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Reworked tool config for CTD tool due to potential bug in galaxy command line generation

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This commit is contained in:
Richard Burhans
2010-09-20 15:32:20 -04:00
parent 0c1f60ce78
commit 752c889dfa
1 changed files with 5 additions and 3 deletions
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tools/human_genome_variation/ctd.xml
+5 -3
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@@ -2,13 +2,15 @@
<description>analysis of chemicals, diseases, or genes</description>
<command interpreter="perl">
ctd.pl $input $numerical_column $inType.inputType
#if $inType.inputType == "disease"
ctd.pl $input $numerical_column $inType.inputType $inType.report ANY $out_file1
$inType.report ANY
#else if $inType.reportType.report == "cgixns"
ctd.pl $input $numerical_column $inType.inputType $inType.reportType.report $inType.reportType.actType $out_file1
$inType.reportType.report $inType.reportType.actType
#else
ctd.pl $input $numerical_column $inType.inputType $inType.reportType.report ANY $out_file1
$inType.reportType.report ANY
#end if
$out_file1
</command>
<inputs>