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Galaxy Jobs reports

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Number of jobs per day for current month - displays days of the current month with the total number of jobs for each day
Number of jobs in error per day for current month - displays days of the current month with the total number of jobs in error for each day
All unfinished jobs - displays jobs that are currently in a "new" state, a "queued" state or a "running" state
Number of jobs per month - displays a list of months with the total number of jobs for each month
Number of jobs in error per month - displays a list of months with the total number of jobs in error for each month
Number of jobs per user - displays users sorted in descending order by the number of jobs they have submitted
Number of jobs per tool - displays tools sorted in alphabetical order by tool id and the number of jobs created by the tool
This commit is contained in:
Greg Von Kuster
2008-06-25 14:45:28 +00:00
parent d96c1cd065
commit 80ac564669
23 changed files with 1361 additions and 245 deletions
Download Patch File Download Diff File Expand all files Collapse all files
lib/galaxy/webapps/reports/controllers/jobs.py
+526 -66
View File
@@ -1,4 +1,4 @@
import operator, os
import operator, os, socket
from datetime import datetime
from time import strftime
from galaxy.webapps.reports.base.controller import *
@@ -12,84 +12,79 @@ log = logging.getLogger( __name__ )
class Jobs( BaseController ):
@web.expose
def index( self, trans, **kwd ):
def specified_month_all( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
jobs = self.current_month( trans, **kwd )
return trans.fill_template( 'jobs_current_month.mako', jobs=jobs, msg=msg )
@web.expose
def current_month( self, trans, **kwd ):
month = datetime.utcnow().strftime( "%Y-%m" )
year_month = datetime.utcnow().strftime( "%Y-%m" )
month = params.get( 'id', year_month )
engine = galaxy.model.mapping.metadata.engine
jobs = []
monitor_email = params.get( 'monitor_email', 'monitor@bx.psu.edu' )
s = """
SELECT
wanted_year_month_day AS year_month_day,
num_jobs AS num_jobs,
num_jobs_to_subtract AS num_monitor_jobs,
wanted_day_label AS day_label
SELECT
wanted_year_month_day AS year_month_day,
wanted_day_of_month AS day_of_month,
num_jobs AS num_jobs,
num_jobs_to_subtract AS num_monitor_jobs,
wanted_day_label AS day_label
FROM
(SELECT
year_month_day AS year_month_day,
day_of_month AS day_of_month,
num_jobs_to_subtract AS num_jobs_to_subtract,
to_char(a_timestamp, 'Day') AS day_label
FROM
(SELECT
year_month_day AS year_month_day,
day_of_month AS day_of_month,
num_jobs_to_subtract AS num_jobs_to_subtract,
to_char(a_timestamp, 'Day') AS day_label
substr(job.create_time, 1, 10) AS year_month_day,
substr(job.create_time, 9, 2) AS day_of_month,
count(substr(job.create_time, 1, 10)) AS num_jobs_to_subtract,
to_timestamp(substr(job.create_time, 1, 10), 'YYYY-MM-DD+02') AS a_timestamp
FROM
job
LEFT OUTER JOIN history ON job.history_id = history.id
LEFT OUTER JOIN galaxy_user ON history.user_id = galaxy_user.id
WHERE
substr(job.create_time, 1, 7) = '%s'
AND
galaxy_user.email = '%s'
GROUP BY
substr(job.create_time, 9, 2),
substr(job.create_time, 1, 10)) AS fubar
) AS total_fubar
FULL JOIN
(SELECT
year_month_day AS wanted_year_month_day,
day_of_month AS wanted_day_of_month,
num_jobs AS num_jobs,
to_char(a_timestamp, 'Day') AS wanted_day_label
FROM
(SELECT
foo.create_time AS year_month_day,
foo.day_of_month AS day_of_month,
count(foo.create_time) AS num_jobs,
to_timestamp(foo.create_time, 'YYYY-MM-DD+02') AS a_timestamp
FROM
(SELECT
substr(job.create_time, 1, 10) AS year_month_day,
substr(job.create_time, 9, 2) AS day_of_month,
count(substr(job.create_time, 1, 10)) AS num_jobs_to_subtract,
to_timestamp(substr(job.create_time, 1, 10), 'YYYY-MM-DD+02') AS a_timestamp
substr(job.create_time, 1, 10) AS create_time,
substr(job.create_time, 9, 2) AS day_of_month
FROM
job
LEFT OUTER JOIN history ON job.history_id = history.id
LEFT OUTER JOIN galaxy_user ON history.user_id = galaxy_user.id
WHERE
substr(job.create_time, 1, 7) = '%s'
AND
galaxy_user.email = 'monitor@bx.psu.edu'
GROUP BY
substr(job.create_time, 9, 2),
substr(job.create_time, 1, 10)) AS fubar
) AS total_fubar
FULL JOIN
(SELECT
year_month_day AS wanted_year_month_day,
day_of_month AS wanted_day_of_month,
num_jobs AS num_jobs,
to_char(a_timestamp, 'Day') AS wanted_day_label
FROM
(SELECT
foo.create_time AS year_month_day,
foo.day_of_month AS day_of_month,
count(foo.create_time) AS num_jobs,
to_timestamp(foo.create_time, 'YYYY-MM-DD+02') AS a_timestamp
FROM
(SELECT
substr(job.create_time, 1, 10) AS create_time,
substr(job.create_time, 9, 2) AS day_of_month
FROM
job
WHERE
substr(job.create_time, 1, 7) = '%s'
GROUP BY
day_of_month,
job.create_time) AS foo
GROUP BY
day_of_month,
create_time
ORDER BY
create_time DESC) AS bar
) AS foobar
ON
foobar.wanted_year_month_day = total_fubar.year_month_day
ORDER BY
year_month_day DESC
""" % ( month, month )
job.create_time) AS foo
GROUP BY
day_of_month,
create_time
ORDER BY
create_time DESC) AS bar
) AS foobar
ON
foobar.wanted_year_month_day = total_fubar.year_month_day
ORDER BY
year_month_day DESC
""" % ( month, monitor_email, month )
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
try:
@@ -97,5 +92,470 @@ class Jobs( BaseController ):
except:
num_user_jobs = job.num_jobs
jobs.append( ( job.day_label, job.year_month_day, num_user_jobs, job.num_monitor_jobs, job.num_jobs ) )
return jobs
return trans.fill_template( 'jobs_specified_month_all.mako', month=month, jobs=jobs, msg=msg )
@web.expose
def specified_month_in_error( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
month = datetime.utcnow().strftime( "%Y-%m" )
engine = galaxy.model.mapping.metadata.engine
jobs = []
s = """
SELECT
year_month_day AS year_month_day,
day_of_month AS day_of_month,
num_jobs AS num_jobs,
to_char(a_timestamp, 'Day') AS day_label
