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Merge pull request #2788 from dannon/backport_condainstall

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[16.04] Conda explicitly checks for .sh in the command as a part of it's logi…
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Björn Grüning
2016-08-16 20:41:49 +02:00
committed by GitHub
parent ceeef39edb 43320aa8d1
commit 752df7f82b
1 changed files with 1 additions and 1 deletions
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lib/galaxy/tools/deps/conda_util.py
+1 -1
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@@ -260,7 +260,7 @@ def hash_conda_packages(conda_packages, conda_target=None):
# these commands as Python
def install_conda(conda_context=None):
conda_context = _ensure_conda_context(conda_context)
f, script_path = tempfile.mkstemp(suffix=".bash", prefix="conda_install")
f, script_path = tempfile.mkstemp(suffix=".sh", prefix="conda_install")
os.close(f)
download_cmd = " ".join(commands.download_command(conda_link(), to=script_path, quote_url=True))
install_cmd = "bash '%s' -b -p '%s'" % (script_path, conda_context.conda_prefix)