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Updates for GenomeSpace file browser importer.

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This commit is contained in:
Daniel Blankenberg
2011-11-21 17:12:07 -05:00
parent c1dd3d3eaa
commit 7cf9b6daea
3 changed files with 33 additions and 1 deletions
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tool_conf.xml.sample
+3 -1
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@@ -26,7 +26,9 @@
<tool file="data_source/epigraph_import.xml" />
<tool file="data_source/epigraph_import_test.xml" />
<tool file="data_source/hbvar.xml" />
<tool file="data_source/genomespace_file_browser_dev.xml" />
<tool file="data_source/genomespace_file_browser_prod.xml" />
<!-- <tool file="data_source/genomespace_file_browser_test.xml" />
<tool file="data_source/genomespace_file_browser_dev.xml" /> -->
<tool file="validation/fix_errors.xml" />
</section>
<section name="Send Data" id="send">
tools/data_source/genomespace_file_browser_prod.xml
+15
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@@ -0,0 +1,15 @@
<?xml version="1.0"?>
<tool name="GenomeSpace import" id="genomespace_file_browser_prod" tool_type="data_source" add_galaxy_url="False" force_history_refresh="True" version="0.0.1">
<description>from file browser</description>
<command interpreter="python">genomespace_file_browser.py --json_parameter_file "${output}" --genomespace_site "prod"</command>
<inputs action="https://dm.genomespace.org/datamanager/defaultdirectory" check_values="False" method="post">
<display>go to GenomeSpace Data Manager </display>
<param name="appCallbackUrl" type="baseurl" value="/tool_runner?tool_id=genomespace_file_browser_dev&amp;runtool_btn=Execute" />
<param name="appName" type="hidden" value="Galaxy" />
</inputs>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="auto" />
</outputs>
<options sanitize="False" refresh="True"/>
</tool>
tools/data_source/genomespace_file_browser_test.xml
+15
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@@ -0,0 +1,15 @@
<?xml version="1.0"?>
<tool name="GenomeSpace import" id="genomespace_file_browser_test" tool_type="data_source" add_galaxy_url="False" force_history_refresh="True" version="0.0.1">
<description>from file browser (test)</description>
<command interpreter="python">genomespace_file_browser.py --json_parameter_file "${output}" --genomespace_site "test"</command>
<inputs action="https://dmtest.genomespace.org:8444/datamanager/defaultdirectory" check_values="False" method="post">
<display>go to GenomeSpace Data Manager </display>
<param name="appCallbackUrl" type="baseurl" value="/tool_runner?tool_id=genomespace_file_browser_dev&amp;runtool_btn=Execute" />
<param name="appName" type="hidden" value="Galaxy" />
</inputs>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="auto" />
</outputs>
<options sanitize="False" refresh="True"/>
</tool>