FROM
(SELECT
foo.create_time AS year_month_day,
foo.day_of_month AS day_of_month,
count(foo.create_time) AS num_jobs,
to_timestamp(foo.create_time, 'YYYY-MM-DD') AS a_timestamp
FROM
(SELECT
substr(create_time, 1, 10) AS create_time,
substr(create_time, 9, 2) AS day_of_month
FROM
job
WHERE
state = 'error'
AND
substr(create_time, 1, 7) = '%s'
GROUP BY
day_of_month,
create_time) AS foo
GROUP BY
day_of_month,
create_time
ORDER BY
create_time DESC) AS bar
""" % ( month )
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
jobs.append( ( job.day_label, job.year_month_day, job.num_jobs ) )
return trans.fill_template( 'jobs_specified_month_in_error.mako', month=month, jobs=jobs, msg=msg )
@web.expose
def specified_date_in_error( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
engine = galaxy.model.mapping.metadata.engine
jobs = []
today = datetime.utcnow().strftime( "%Y-%m-%d" )
specified_date = params.get( 'id', today )
s = """
SELECT
job.id AS id,
job.state AS state,
substr(job.create_time, 1, 19) AS create_time,
substr(job.update_time, 1, 19) AS update_time,
job.tool_id AS tool_id,
job.command_line AS command_line,
job.stderr AS stderr,
job.session_id AS session_id,
job.traceback as stack_trace,
job.info as info,
galaxy_user.email AS user_email,
galaxy_session.remote_addr AS remote_address
FROM
job
LEFT OUTER JOIN history ON job.history_id = history.id
LEFT OUTER JOIN galaxy_user ON history.user_id = galaxy_user.id
LEFT OUTER JOIN galaxy_session ON job.session_id = galaxy_session.id
WHERE
state = 'error'
AND
substr(job.create_time, 1, 10) = '%s'
ORDER BY
job.id DESC
""" % specified_date
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
remote_host = job.remote_address
if job.remote_address:
try:
remote_host = socket.gethostbyaddr( job.remote_address )[0]
except:
pass
jobs.append( ( job.state, job.id, job.create_time, job.update_time, job.session_id, job.tool_id, job.user_email, remote_host, job.command_line, job.stderr, job.stack_trace, job.info ) )
return trans.fill_template( 'jobs_specified_date_in_error.mako', specified_date=specified_date, jobs=jobs, msg=msg )
@web.expose
def specified_date_all( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
engine = galaxy.model.mapping.metadata.engine
jobs = []
today = datetime.utcnow().strftime( "%Y-%m-%d" )
specified_date = params.get( 'id', today )
monitor_email = params.get( 'monitor_email', 'monitor@bx.psu.edu' )
s = """
SELECT
job.id AS id,
job.state AS state,
substr(job.create_time, 1, 19) AS create_time,
substr(job.update_time, 1, 19) AS update_time,
job.tool_id AS tool_id,
job.command_line AS command_line,
job.stderr AS stderr,
job.session_id AS session_id,
job.traceback as stack_trace,
job.info as info,
galaxy_user.email AS user_email,
galaxy_session.remote_addr AS remote_address
FROM
job
LEFT OUTER JOIN history ON job.history_id = history.id
LEFT OUTER JOIN galaxy_user ON history.user_id = galaxy_user.id
LEFT OUTER JOIN galaxy_session ON job.session_id = galaxy_session.id
WHERE
substr(job.create_time, 1, 10) = '%s'
AND
galaxy_user.email != '%s'
ORDER BY
job.id DESC
""" % ( specified_date, monitor_email )
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
remote_host = job.remote_address
if job.remote_address:
try:
remote_host = socket.gethostbyaddr( job.remote_address )[0]
except:
pass
jobs.append( ( job.state, job.id, job.create_time, job.update_time, job.session_id, job.tool_id, job.user_email, remote_host, job.command_line, job.stderr, job.stack_trace, job.info ) )
return trans.fill_template( 'jobs_specified_date_all.mako', specified_date=specified_date, jobs=jobs, msg=msg )
@web.expose
def all_unfinished( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
engine = galaxy.model.mapping.metadata.engine
jobs = []
s = """
SELECT
job.id AS id,
job.state AS state,
substr(job.create_time, 1, 19) AS create_time,
substr(job.update_time, 1, 19) AS update_time,
job.tool_id AS tool_id,
job.command_line AS command_line,
job.stderr AS stderr,
job.session_id AS session_id,
job.traceback as stack_trace,
job.info as info,
galaxy_user.email AS user_email,
galaxy_session.remote_addr AS remote_address
FROM
job
LEFT OUTER JOIN history ON job.history_id = history.id
LEFT OUTER JOIN galaxy_user ON history.user_id = galaxy_user.id
LEFT OUTER JOIN galaxy_session ON job.session_id = galaxy_session.id
WHERE
job.state = 'running'
OR
job.state = 'queued'
OR
job.state = 'new'
ORDER BY
job.update_time DESC
"""
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
remote_host = job.remote_address
if job.remote_address:
try:
remote_host = socket.gethostbyaddr( job.remote_address )[0]
except:
pass
jobs.append( ( job.state, job.id, job.create_time, job.update_time, job.session_id, job.tool_id, job.user_email, remote_host, job.command_line, job.stderr, job.stack_trace, job.info ) )
return trans.fill_template( 'jobs_all_unfinished.mako', jobs=jobs, msg=msg )
@web.expose
def per_month_all( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
engine = galaxy.model.mapping.metadata.engine
jobs = []
monitor_email = params.get( 'monitor_email', 'monitor@bx.psu.edu' )
s = """
SELECT
wanted_year_month AS year_month,
num_jobs AS num_jobs,
num_monitor_jobs AS num_monitor_jobs,
wanted_month_label AS month_label,
wanted_year_label AS year_label
FROM
(SELECT
year_month AS year_month,
num_monitor_jobs AS num_monitor_jobs,
to_timestamp(year_month, 'YYYY-MM-DD+02') AS a_timestamp
FROM
(SELECT
substr(job.create_time, 1, 7) AS year_month,
count(substr(job.create_time, 1, 10)) AS num_monitor_jobs
FROM
job
LEFT OUTER JOIN history ON job.history_id = history.id
LEFT OUTER JOIN galaxy_user ON history.user_id = galaxy_user.id
WHERE
galaxy_user.email = '%s'
GROUP BY
substr(job.create_time, 1, 7)
) AS fubar
) AS total_fubar
FULL JOIN
(SELECT
num_jobs AS num_jobs,
wanted_year_month AS wanted_year_month,
to_char(a_timestamp, 'Month') AS wanted_month_label,
to_char(a_timestamp, 'YYYY') AS wanted_year_label
