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include RN in index and add minor changes to them
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@@ -28,17 +28,17 @@ Enhancements
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`Pull Request 9471`_
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* Make Toolshed Python 3 compatible & tests
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`Pull Request 9528`_
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* It migrate from EU
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* Migrate interactive tools from EU server
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(thanks to `@astrovsky01 <https://github.com/astrovsky01>`__).
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`Pull Request 9559`_
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* Allow Tool Data Tables to be backed by refgenie.
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* Allow Tool Data Tables to be backed by refgenie
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`Pull Request 9600`_
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* Startup speedups (XML doc cache, delay non-essential tool param parsing & indexing)
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`Pull Request 9610`_
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.. feature
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* Enable admin resend activation email
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* Enable admin to resend activation email
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`Pull Request 9154`_
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* Create Python3 virtualenv by default
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(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
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@@ -49,6 +49,9 @@ Enhancements
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* Tool recommendation
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(thanks to `@anuprulez <https://github.com/anuprulez>`__).
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`Pull Request 9440`_
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* Tool recommendations in workflow editor
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(thanks to `@anuprulez <https://github.com/anuprulez>`__).
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`Pull Request 9569`_
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* Added whitelisting option for user registration
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(thanks to `@MiguelJulia <https://github.com/MiguelJulia>`__).
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`Pull Request 9501`_
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@@ -58,9 +61,6 @@ Enhancements
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* Chira visualization for Chimeras
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(thanks to `@OlegZharkov <https://github.com/OlegZharkov>`__).
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`Pull Request 9562`_
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* Tool recommendations in workflow editor
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(thanks to `@anuprulez <https://github.com/anuprulez>`__).
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`Pull Request 9569`_
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* Datasource tool for SRA manifest
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`Pull Request 9613`_
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.. enhancement_tag_viz
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@@ -153,7 +153,7 @@ Enhancements
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`Pull Request 9060`_
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* Disable the admin_toolshed controller (except for tests).
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`Pull Request 9072`_
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* Fontawesome5
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* Upgrade to Fontawesome 5
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`Pull Request 9101`_
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* Add a test for a tool with `from_working_dir`, `outputs_to_working_directory` and `pulsar`
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(thanks to `@bgruening <https://github.com/bgruening>`__).
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@@ -9,7 +9,7 @@ Highlights
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===========================================================
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**Many new Interactive Tools**
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Galaxy interactive tools allow a greater depth of analysis via access to GUI-based tools inside an instance. 10 new interactive tools (some previously available only on the UseGalaxy.eu server) join the standard base toolset. Improvements to the Higlass interactive tool also now allow for a more in-depth visualization of multiple datasets in various formats simultaneously (`Pull Request 9559`_).
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Galaxy interactive tools allow a greater depth of analysis via access to GUI-based tools inside an instance. 10 new interactive tools (some previously available only on the UseGalaxy.eu server) join the standard base toolset. Improvements to the Higlass interactive tool now also allow for a more in-depth visualization of multiple datasets in various formats simultaneously (`Pull Request 9559`_).
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**Data Tables can now be backed by refgenie**
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`Refgenie <http://refgenie.databio.org/>`__ manages storage, access, and transfer of reference genome resources. Galaxy can now fill data tables that were received from a refgenie installation (`Pull Request 9600`_).
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@@ -18,7 +18,7 @@ Galaxy interactive tools allow a greater depth of analysis via access to GUI-bas
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As the last component in the Galaxy Codebase the Tool Shed has been ported to Python 3. This concludes a 4 year effort to port the Galaxy codebase to Python 3 (`Pull Request 9528`_).
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**Workflow Editor and Workflow Run Form in Vue.js**
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The Workflow Editor and Workflow Run Form have been re-written in Vue.js. While the functionality has been conserved this lays the groundwork for creating beautiful and reactive custom variants of these components in the future (`Pull Request 9346`_, `Pull Request 9332`_, `Pull Request 9324`_, `Pull Request 9249`_, `Pull Request 9201`_, `Pull Request 9147`_, `Pull Request 9138`_, `Pull Request 9574`_).
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The Workflow Editor and Workflow Run Form have been re-written in Vue.js. While the functionality has been preserved this lays the groundwork for creating beautiful and reactive custom variants of these components in the future (`Pull Request 9346`_, `Pull Request 9332`_, `Pull Request 9324`_, `Pull Request 9249`_, `Pull Request 9201`_, `Pull Request 9147`_, `Pull Request 9138`_, `Pull Request 9574`_).
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**Accelerated Galaxy Startup**
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Galaxy now caches expanded tool documents, delays creating the tool search index until after startup and creates search indexes incrementally (`Pull Request 9610`_).
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@@ -22,7 +22,7 @@ Highlights
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:alt: Tool prediction shown in the workflow interface
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**Rule Based Uploader: Scrolling!**
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Many power users have fallen in love with Galaxy's Rule Builder, allowing you to upload tables of data, and easily tag datasets and build collections on upload. However with too many columns the table did not scroll well for users, but no longer! This has been fixed by one of the Galaxy team members, `@assuntad23 <https://github.com/assuntad23>`__. If you want to learn more about using the rule builder please see the `in-depth tutorial <https://training.galaxyproject.org/training-material/topics/galaxy-data-manipulation/tutorials/upload-rules/tutorial.html>`__ from the deverloper, `@jmchilton <https://github.com/jmchilton>`__.
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Many power users have fallen in love with Galaxy's Rule Builder, allowing you to upload tables of data, and easily tag datasets and build collections on upload. However with too many columns the table did not scroll well for users, but no longer! This has been fixed by one of the Galaxy team members, `@assuntad23 <https://github.com/assuntad23>`__. If you want to learn more about using the rule builder please see the `in-depth tutorial <https://training.galaxyproject.org/training-material/topics/galaxy-data-manipulation/tutorials/upload-rules/tutorial.html>`__ from the developer, `@jmchilton <https://github.com/jmchilton>`__.
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.. figure:: images/20.05-rule-based.gif
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:alt: Scrolling works again
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@@ -4,6 +4,7 @@ Releases
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.. toctree::
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:maxdepth: 1
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20.05_announce
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20.01_announce
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19.09_announce
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19.05_announce
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