mirror of
https://github.com/galaxyproject/galaxy.git
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Fixing PR review comments
This commit is contained in:
anuprulez
@@ -11,7 +11,9 @@ var jQuery = require( 'jquery' ),
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Tours = require( 'mvc/tours' ),
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GridView = require( 'mvc/grid/grid-view' )
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Workflows = require( 'mvc/workflow/workflow' ),
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WorkflowsConfigureMenu = require( 'mvc/workflow/workflow-configure-menu' );
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WorkflowsConfigureMenu = require( 'mvc/workflow/workflow-configure-menu' ),
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ToolFormComposite = require( 'mvc/tool/tool-form-composite' ),
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Utils = require( 'utils/utils' );
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/** define the 'Analyze Data'/analysis/main/home page for Galaxy
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* * has a masthead
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@@ -128,11 +130,11 @@ window.app = function app( options, bootstrapped ){
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},
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show_run : function() {
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this.page.display( new Workflows.Run_Workflow_View() );
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this._loadWorkflow();
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},
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show_import_workflow : function() {
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this.page.display( new Workflows.Import_Workflow_View() );
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this.page.display( new Workflows.ImportWorkflowView() );
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},
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show_configure_menu : function(){
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@@ -163,7 +165,7 @@ window.app = function app( options, bootstrapped ){
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} else {
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// show the workflow run form
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if( params.workflow_id ){
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this.page.display( new Workflows.Run_Workflow_View() )
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this._loadWorkflow();
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// load the center iframe with controller.action: galaxy.org/?m_c=history&m_a=list -> history/list
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} else if( params.m_c ){
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this._loadCenterIframe( params.m_c + '/' + params.m_a );
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@@ -188,6 +190,23 @@ window.app = function app( options, bootstrapped ){
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this.page.$( '#galaxy_main' ).prop( 'src', url );
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},
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/** load workflow by its url in run mode */
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_loadWorkflow: function() {
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var self = this;
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self.page.$( '#galaxy-main' ).hide();
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self.page.$( "#center-panel" ).show();
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Utils.get({
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url : Galaxy.root + 'workflow/run_workflow?id=' + Utils.getQueryString( 'id' ),
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success : function( response ) {
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var form = new ToolFormComposite.View( response );
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self.page.$( "#center-panel" ).empty().append( form.$el )
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},
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error : function( response ) {
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var $el_error = "<div class='response-message errormessage'><p>Error occurred while loading the resource.</p></div>";
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self.page.$( "#center-panel" ).empty().append( $el_error );
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}
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});
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}
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});
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// render and start the router
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@@ -61,24 +61,8 @@ var ToolPanel = Backbone.View.extend({
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_.each( this.stored_workflow_menu_entries, function( menu_entry ){
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self.$( '#internal-workflows' ).append( self._templateWorkflowLink({
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title : menu_entry.stored_workflow.name,
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href : 'workflow/run?id=' + menu_entry.encoded_stored_workflow_id,
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cls : 'workflow-menu-' + menu_entry.encoded_stored_workflow_id
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href : 'workflow/run?id=' + menu_entry.encoded_stored_workflow_id
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}));
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self._registerWorkflowMenuClick( self, menu_entry.encoded_stored_workflow_id );
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});
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},
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/** Open the items in workflow menu in the center panel */
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_registerWorkflowMenuClick: function( self, workflow_id ) {
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$( '.workflow-menu-' + workflow_id ).click(function( e ) {
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var url = Galaxy.root + 'workflow/run_workflow?id=' + workflow_id;
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$.getJSON(url, function( response ) {
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var wf_parsed = JSON.parse( JSON.stringify( response ) );
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var form = new ToolForm.View( wf_parsed[0] );
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$( '#galaxy_main' ).hide();
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$( "#center-panel" ).show();
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$( "#center-panel" ).empty().append( form.$el );
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});
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});
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},
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@@ -1,16 +1,11 @@
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/** Workflow view */
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define( [ 'mvc/tool/tool-form-composite' ], function( ToolForm ) {
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/** Get querystrings from url */
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function get_querystring( key ) {
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return decodeURIComponent( window.location.search.replace(new RegExp("^(?:.*[&\\?]" + encodeURIComponent( key ).replace(/[\.\+\*]/g, "\\$&") + "(?:\\=([^&]*))?)?.*$", "i"), "$1") );
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}
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define( [ 'utils/utils' ], function( Utils ) {
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/** Build messages after user action */
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function build_messages( self ) {
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var $el_message = self.$el.find( '.response-message' ),
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status = get_querystring( 'status' ),
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message = get_querystring( 'message' );