FROM
(SELECT
num_jobs AS num_jobs,
wanted_year_month AS wanted_year_month,
to_timestamp(wanted_year_month, 'YYYY-MM-DD+02' ) AS a_timestamp
FROM
(SELECT
count(id) AS num_jobs,
substr(create_time, 1, 7) AS wanted_year_month
FROM
job
GROUP BY
substr(create_time, 1, 7)
ORDER BY
substr(create_time, 1, 7) DESC) AS foo
) AS bar
) AS foobar
ON
foobar.wanted_year_month = total_fubar.year_month
ORDER BY
year_month DESC
""" % monitor_email
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
if job.num_jobs is None:
job.num_jobs = 0
if job.num_monitor_jobs is None:
job.num_monitor_jobs = 0
num_user_jobs = job.num_jobs - job.num_monitor_jobs
jobs.append( ( job.year_month, num_user_jobs, job.num_monitor_jobs, job.num_jobs, job.month_label, job.year_label ) )
return trans.fill_template( 'jobs_per_month_all.mako', jobs=jobs, msg=msg )
@web.expose
def per_month_in_error( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
engine = galaxy.model.mapping.metadata.engine
jobs = []
s = """
SELECT
count(id) AS num_jobs,
substr(create_time, 1, 7) AS year_month
FROM
job
WHERE
state = 'error'
GROUP BY
year_month
ORDER BY
year_month DESC
"""
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
jobs.append( ( job.year_month, job.num_jobs ) )
return trans.fill_template( 'jobs_per_month_in_error.mako', jobs=jobs, msg=msg )
@web.expose
def per_user( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
engine = galaxy.model.mapping.metadata.engine
jobs = []
s = """
SELECT
galaxy_user.email AS user_email,
count(job.id) AS num_jobs
FROM
job
LEFT OUTER JOIN galaxy_session ON galaxy_session.id = job.session_id
LEFT OUTER JOIN galaxy_user ON galaxy_session.user_id = galaxy_user.id
GROUP BY
user_email
ORDER BY
num_jobs DESC,
user_email
"""
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
jobs.append( ( job.user_email, job.num_jobs ) )
return trans.fill_template( 'jobs_per_user.mako', jobs=jobs, msg=msg )
@web.expose
def user_per_month( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
engine = galaxy.model.mapping.metadata.engine
jobs = []
email = params.get( 'id', 'monitor@bx.psu.edu' )
# The @ char has been converted to an 'X'
email = email.replace( 'X', '@' )
s = """
SELECT
num_jobs AS num_jobs,
year_month AS year_month,
to_char(a_timestamp, 'Month') AS month_label,
to_char(a_timestamp, 'YYYY') AS year_label
FROM
(SELECT
num_jobs AS num_jobs,
year_month AS year_month,
to_timestamp(year_month, 'YYYY-MM-DD') AS a_timestamp
FROM
(SELECT
count(job.id) AS num_jobs,
substr(job.create_time, 1, 7) AS year_month
FROM
job
LEFT OUTER JOIN galaxy_session ON galaxy_session.id = job.session_id
LEFT OUTER JOIN galaxy_user ON galaxy_session.user_id = galaxy_user.id
WHERE
galaxy_user.email = '%s'
GROUP BY
year_month
ORDER BY
year_month DESC) AS foo) AS bar
""" % email
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
jobs.append( ( job.year_month, job.num_jobs ) )
return trans.fill_template( 'jobs_user_per_month.mako', email=email, jobs=jobs, msg=msg )
@web.expose
def user_for_month( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
engine = galaxy.model.mapping.metadata.engine
jobs = []
email = params.get( 'id', 'monitor@bx.psu.edu' )
# The @ char has been converted to an 'X'
email = email.replace( 'X', '@' )
year_month = datetime.utcnow().strftime( "%Y-%m" )
month = params.get( 'month', year_month )
s = """
SELECT
job.id AS id,
job.state AS state,
substr(job.create_time, 1, 19) AS create_time,
substr(job.update_time, 1, 19) AS update_time,
job.tool_id AS tool_id,
job.command_line AS command_line,
job.stderr AS stderr,
job.session_id AS session_id,
job.traceback as stack_trace,
job.info as info,
galaxy_user.email AS user_email,
galaxy_session.remote_addr AS remote_address
FROM
job
LEFT OUTER JOIN history ON job.history_id = history.id
LEFT OUTER JOIN galaxy_user ON history.user_id = galaxy_user.id
LEFT OUTER JOIN galaxy_session ON job.session_id = galaxy_session.id
WHERE
galaxy_user.email = '%s'
AND
substr(job.create_time, 1, 7) = '%s'
ORDER BY
job.id DESC
""" % ( email, month )
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
remote_host = job.remote_address
if job.remote_address:
try:
remote_host = socket.gethostbyaddr( job.remote_address )[0]
except:
pass
jobs.append( ( job.state, job.id, job.create_time, job.update_time, job.session_id, job.tool_id, job.user_email, remote_host, job.command_line, job.stderr, job.stack_trace, job.info ) )
return trans.fill_template( 'jobs_user_for_month.mako', email=email, month=month, jobs=jobs, msg=msg )
@web.expose
def per_tool( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
engine = galaxy.model.mapping.metadata.engine
jobs = []
s = """
SELECT
tool_id AS tool_id,
count(tool_id) AS times_run
FROM
job
GROUP BY tool_id
ORDER BY tool_id
"""
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
jobs.append( ( job.tool_id, job.times_run ) )
return trans.fill_template( 'jobs_per_tool.mako', jobs=jobs, msg=msg )
@web.expose
def tool_per_month( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
engine = galaxy.model.mapping.metadata.engine
jobs = []
tool_id = params.get( 'id', 'Add a column1' )
s = """
SELECT
count(id) AS num_jobs,
substr(create_time, 1, 7) AS year_month
FROM
job
WHERE
tool_id = '%s'
GROUP BY
year_month
ORDER BY
year_month DESC
""" % tool_id
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
jobs.append( ( job.year_month, job.num_jobs ) )
return trans.fill_template( 'jobs_tool_per_month.mako', tool_id=tool_id, jobs=jobs, msg=msg )
@web.expose
def tool_for_month( self, trans, **kwd ):
params = util.Params( kwd )
msg = ''
engine = galaxy.model.mapping.metadata.engine
jobs = []
tool_id = params.get( 'id', 'Add a column1' )
year_month = datetime.utcnow().strftime( "%Y-%m" )
month = params.get( 'month', year_month )
s = """
SELECT
job.id AS id,
job.state AS state,
substr(job.create_time, 1, 19) AS create_time,
substr(job.update_time, 1, 19) AS update_time,
job.tool_id AS tool_id,
job.command_line AS command_line,
job.stderr AS stderr,
job.session_id AS session_id,
job.traceback as stack_trace,
job.info as info,
galaxy_user.email AS user_email,
galaxy_session.remote_addr AS remote_address
FROM
job
LEFT OUTER JOIN history ON job.history_id = history.id
LEFT OUTER JOIN galaxy_user ON history.user_id = galaxy_user.id
LEFT OUTER JOIN galaxy_session ON job.session_id = galaxy_session.id
WHERE
tool_id = '%s'
AND
substr(job.create_time, 1, 7) = '%s'
ORDER BY
job.id DESC
""" % ( tool_id, month )
job_rows = engine.text( s ).execute().fetchall()
for job in job_rows:
remote_host = job.remote_address
if job.remote_address:
try:
remote_host = socket.gethostbyaddr( job.remote_address )[0]
except:
pass
jobs.append( ( job.state, job.id, job.create_time, job.update_time, job.session_id, job.tool_id, job.user_email, remote_host, job.command_line, job.stderr, job.stack_trace, job.info ) )
return trans.fill_template( 'jobs_tool_for_month.mako', tool_id=tool_id, month=month, jobs=jobs, msg=msg )
lib/galaxy/webapps/reports/controllers/root.py
-3
View File
@@ -19,7 +19,4 @@ class Report( BaseController ):
blog_url = trans.app.config.get( "blog_url", "http://g2.trac.bx.psu.edu/blog" )
screencasts_url = trans.app.config.get( "screencasts_url", "http://g2.trac.bx.psu.edu/wiki/ScreenCasts" )
return trans.fill_template( "masthead.mako", brand=brand, wiki_url=wiki_url, blog_url=blog_url,bugs_email=bugs_email, screencasts_url=screencasts_url )
@web.expose
def main_frame( self, trans ):
return trans.fill_template( "main_frame.mako" )
lib/galaxy/webapps/reports/controllers/system.py
+1 -1
View File
@@ -155,7 +155,7 @@ class System( BaseController ):
def disk_usage( self, trans, **kwd ):
file_path = trans.app.config.file_path
disk_usage = self.get_disk_usage( file_path )
min_file_size = 2**32 # 4 Gb
min_file_size = 1000 # 4 Gb
file_size_str = nice_size( min_file_size )
d = trans.model.Dataset
datasets = []
lib/galaxy/webapps/reports/static/january_2008_style/blue/base.css
+42 -2
View File
@@ -59,12 +59,13 @@ div.reportParamHelp a
div.reportBody
{
background: #FFFFFF;
background-image: url(report_body_bg.png);
background-repeat: repeat-x;
background-position: top;
padding: 5px;
padding-left: 10px;
padding-right: 10px;
width: 100%;
scrolling: no;
}
div.reportBody div.reportTitle
@@ -258,7 +259,46 @@ table.colored tr.header
border-bottom: solid #d8b365 1px;
font-weight: bold;
}
table.colored tr.headernew
{
background: #add8e6;
background-repeat: repeat-x;
background-position: top;
border-bottom: solid #d8b365 1px;
font-weight: bold;
}
table.colored tr.headerqueued
{
background: #ee82ee;
background-repeat: repeat-x;
background-position: top;
border-bottom: solid #d8b365 1px;
font-weight: bold;
}
table.colored tr.headerrunning
{
background: #ffff00;
background-repeat: repeat-x;
background-position: top;
border-bottom: solid #d8b365 1px;
font-weight: bold;
}
table.colored tr.headererror
{
background: #ff0000;
background-repeat: repeat-x;
background-position: top;
border-bottom: solid #d8b365 1px;
font-weight: bold;
}
table.colored tr.headerok
{
background: #008000;
background-repeat: repeat-x;
background-position: top;
border-bottom: solid #d8b365 1px;
font-weight: bold;
}
table.colored tr
{
background: white;
lib/galaxy/webapps/reports/templates/base.mako
-27
View File
@@ -1,27 +0,0 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html>
<head>
<title>${self.title()}</title>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
${self.stylesheets()}
${self.javascripts()}
</head>
<body>
${next.body()}
</body>
</html>
## Default title
<%def name="title()"></%def>
## Default stylesheets
<%def name="stylesheets()">
<link href="${h.url_for('/static/style/base.css')}" rel="stylesheet" type="text/css" />
</%def>
## Default javascripts
<%def name="javascripts()">
## <!--[if lt IE 7]>
## <script type='text/javascript' src="/static/scripts/IE7.js"> </script>
## <![endif]-->
</%def>
lib/galaxy/webapps/reports/templates/base_panels.mako
+11 -7
View File
@@ -6,13 +6,15 @@
## Default stylesheets
<%def name="stylesheets()">
<link href="${h.url_for('/static/style/base.css')}" rel="stylesheet" type="text/css" />
</%def>
## Default javascripts
<%def name="javascripts()">
<!--[if lt IE 7]>
<script type='text/javascript' src="/static/scripts/IE7.js"> </script>
<script type='text/javascript' src="/static/scripts/ie7-recalc.js"> </script>
<script type='text/javascript' src="/static/scripts/IE7.js"></script>
<script type='text/javascript' src="/static/scripts/IE8.js"></script>
<script type='text/javascript' src="/static/scripts/ie7-recalc.js"></script>
<![endif]-->
</%def>
@@ -22,25 +24,27 @@
## Masthead
<%def name="masthead()">
<iframe name="galaxy_masthead" src="${h.url_for( 'masthead' )}" width="38" height="100%" frameborder="0" scroll="no" style="margin: 0; border: 0 none; width: 100%; height: 38px; overflow: hidden;"> </iframe>
<iframe name="galaxy_masthead" src="${h.url_for( '/root/masthead' )}" width="100%" height="38" frameborder="0" scrolling="no" style="margin: 0; border: 0 none; width: 100%; height: 38px; overflow: hidden;"> </iframe>
</%def>
## Document
<html lang="en">
<head>
<title>${self.title()}</title>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
${self.javascripts()}
${self.stylesheets()}
</head>
<body scroll="no">
<body>
## Background displays first
<div id="background"></div>
## Layer iframes over backgrounds
## Layer masthead iframe over background
<div id="masthead">
${self.masthead()}
</div>
<div id="center">
${self.center_panel()}
## Display main report body
<div id="main_body">
${self.main_body()}
</div>
## Allow other body level elements
${next.body()}
lib/galaxy/webapps/reports/templates/index.mako
+20 -6
View File
@@ -1,8 +1,22 @@
<%inherit file="/base_panels.mako"/>
<%def name="center_panel()">
## Display the reports in the middle frame
<%
center_url = h.url_for( 'main_frame' )
%>
<iframe name="main_frame" id="main_frame" frameborder="0" style="position: absolute; width: 100%; height: 100%;" src="${center_url}"> </iframe>
<%def name="main_body()">
## Display the available reports
<div class="body">
<h3 align="center">Galaxy Reports</h3>
<table align="center" width="40%" class="colored">
<tr><td><div class="reportTitle">Job Information</div></td></tr>
<tr><td><div class="reportBody"><a href="${h.url_for( controller='jobs', action='specified_month_all' )}">Number of jobs per day for current month</a> - displays days of the current month with the total number of jobs for each day</div></td></tr>
<tr><td><div class="reportBody"><a href="${h.url_for( controller='jobs', action='specified_month_in_error' )}">Number of jobs in error per day for current month</a> - displays days of the current month with the total number of jobs in error for each day</div></td></tr>
<tr><td><div class="reportBody"><a href="${h.url_for( controller='jobs', action='all_unfinished' )}">All unfinished jobs</a> - displays jobs that are currently in a "new" state, a "queued" state or a "running" state</div></td></tr>
<tr><td><div class="reportBody"><a href="${h.url_for( controller='jobs', action='per_month_all' )}">Number of jobs per month</a> - displays a list of months with the total number of jobs for each month</div></td></tr>
<tr><td><div class="reportBody"><a href="${h.url_for( controller='jobs', action='per_month_in_error' )}">Number of jobs in error per month</a> - displays a list of months with the total number of jobs in error for each month</div></td></tr>
<tr><td><div class="reportBody"><a href="${h.url_for( controller='jobs', action='per_user' )}">Number of jobs per user</a> - displays users sorted in descending order by the number of jobs they have submitted</div></td></tr>
<tr><td><div class="reportBody"><a href="${h.url_for( controller='jobs', action='per_tool' )}">Number of jobs per tool</a> - displays tools sorted in alphabetical order by tool id and the number of jobs created by the tool</div></td></tr>
</table>
<br clear="left"/><br/><br/><br/>
<table align="center" width="40%" class="colored">
<tr><td><div class="reportTitle">System Information</div></td></tr>
<tr><td><div class="reportBody"><a href="${h.url_for( controller='system', action='index' )}">Disk space, old histories and datasets</a> - displays history and dataset information including disk space allocation where datasets are stored</div></td></tr>
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_all_unfinished.mako
+83
View File
@@ -0,0 +1,83 @@
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">All Unfinished Jobs</h3>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
%if len( jobs ) == 0:
<tr><td colspan="5">There are no unfinished jobs</td></tr>
%else:
%for job in jobs:
<%
state = job[0]
if state == 'new':
rowdef = '<tr class="headernew">'
elif state == 'queued':
rowdef = '<tr class="headerqueued">'
elif state == 'running':
rowdef = '<tr class="headerrunning">'
%>
${rowdef}
<td>State</td>
<td>Job Id</td>
<td>Create Time</td>
<td>Update Time</td>
<td>Session Id</td>
</tr>
<tr>
<td>${job[0]}</td>
<td>${job[1]}</td>
<td>${job[2]}</td>
<td>${job[3]}</td>
<td>${job[4]}</td>
</tr>
<tr class="header">
<td colspan="3">Tool</td>
<td colspan="2">User</td>
</tr>
<tr>
<td colspan="3">${job[5]}</td>
<td colspan="2">${job[6]}</td>
</tr>
<tr class="header">
<td colspan="5">Remote Host</td>
</tr>
<tr>
<td colspan="5">${job[7]}</td>
</tr>
<tr class="header">
<td colspan="5">Command Line</td>
</tr>
<tr>
<td colspan="5">${job[8]}</td>
</tr>
<tr class="header">
<td colspan="5">Stderr</td>
</tr>
<tr>
<td colspan="5">${job[9]}</td>
</tr>
<tr class="header">
<td colspan="5">Stack Trace</td>
</tr>
<tr>
<td colspan="5">${job[10]}</td>
</tr>
<tr class="header">
<td colspan="5">Info</td>
</tr>
<tr>
<td colspan="5">${job[11]}</td>
</tr>
<tr><td colspan="5">&nbsp;</td></tr>
<tr><td colspan="5">&nbsp;</td></tr>
%endfor
%endif
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_per_month_all.mako
+39
View File
@@ -0,0 +1,39 @@
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">Jobs Per Month</h3>
<h4 align="center">Click Year-Month to view the number of jobs for each day of that month</h4>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
%if len( jobs ) == 0:
<tr class="header"><td colspan="5">There are no jobs</td></tr>
%else:
<tr class="header">
<td>Year-Month</td>
<td>User Jobs</td>
<td>Monitor Jobs</td>
<td>Total</td>
</tr>
<% ctr = 0 %>
%for job in jobs:
%if ctr % 2 == 1:
<tr class="odd_row">
%else:
<tr class="tr">
%endif
<td><a href="${h.url_for( controller='jobs', action='specified_month_all', id=job[0] )}">${job[0]}</a></td>
<td>${job[1]}</td>
<td>${job[2]}</td>
<td>${job[3]}</td>
</tr>
<% ctr += 1 %>
%endfor
%endif
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_per_month_in_error.mako
+35
View File
@@ -0,0 +1,35 @@
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">Jobs In Error Per Month</h3>
<h4 align="center">Click Year-Month to view the number of jobs in error for each day of that month</h4>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
%if len( jobs ) == 0:
<tr class="header"><td colspan="5">There are no jobs in error</td></tr>
%else:
<tr class="header">
<td>Year-Month</td>
<td>Jobs In Error</td>
</tr>
<% ctr = 0 %>
%for job in jobs:
%if ctr % 2 == 1:
<tr class="odd_row">
%else:
<tr class="tr">
%endif
<td><a href="${h.url_for( controller='jobs', action='specified_month_in_error', id=job[0] )}">${job[0]}</a></td>
<td>${job[1]}</td>
</tr>
<% ctr += 1 %>
%endfor
%endif
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_per_tool.mako
+35
View File
@@ -0,0 +1,35 @@
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">Jobs Per Tool</h3>
<h4 align="center">Click Tool Id to view jobs per month for that tool</h4>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
%if len( jobs ) == 0:
