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Turn of sanitizer for in __SET_METADATA__ autodetect metadata tool. Fixes issue that appears as a result of PR #474, but also could occur under corner-cases with interestlying named temp filenames. Also, add quotes around configfile filename.

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Daniel Blankenberg
2015-07-17 16:31:56 -04:00
parent 4d0a9a85b1
commit 807dd81fef
1 changed files with 4 additions and 2 deletions
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lib/galaxy/datatypes/registry.py
+4 -2
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@@ -645,11 +645,13 @@ class Registry( object ):
<requirement type="package">samtools</requirement>
</requirements>
<action module="galaxy.tools.actions.metadata" class="SetMetadataToolAction"/>
<command>python $set_metadata $__SET_EXTERNAL_METADATA_COMMAND_LINE__</command>
<command>python "${set_metadata}" ${__SET_EXTERNAL_METADATA_COMMAND_LINE__}</command>
<inputs>
<param format="data" name="input1" type="data" label="File to set metadata on."/>
<param name="__ORIGINAL_DATASET_STATE__" type="hidden" value=""/>
<param name="__SET_EXTERNAL_METADATA_COMMAND_LINE__" type="hidden" value=""/>
<param name="__SET_EXTERNAL_METADATA_COMMAND_LINE__" type="hidden" value="">
<sanitizer sanitize="False"/>
</param>
</inputs>
<configfiles>
<configfile name="set_metadata">from galaxy_ext.metadata.set_metadata import set_metadata; set_metadata()</configfile>