ -591,10 +593,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 18 */
/* 20 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(17) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
return $.extend( true, {}, plot_config, {
title : 'Box plot',
library : 'jqPlot',
@@ -612,10 +614,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 19 */
/* 21 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(17) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : 'Discrete Histogram',
description : 'Derives a discrete histogram from tabular data using R and renders a regular bar diagram using jqPlot hosted at http://www.jqplot.com.',
@@ -631,10 +633,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 20 */
/* 22 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(17) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
return $.extend( true, {}, plot_config, {
title : 'Line chart',
description : 'Renders a line chart using jqPlot hosted at http://www.jqplot.com.',
@@ -655,10 +657,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 21 */
/* 23 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(17) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(19) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( plot_config ) {
return $.extend( true, {}, plot_config, {
title : 'Scatter plot',
description : 'Renders a scatter plot using jqPlot hosted at http://www.jqplot.com.',
@@ -678,7 +680,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 22 */
/* 24 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -697,7 +699,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 23 */
/* 25 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -711,7 +713,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 24 */
/* 26 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -727,7 +729,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
help : 'Select a tree type.',
type : 'select',
display : 'radio',
value : 'radial',
value : 'rectangular',
data : [ { label : 'Circular', value : 'circular' },
{ label : 'Diagonal', value: 'diagonal' },
{ label : 'Hierarchial', value : 'hierarchical' },
@@ -739,9 +741,46 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
type : 'color',
value : '#548DB8'
},
show_label: {
highlighted_color: {
label : 'Select a color for the highlighted branch of tree',
type : 'color',
value : '#ff0000'
},
selected_color: {
label : 'Select a color for the selected branch of tree',
type : 'color',
value : '#00b050'
},
collapse_branch : {
label : 'Collapse the selected branch',
help : 'Select true to collapse the selected branch.',
type : 'select',
display : 'radio',
value : 'false',
data : [ { label : 'True', value : 'true' },
{ label : 'False', value : 'false' } ]
},
prune_branch : {
label : 'Prune the selected branch',
help : 'Select true to prune the selected branch.',
type : 'select',
display : 'radio',
value : 'false',
data : [ { label : 'True', value : 'true' },
{ label : 'False', value : 'false' } ]
},
show_labels: {
label : 'Show/Hide labels',
help : 'Select false to hide labels',
help : 'Select false to hide labels.',
type : 'select',
display : 'radio',
value : 'true',
data : [ { label : 'True', value : 'true' },
{ label : 'False', value : 'false' } ]
},
align_labels: {
label : 'Align labels',
help : 'Select to align the labels of tree. Supported with rectangular, circular, and hierarchical tree types.',
type : 'select',
display : 'radio',
value : 'true',
@@ -754,7 +793,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
/***/ },
/* 25 */
/* 27 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -775,10 +814,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 26 */
/* 28 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(3) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(5) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : 'Heatmap',
description : 'Renders a heatmap from matrix data provided in 3-column format (x, y, observation).',
@@ -841,10 +880,10 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 27 */
/* 29 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(26) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [ __webpack_require__(28) ], __WEBPACK_AMD_DEFINE_RESULT__ = function( default_config ) {
return $.extend( true, {}, default_config, {
title : 'Clustered Heatmap',
description : 'Applies hierarchical clustering to a matrix using R. The data has to be provided in 3-column format. The result is displayed as clustered heatmap.',
@@ -853,7 +892,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 28 */
/* 30 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -867,7 +906,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 29 */
/* 31 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -975,7 +1014,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 30 */
/* 32 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
@@ -1004,7 +1043,7 @@ define(function() { return /******/ (function(modules) { // webpackBootstrap
}.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
/***/ },
/* 31 */
/* 33 */
/***/ function(module, exports, __webpack_require__) {
var __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;!(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_RESULT__ = function() {
config/plugins/visualizations/charts/static/repository/build/registry.js.map
+1 -1
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config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/config.js
+40 -3
View File
@@ -11,7 +11,7 @@ define( [], function() {
help : 'Select a tree type.',
type : 'select',
display : 'radio',
value : 'radial',
value : 'rectangular',
data : [ { label : 'Circular', value : 'circular' },
{ label : 'Diagonal', value: 'diagonal' },
{ label : 'Hierarchial', value : 'hierarchical' },
@@ -23,9 +23,46 @@ define( [], function() {
type : 'color',
value : '#548DB8'
},
show_label: {
highlighted_color: {
label : 'Select a color for the highlighted branch of tree',
type : 'color',
value : '#ff0000'
},
selected_color: {
label : 'Select a color for the selected branch of tree',
type : 'color',
value : '#00b050'
},
collapse_branch : {
label : 'Collapse the selected branch',
help : 'Select true to collapse the selected branch.',
type : 'select',
display : 'radio',
value : 'false',
data : [ { label : 'True', value : 'true' },
{ label : 'False', value : 'false' } ]
},
prune_branch : {
label : 'Prune the selected branch',
help : 'Select true to prune the selected branch.',
type : 'select',
display : 'radio',
value : 'false',
data : [ { label : 'True', value : 'true' },
{ label : 'False', value : 'false' } ]
},
show_labels: {
label : 'Show/Hide labels',
help : 'Select false to hide labels',
help : 'Select false to hide labels.',
type : 'select',
display : 'radio',
value : 'true',
data : [ { label : 'True', value : 'true' },
{ label : 'False', value : 'false' } ]
},
align_labels: {
label : 'Align labels',
help : 'Select to align the labels of tree. Supported with rectangular, circular, and hierarchical tree types.',
type : 'select',
display : 'radio',
value : 'true',
config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/logo.png
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config/plugins/visualizations/charts/static/repository/visualizations/biojs/phylocanvas/wrapper.js
+32 -2
View File
@@ -9,15 +9,45 @@ define( [ 'utilities/utils', 'plugins/biojs/phylocanvas/phylocanvas' ], function
url : dataset.download_url,
success : function( content ) {
try {
var tree = Phylocanvas.default.createTree( options.targets[ 0 ] );
var tree = Phylocanvas.default.createTree( options.targets[ 0 ] ),
node_size = 20,
text_size = 20,
line_width = 2;
// Set different properties of the tree
tree.setTreeType( settings.get( 'tree_type' ) );
tree.branchColour = settings.get( 'edge_color' );
tree.showLabels = settings.get( 'show_label' ) === "true" ? true : false;
tree.showLabels = settings.get( 'show_labels' ) === "true" ? true : false;
tree.alignLabels = settings.get( 'align_labels' ) === "true" ? true : false;
tree.highlightColour = settings.get( 'highlighted_color' );
tree.selectedColour = settings.get( 'selected_color' );
tree.setNodeSize( node_size );
tree.setTextSize( text_size );
tree.lineWidth = line_width;
// Register click event on tree
tree.on('click', function (e) {
var node = tree.getNodeAtMousePosition( e );
// Here collapse action is taking preference.
// Whenver collapse and prune both are selected true,
// collapse action will be performed
// Collapse the selected branch
if( settings.get( 'collapse_branch' ) === "true" ) {
tree.branches[ node.id ].collapsed = true;
tree.draw();
}// Prune the selected branch
else if( settings.get( 'prune_branch' ) === "true" ) {
tree.branches[ node.id ].pruned = true;
tree.draw();
}
});
// Draw the phylogenetic tree
tree.load( content );
chart.state( 'ok', 'Done.' );
options.process.resolve();
// Adjust the size of tree on window resize
$( window ).resize( function() {
tree.fitInPanel( tree.leaves ); tree.draw();
} );
} catch( err ) {
chart.state( 'failed', err );
}