<tr class="header"><td colspan="5">There are no jobs</td></tr>
%else:
<tr class="header">
<td>Tool id</td>
<td>Total Jobs</td>
</tr>
<% ctr = 0 %>
%for job in jobs:
%if ctr % 2 == 1:
<tr class="odd_row">
%else:
<tr class="tr">
%endif
<td><a href="${h.url_for( controller='jobs', action='tool_per_month', id=job[0] )}">${job[0]}</a></td>
<td>${job[1]}</td>
</tr>
<% ctr += 1 %>
%endfor
%endif
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_per_user.mako
+35
View File
@@ -0,0 +1,35 @@
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">Jobs Per User</h3>
<h4 align="center">Click User to view jobs per month for that user</h4>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
%if len( jobs ) == 0:
<tr class="header"><td colspan="5">There are no jobs</td></tr>
%else:
<tr class="header">
<td>User</td>
<td>Total Jobs</td>
</tr>
<% ctr = 0 %>
%for job in jobs:
%if ctr % 2 == 1:
<tr class="odd_row">
%else:
<tr class="tr">
%endif
<td><a href="${h.url_for( controller='jobs', action='user_per_month', id=job[0] )}">${job[0]}</a></td>
<td>${job[1]}</td>
</tr>
<% ctr += 1 %>
%endfor
%endif
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_specified_date_all.mako
+87
View File
@@ -0,0 +1,87 @@
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">All Jobs for ${specified_date}</h3>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
%if len( jobs ) == 0:
<tr><td colspan="5">There are no jobs for ${specified_date}</td></tr>
%else:
%for job in jobs:
<%
state = job[0]
if state == 'new':
rowdef = '<tr class="headernew">'
elif state == 'queued':
rowdef = '<tr class="headerqueued">'
elif state == 'running':
rowdef = '<tr class="headerrunning">'
elif state == 'error':
rowdef = '<tr class="headererror">'
elif state == 'ok':
rowdef = '<tr class="headerok">'
%>
${rowdef}
<td>State</td>
<td>Job Id</td>
<td>Create Time</td>
<td>Update Time</td>
<td>Session Id</td>
</tr>
<tr>
<td>${job[0]}</td>
<td>${job[1]}</td>
<td>${job[2]}</td>
<td>${job[3]}</td>
<td>${job[4]}</td>
</tr>
<tr class="header">
<td colspan="3">Tool</td>
<td colspan="2">User</td>
</tr>
<tr>
<td colspan="3">${job[5]}</td>
<td colspan="2">${job[6]}</td>
</tr>
<tr class="header">
<td colspan="5">Remote Host</td>
</tr>
<tr>
<td colspan="5">${job[7]}</td>
</tr>
<tr class="header">
<td colspan="5">Command Line</td>
</tr>
<tr>
<td colspan="5">${job[8]}</td>
</tr>
<tr class="header">
<td colspan="5">Stderr</td>
</tr>
<tr>
<td colspan="5">${job[9]}</td>
</tr>
<tr class="header">
<td colspan="5">Stack Trace</td>
</tr>
<tr>
<td colspan="5">${job[10]}</td>
</tr>
<tr class="header">
<td colspan="5">Info</td>
</tr>
<tr>
<td colspan="5">${job[11]}</td>
</tr>
<tr><td colspan="5">&nbsp;</td></tr>
<tr><td colspan="5">&nbsp;</td></tr>
%endfor
%endif
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_specified_date_in_error.mako
+74
View File
@@ -0,0 +1,74 @@
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">All Jobs in Error for ${specified_date}</h3>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
%if len( jobs ) == 0:
<tr><td colspan="5">There are no jobs in error for ${specified_date}</td></tr>
%else:
%for job in jobs:
<tr class="headererror">
<td>State</td>
<td>Job Id</td>
<td>Create Time</td>
<td>Update Time</td>
<td>Session Id</td>
</tr>
<tr>
<td>${job[0]}</td>
<td>${job[1]}</td>
<td>${job[2]}</td>
<td>${job[3]}</td>
<td>${job[4]}</td>
</tr>
<tr class="header">
<td colspan="3">Tool</td>
<td colspan="2">User</td>
</tr>
<tr>
<td colspan="3">${job[5]}</td>
<td colspan="2">${job[6]}</td>
</tr>
<tr class="header">
<td colspan="5">Remote Host</td>
</tr>
<tr>
<td colspan="5">${job[7]}</td>
</tr>
<tr class="header">
<td colspan="5">Command Line</td>
</tr>
<tr>
<td colspan="5">${job[8]}</td>
</tr>
<tr class="header">
<td colspan="5">Stderr</td>
</tr>
<tr>
<td colspan="5">${job[9]}</td>
</tr>
<tr class="header">
<td colspan="5">Stack Trace</td>
</tr>
<tr>
<td colspan="5">${job[10]}</td>
</tr>
<tr class="header">
<td colspan="5">Info</td>
</tr>
<tr>
<td colspan="5">${job[11]}</td>
</tr>
<tr><td colspan="5">&nbsp;</td></tr>
<tr><td colspan="5">&nbsp;</td></tr>
%endfor
%endif
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_current_month.mako → lib/galaxy/webapps/reports/templates/jobs_specified_month_all.mako
+14 -22
View File
@@ -1,34 +1,28 @@
<%inherit file="/base.mako"/>
<html>
<head>
<title>Jobs for current month</title>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
<link href="${h.url_for('/static/style/base.css')}" rel="stylesheet" type="text/css" />
</head>
<body>
<h3 align="center">Jobs for Current Month</h3>
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">All Jobs for ${month}</h3>
<h4 align="center">Click Total Jobs to see jobs for that day</h4>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
<tr><td colspan="5"><div class="reportTitle">Jobs for Current Month</div></td></tr>
%if len( jobs ) == 0:
<tr class="header"><td colspan="5">There are no jobs for the current month</td></tr>
<tr class="header"><td colspan="5">There are no jobs for ${month}</td></tr>
%else:
<tr class="header">
<td>Day</td>
<td>Date</td>
<td>User Jobs</td>
<td>Monitor Jobs</td>
<td>Total</td>
<td>Total Jobs</td>
</tr>
<%
ctr = 0
%>
<% ctr = 0 %>
%for job in jobs:
%if len( jobs ) > 2 and ctr % 2 == 1:
%if ctr % 2 == 1:
<tr class="odd_row">
%else:
<tr class="tr">
@@ -37,13 +31,11 @@
<td>${job[1]}</td>
<td>${job[2]}</td>
<td>${job[3]}</td>
<td>${job[4]}</td>
<td><a href="${h.url_for( controller='jobs', action='specified_date_all', id=job[1] )}">${job[4]}</a></td>
</tr>
<%
ctr += 1
%>
<% ctr += 1 %>
%endfor
%endif
</table>
</body>
</html>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_specified_month_in_error.mako
+37
View File
@@ -0,0 +1,37 @@
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">Jobs in Error for ${month}</h3>
<h4 align="center">Click Jobs in Error to view jobs in error for that day</h4>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
%if len( jobs ) == 0:
<tr class="header"><td colspan="5">There are no jobs in error for ${month}</td></tr>
%else:
<tr class="header">
<td>Day</td>
<td>Date</td>
<td>Jobs in Error</td>
</tr>
<% ctr = 0 %>
%for job in jobs:
%if ctr % 2 == 1:
<tr class="odd_row">
%else:
<tr class="tr">
%endif
<td>${job[0]}</td>
<td>${job[1]}</td>
<td><a href="${h.url_for( controller='jobs', action='specified_date_in_error', id=job[1] )}">${job[2]}</a></td>
</tr>
<% ctr += 1 %>
%endfor
%endif
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_tool_for_month.mako
+87
View File
@@ -0,0 +1,87 @@
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">Jobs for tool ${tool_id} during ${month}</h3>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
%if len( jobs ) == 0:
<tr class="header"><td colspan="5">There are no jobs for ${tool_id} during ${month}</td></tr>
%else:
%for job in jobs:
<%
state = job[0]
if state == 'new':
rowdef = '<tr class="headernew">'
elif state == 'queued':
rowdef = '<tr class="headerqueued">'
elif state == 'running':
rowdef = '<tr class="headerrunning">'
elif state == 'error':
rowdef = '<tr class="headererror">'
elif state == 'ok':
rowdef = '<tr class="headerok">'
%>
${rowdef}
<td>State</td>
<td>Job Id</td>
<td>Create Time</td>
<td>Update Time</td>
<td>Session Id</td>
</tr>
<tr>
<td>${job[0]}</td>
<td>${job[1]}</td>
<td>${job[2]}</td>
<td>${job[3]}</td>
<td>${job[4]}</td>
</tr>
<tr class="header">
<td colspan="3">Tool</td>
<td colspan="2">User</td>
</tr>
<tr>
<td colspan="3">${job[5]}</td>
<td colspan="2">${job[6]}</td>
</tr>
<tr class="header">
<td colspan="5">Remote Host</td>
</tr>
<tr>
<td colspan="5">${job[7]}</td>
</tr>
<tr class="header">
<td colspan="5">Command Line</td>
</tr>
<tr>
<td colspan="5">${job[8]}</td>
</tr>
<tr class="header">
<td colspan="5">Stderr</td>
</tr>
<tr>
<td colspan="5">${job[9]}</td>
</tr>
<tr class="header">
<td colspan="5">Stack Trace</td>
</tr>
<tr>
<td colspan="5">${job[10]}</td>
</tr>
<tr class="header">
<td colspan="5">Info</td>
</tr>
<tr>
<td colspan="5">${job[11]}</td>
</tr>
<tr><td colspan="5">&nbsp;</td></tr>
<tr><td colspan="5">&nbsp;</td></tr>
%endfor
%endif
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_tool_per_month.mako
+35
View File
@@ -0,0 +1,35 @@
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">Jobs per month for tool ${tool_id}</h3>
<h4 align="center">Click Total Jobs to see the tool's jobs for that month</h4>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
%if len( jobs ) == 0:
<tr class="header"><td colspan="5">There are no jobs</td></tr>
%else:
<tr class="header">
<td>Year-Month</td>
<td>Total Jobs</td>
</tr>
<% ctr = 0 %>
%for job in jobs:
%if ctr % 2 == 1:
<tr class="odd_row">
%else:
<tr class="tr">
%endif
<td>${job[0]}</td>
<td><a href="${h.url_for( controller='jobs', action='tool_for_month', id=tool_id, month=job[0] )}">${job[1]}</a></td>
</tr>
<% ctr += 1 %>
%endfor
%endif
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_user_for_month.mako
+87
View File
@@ -0,0 +1,87 @@
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">Jobs for user ${email} during ${month}</h3>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
%if len( jobs ) == 0:
<tr class="header"><td colspan="5">There are no jobs for ${email} during ${month}</td></tr>
%else:
%for job in jobs:
<%
state = job[0]
if state == 'new':
rowdef = '<tr class="headernew">'
elif state == 'queued':
rowdef = '<tr class="headerqueued">'
elif state == 'running':
rowdef = '<tr class="headerrunning">'
elif state == 'error':
rowdef = '<tr class="headererror">'
elif state == 'ok':
rowdef = '<tr class="headerok">'
%>
${rowdef}
<td>State</td>
<td>Job Id</td>
<td>Create Time</td>
<td>Update Time</td>
<td>Session Id</td>
</tr>
<tr>
<td>${job[0]}</td>
<td>${job[1]}</td>
<td>${job[2]}</td>
<td>${job[3]}</td>
<td>${job[4]}</td>
</tr>
<tr class="header">
<td colspan="3">Tool</td>
<td colspan="2">User</td>
</tr>
<tr>
<td colspan="3">${job[5]}</td>
<td colspan="2">${job[6]}</td>
</tr>
<tr class="header">
<td colspan="5">Remote Host</td>
</tr>
<tr>
<td colspan="5">${job[7]}</td>
</tr>
<tr class="header">
<td colspan="5">Command Line</td>
</tr>
<tr>
<td colspan="5">${job[8]}</td>
</tr>
<tr class="header">
<td colspan="5">Stderr</td>
</tr>
<tr>
<td colspan="5">${job[9]}</td>
</tr>
<tr class="header">
<td colspan="5">Stack Trace</td>
</tr>
<tr>
<td colspan="5">${job[10]}</td>
</tr>
<tr class="header">
<td colspan="5">Info</td>
</tr>
<tr>
<td colspan="5">${job[11]}</td>
</tr>
<tr><td colspan="5">&nbsp;</td></tr>
<tr><td colspan="5">&nbsp;</td></tr>
%endfor
%endif
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/jobs_user_per_month.mako
+35
View File
@@ -0,0 +1,35 @@
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<div class="reportBody">
<h3 align="center">Jobs per month for user ${email}</h3>
<h4 align="center">Click Total Jobs to see the user's jobs for that month</h4>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<table align="center" width="60%" class="colored">
%if len( jobs ) == 0:
<tr class="header"><td colspan="5">There are no jobs</td></tr>
%else:
<tr class="header">
<td>Year-Month</td>
<td>Total Jobs</td>
</tr>
<% ctr = 0 %>
%for job in jobs:
%if ctr % 2 == 1:
<tr class="odd_row">
%else:
<tr class="tr">
%endif
<td>${job[0]}</td>
<td><a href="${h.url_for( controller='jobs', action='user_for_month', id=email, month=job[0] )}">${job[1]}</a></td>
</tr>
<% ctr += 1 %>
%endfor
%endif
</table>
</div>
</%def>
lib/galaxy/webapps/reports/templates/main_frame.mako
-21
View File
@@ -1,21 +0,0 @@
<%inherit file="/base.mako"/>
<html>
<head>
<title>Galaxy Reports</title>
<link href="${h.url_for('/static/style/base.css')}" rel="stylesheet" type="text/css" />
</head>
<body>
<div class="body">
<h3 align="center">Galaxy Reports</h3>
<table align="center" width="40%" class="colored">
<tr><td><div class="reportTitle">Job Information</div></td></tr>
<tr><td><div class="reportBody"><a href="${h.url_for( controller='jobs', action='index' )}">Current Month</a></div></td></tr>
