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small correction

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This commit is contained in:
Jianbin He
2007-06-29 18:50:53 +00:00
parent 751bdb721d
commit 75642cd3d4
1 changed files with 11 additions and 11 deletions
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tools/patmat/findcluster_mysql_subs.py
+11 -11
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@@ -313,17 +313,17 @@ def scan_chromosome(genome_name, chrom_name, patterns, combines, patterns_name,
#--------print bed file header---------
out_file.write("#1. chrom")
out_file.write("#2. chromStart.Note:The first base in a chromosome is numbered 0.")
out_file.write("#3. chromEnd")
out_file.write("#4. Pattern order. E.g. BABCBD, each letter represents one pattern.")
out_file.write("#5. score. If the track line useScore attribute is set to 1 for this annotation data set, the score value will determine the level of gray.")
out_file.write("#6. strand")
out_file.write("#7. thickStart. The starting position at which the feature is drawn thickly.")
out_file.write("#8. thickEnd. The ending position at which the feature is drawn thickly.")
out_file.write("#9. itemRgb. An RGB value of the form R,G,B (e.g. 255,0,0). If the track line itemRgb attribute is set to 'On', this RBG value will determine the display color. ")
out_file.write("#10. blockCount. The number of blocks (exons) in the BED line.")
out_file.write("#11. blockSizes. A comma-separated list of the block sizes. ")
out_file.write("#12. blockStarts. A comma-separated list of block starts.")
out_file.write("\n#2. chromStart.Note:The first base in a chromosome is numbered 0.")
out_file.write("\n#3. chromEnd")
out_file.write("\n#4. Pattern order. E.g. BABCBD, each letter represents one pattern.")
out_file.write("\n#5. score. If the track line useScore attribute is set to 1 for this annotation data set, the score value will determine the level of gray.")
out_file.write("\n#6. strand")
out_file.write("\n#7. thickStart. The starting position at which the feature is drawn thickly.")
out_file.write("\n#8. thickEnd. The ending position at which the feature is drawn thickly.")
out_file.write("\n#9. itemRgb. An RGB value of the form R,G,B (e.g. 255,0,0). If the track line itemRgb attribute is set to 'On', this RBG value will determine the display color. ")
out_file.write("\n#10. blockCount. The number of blocks (exons) in the BED line.")
out_file.write("\n#11. blockSizes. A comma-separated list of the block sizes. ")
out_file.write("\n#12. blockStarts. A comma-separated list of block starts.\n")
kk = 0
while kk < nclusters: