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Update text.py Add interaction annotations to SnpEffDb metadata

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Interaction annotations are now included in SnpEff v4.3
This commit is contained in:
Jim Johnson
2017-04-17 10:12:14 -05:00
committed by GitHub
parent 695293f015
commit 77caed9861
1 changed files with 1 additions and 1 deletions
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lib/galaxy/datatypes/text.py
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@@ -424,7 +424,7 @@ class SnpEffDb( Text ):
# search data_dir/genome_version for files
regulation_pattern = 'regulation_(.+).bin'
# annotation files that are included in snpEff by a flag
annotations_dict = {'nextProt.bin': '-nextprot', 'motif.bin': '-motif'}
annotations_dict = {'nextProt.bin': '-nextprot', 'motif.bin': '-motif', 'interactions.bin': '-interaction'}
regulations = []
annotations = []
genome_version = None