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Merge pull request #12112 from mvdbeek/sigpipe_fix_show_beginning_1

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[21.05] Ignore sigpipe in ``Show beginning1`` tool
This commit is contained in:
M Bernt
2021-06-09 15:10:48 +02:00
committed by GitHub
parent b4bbffe0bd 326e4c9c63
commit 77ef96a62a
1 changed files with 14 additions and 1 deletions
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tools/filters/headWrapper.xml
+14 -1
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@@ -6,7 +6,11 @@
<requirements>
<requirement type="package" version="8.31">coreutils</requirement>
</requirements>
<command detect_errors="exit_code"><![CDATA[
<stdio>
<exit_code range="1:140"/>
<exit_code range="142:"/>
</stdio>
<command><![CDATA[
set -eo pipefail;
#if $header
head -n 1 '$input' > '$out_file1' &&
@@ -36,6 +40,15 @@
</assert_contents>
</output>
</test>
<test>
<param name="lineNum" value="1"/>
<param name="input" value="GRCm38mm10_chr5_34761740-34912521.fa"/>
<output name="out_file1">
<assert_contents>
<has_n_lines n="1"/>
</assert_contents>
</output>
</test>
<test>
<param name="lineNum" value="10"/>
<param name="input" value="1.bed"/>