</table>
<br clear="left"/><br/><br/><br/>
<table align="center" width="40%" class="colored">
<tr><td><div class="reportTitle">System Information</div></td></tr>
<tr><td><div class="reportBody"><a href="${h.url_for( controller='system', action='index' )}">Disk space, old histories and datasets</a></div></td></tr>
</table>
</div>
</body>
</html>
lib/galaxy/webapps/reports/templates/masthead.mako
+1 -3
View File
@@ -6,7 +6,6 @@
<link href="${h.url_for('/static/style/base.css')}" rel="stylesheet" type="text/css" />
<link href="${h.url_for('/static/style/masthead.css')}" rel="stylesheet" type="text/css" />
</head>
<body class="mastheadPage">
<table width="100%" cellspacing="0" border="0">
<tr valign="middle">
@@ -21,11 +20,10 @@
| <a target="_blank" href="${screencasts_url}">screencasts</a>
| <a target="_blank" href="${blog_url}">blog</a>
&nbsp;&nbsp;&nbsp;
<a target="main_frame" href="${h.url_for( controller='root', action='main_frame' )}">Galaxy Reports Home</a>
<a target="_top" href="${h.url_for( controller='root', action='index' )}">Galaxy Reports Home</a>
&nbsp;
</td>
</tr>
</table>
</body>
</html>
lib/galaxy/webapps/reports/templates/system.mako
+77 -87
View File
@@ -1,92 +1,82 @@
<%inherit file="/base.mako"/>
<html>
<head>
<title>Galaxy System Management</title>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
<link href="${h.url_for('/static/style/base.css')}" rel="stylesheet" type="text/css" />
</head>
<body>
<h3 align="center">Old Histories and Datasets</h3>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
%endif
<%inherit file="/base_panels.mako"/>
<%def name="main_body()">
<h3 align="center">Old Histories and Datasets</h3>
%if msg:
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr>
<td>
<form method="post" action="system">
<p>
<button name="action" value="userless_histories">Number of Histories</button>
that are not associate with a user and were last updated more than
<input type="textfield" value="${userless_histories_days}" size="3" name="userless_histories_days">
days ago.
</p>
<p>
<button name="action" value="deleted_histories">Number of Histories</button>
that were deleted more than
<input type="textfield" value="${deleted_histories_days}" size="3" name="deleted_histories_days">
days ago but have not yet been purged.
</p>
<p>
<button name="action" value="deleted_datasets">Number of Datasets</button>
that were deleted more than
<input type="textfield" value="${deleted_datasets_days}" size="3" name="deleted_datasets_days">
days ago but have not yet been purged.
</p>
</form>
</td>
</tr>
<tr><td class="ok_bgr">${msg}</td></tr>
</table>
<br clear="left" /><br />
<h3 align="center">Current Disk Space Where Datasets are Stored</h3>
<table align="center" width="60%" class="colored">
<tr><td colspan="5"><div class="reportTitle">Disk Usage for ${file_path}</div></td></tr>
%endif
<table align="center" width="70%" class="border" cellpadding="5" cellspacing="5">
<tr>
<td>
<form method="post" action="system">
<p>
<button name="action" value="userless_histories">Number of Histories</button>
that are not associate with a user and were last updated more than
<input type="textfield" value="${userless_histories_days}" size="3" name="userless_histories_days">
days ago.
</p>
<p>
<button name="action" value="deleted_histories">Number of Histories</button>
that were deleted more than
<input type="textfield" value="${deleted_histories_days}" size="3" name="deleted_histories_days">
days ago but have not yet been purged.
</p>
<p>
<button name="action" value="deleted_datasets">Number of Datasets</button>
that were deleted more than
<input type="textfield" value="${deleted_datasets_days}" size="3" name="deleted_datasets_days">
days ago but have not yet been purged.
</p>
</form>
</td>
</tr>
</table>
<br clear="left" /><br />
<h3 align="center">Current Disk Space Where Datasets are Stored</h3>
<table align="center" width="60%" class="colored">
<tr><td colspan="5"><div class="reportTitle">Disk Usage for ${file_path}</div></td></tr>
<tr class="header">
<td>File System</td>
<td>Disk Size</td>
<td>Used</td>
<td>Available</td>
<td>Percent Used</td>
</tr>
<tr class="tr">
<td>${disk_usage[0]}</td>
<td>${disk_usage[1]}</td>
<td>${disk_usage[2]}</td>
<td>${disk_usage[3]}</td>
<td>${disk_usage[4]}</td>
</tr>
%if len( datasets ) == 0:
<tr class="header"><td colspan="5">There are no datasets larger than ${file_size_str}</td></tr>
%else:
<tr><td colspan="5"><div class="reportTitle">${len( datasets )} largest datasets over ${file_size_str}</div></td></tr>
<tr class="header">
<td>File System</td>
<td>Disk Size</td>
<td>Used</td>
<td>Available</td>
<td>Percent Used</td>
<td>File</td>
<td>Last Updated</td>
<td>History ID</td>
<td>Deleted</td>
<td>Size on Disk</td>
</tr>
<tr class="tr">
<td>${disk_usage[0]}</td>
<td>${disk_usage[1]}</td>
<td>${disk_usage[2]}</td>
<td>${disk_usage[3]}</td>
<td>${disk_usage[4]}</td>
</tr>
%if len( datasets ) == 0:
<tr class="header"><td colspan="5">There are no datasets larger than ${file_size_str}</td></tr>
%else:
<tr><td colspan="5"><div class="reportTitle">${len( datasets )} largest datasets over ${file_size_str}</div></td></tr>
<tr class="header">
<td>File</td>
<td>Last Updated</td>
<td>History ID</td>
<td>Deleted</td>
<td>Size on Disk</td>
<% ctr = 0 %>
%for dataset in datasets:
%if ctr % 2 == 1:
<tr class="odd_row">
%else:
<tr class="tr">
%endif
<td>dataset_${dataset[0]}.dat</td>
<td>${dataset[1]}</td>
<td>${dataset[2]}</td>
<td>${dataset[3]}</td>
<td>${dataset[4]}</td>
</tr>
<%
ctr = 0
%>
%for dataset in datasets:
%if len( datasets ) > 2 and ctr % 2 == 1:
<tr class="odd_row">
%else:
<tr class="tr">
%endif
<td>dataset_${dataset[0]}.dat</td>
<td>${dataset[1]}</td>
<td>${dataset[2]}</td>
<td>${dataset[3]}</td>
<td>${dataset[4]}</td>
</tr>
<%
ctr += 1
%>
%endfor
%endif
</table>
</body>
</html>
<% ctr += 1 %>
%endfor
%endif
</table>
</%def>