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Fix tests for bed2gff

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and use single-quotes for path, remove deprecated inpterpreter
attribute.
Fixes https://jenkins.galaxyproject.org/job/docker-main-tools-py3/248/
This commit is contained in:
mvdbeek
2019-05-08 17:45:10 +02:00
parent b59fc06d22
commit 8337f55e21
1 changed files with 7 additions and 2 deletions
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tools/filters/bed2gff.xml
+7 -2
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@@ -3,7 +3,7 @@
<edam_operations>
<edam_operation>operation_3434</edam_operation>
</edam_operations>
<command interpreter="python">bed_to_gff_converter.py $input $out_file1</command>
<command>python '$__tool_directory__/bed_to_gff_converter.py' '$input' '$out_file1'</command>
<inputs>
<param format="bed" name="input" type="data" label="Convert this dataset"/>
</inputs>
@@ -13,7 +13,12 @@
<tests>
<test>
<param name="input" value="9.bed"/>
<output name="out_file1" file="bed2gff_out.gff"/>
<output name="out_file1">
<assert_contents>
<has_line line="chr28&#009;bed2gff&#009;mRNA&#009;346188&#009;388197&#009;0&#009;+&#009;.&#009;mRNA BC114771;"/>
<has_line line="chr28&#009;bed2gff&#009;exon&#009;388086&#009;388197&#009;0&#009;+&#009;.&#009;exon BC114771;"/>
</assert_contents>
</output>
</test>
</tests>
<help>