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status = Utils.getQueryString( 'status' ),
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message = Utils.getQueryString( 'message' );
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if( message && message !== null && message !== "" ) {
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$el_message.addClass( status + 'message' );
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@@ -186,28 +181,7 @@ define( [ 'mvc/tool/tool-form-composite' ], function( ToolForm ) {
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}
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});
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var Run_Workflow_View = Backbone.View.extend({
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initialize: function( options ) {
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this.setElement( '<div/>' );
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this.run_workflow( options );
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},
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/** Open workflow to run */
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run_workflow: function() {
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var self = this,
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id = get_querystring( 'id' ),
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url = Galaxy.root + 'workflow/run_workflow?id=' + id;
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$.getJSON(url, function( response ) {
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var wf_parsed = JSON.parse( JSON.stringify( response ) );
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var form = new ToolForm.View( wf_parsed[0] );
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build_messages( self );
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self.$el.empty().append( form.$el );
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});
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}
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});
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var Import_Workflow_View = Backbone.View.extend({
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var ImportWorkflowView = Backbone.View.extend({
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initialize: function() {
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this.setElement( '<div/>' );
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@@ -269,7 +243,6 @@ define( [ 'mvc/tool/tool-form-composite' ], function( ToolForm ) {
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return {
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View : View,
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Run_Workflow_View : Run_Workflow_View,
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Import_Workflow_View : Import_Workflow_View
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ImportWorkflowView : ImportWorkflowView
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};
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});
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@@ -277,6 +277,11 @@ define( [], function() {
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+ minutes;
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};
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/** Get querystrings from url */
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function getQueryString( key ) {
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return decodeURIComponent( window.location.search.replace(new RegExp("^(?:.*[&\\?]" + encodeURIComponent( key ).replace(/[\.\+\*]/g, "\\$&") + "(?:\\=([^&]*))?)?.*$", "i"), "$1") );
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};
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return {
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cssLoadFile: cssLoadFile,
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cssGetAttribute: cssGetAttribute,
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@@ -293,6 +298,7 @@ define( [], function() {
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deepeach: deepeach,
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isJSON: isJSON,
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clone: clone,
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linkify: linkify
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linkify: linkify,
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getQueryString: getQueryString
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};
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});
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});
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@@ -740,6 +740,7 @@ class WorkflowController( BaseUIController, SharableMixin, UsesStoredWorkflowMix
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return stored_dict
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@web.expose
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@web.json
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def upload_import_workflow( self, trans, cntrller='workflow', **kwd ):
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"""
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Import a workflow by reading an url, uploading a file, opening and reading the contents
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@@ -908,12 +909,12 @@ class WorkflowController( BaseUIController, SharableMixin, UsesStoredWorkflowMix
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redirect_url = url_for( '/' ) + 'workflow?status=' + status + '&message=%s' % escape( message )
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return trans.response.send_redirect( redirect_url )
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else:
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return json.dumps({
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return {
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'url' : url,
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'message' : message,
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'status' : status,
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'myexperiment_target_url' : myexperiment_target_url
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})
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}
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@web.expose
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def build_from_current_history( self, trans, job_ids=None, dataset_ids=None, dataset_collection_ids=None, workflow_name=None, dataset_names=None, dataset_collection_names=None ):
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@@ -953,6 +954,7 @@ class WorkflowController( BaseUIController, SharableMixin, UsesStoredWorkflowMix
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url_for( controller='workflow', action='run', id=workflow_id ) ) )
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@web.expose
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@web.json
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def run_workflow( self, trans, id, history_id=None, **kwargs ):
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history = None
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try:
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@@ -970,9 +972,7 @@ class WorkflowController( BaseUIController, SharableMixin, UsesStoredWorkflowMix
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workflow_contents_manager = workflows.WorkflowContentsManager( trans.app )
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stored = workflow_manager.get_stored_accessible_workflow( trans, id )
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workflow_dict = workflow_contents_manager.workflow_to_dict( trans, stored, style='run' )
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wf_dict = list()
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wf_dict.append( workflow_dict )
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return json.dumps( wf_dict )
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return workflow_dict
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def get_item( self, trans, id ):
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return self.get_stored_workflow( trans, id )
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@@ -1 +1 @@
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Reference in New Issue
Block a user