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Use cluster_files_directory for drmaa job template.

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Nate Coraor
2012-02-03 12:22:16 -05:00
parent 932da916c0
commit 74c2b69251
1 changed files with 1 additions and 1 deletions
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lib/galaxy/jobs/runners/drmaa.py
+1 -1
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@@ -169,7 +169,7 @@ class DRMAAJobRunner( BaseJobRunner ):
ofile = "%s.drmout" % os.path.join(os.getcwd(), job_wrapper.working_directory, job_wrapper.get_id_tag())
efile = "%s.drmerr" % os.path.join(os.getcwd(), job_wrapper.working_directory, job_wrapper.get_id_tag())
jt = self.ds.createJobTemplate()
jt.remoteCommand = "%s/database/pbs/galaxy_%s.sh" % (os.getcwd(), job_wrapper.get_id_tag())
jt.remoteCommand = "%s/galaxy_%s.sh" % (self.app.config.cluster_files_directory, job_wrapper.get_id_tag())
jt.outputPath = ":%s" % ofile
jt.errorPath = ":%s" % efile
native_spec = self.get_native_spec( runner_url )