Merge pull request #6903 from phnmnl/feature/nmrml_data_type

nmrML data type.

config/datatypes_conf.xml.sample

@@ -214,6 +214,7 @@
     <datatype extension="tandem" type="galaxy.datatypes.proteomics:TandemXML" mimetype="application/xml" display_in_upload="true"/>
     <datatype extension="thermo.raw" type="galaxy.datatypes.proteomics:ThermoRAW" mimetype="application/octet-stream" display_in_upload="true"/>
     <datatype extension="mzml" type="galaxy.datatypes.proteomics:MzML" mimetype="application/xml" display_in_upload="true"/>
+    <datatype extension="nmrml" type="galaxy.datatypes.proteomics:NmrML" mimetype="application/xml" display_in_upload="true" description="nmrML is an open mark-up language for NMR data." description_url="http://nmrml.org/schema/"/>
     <datatype extension="mgf" type="galaxy.datatypes.proteomics:Mgf" display_in_upload="true"/>
     <datatype extension="wiff" type="galaxy.datatypes.proteomics:Wiff" display_in_upload="true"/>
     <datatype extension="mzxml" type="galaxy.datatypes.proteomics:MzXML" mimetype="application/xml" display_in_upload="true"/>
@@ -752,6 +753,7 @@
     <sniffer type="galaxy.datatypes.xml:Owl"/>
     <sniffer type="galaxy.datatypes.xml:Sbml"/>
     <sniffer type="galaxy.datatypes.proteomics:MzML"/>
+    <sniffer type="galaxy.datatypes.proteomics:NmrML"/>
     <sniffer type="galaxy.datatypes.proteomics:TandemXML"/>
     <sniffer type="galaxy.datatypes.proteomics:PepXml"/>
     <sniffer type="galaxy.datatypes.proteomics:Mgf"/>

lib/galaxy/datatypes/proteomics.py

@@ -135,6 +135,14 @@ class MzML(ProteomicsXml):
     root = "(mzML|indexedmzML)"
 
 
+class NmrML(ProteomicsXml):
+    """nmrML data"""
+    # No edam format number yet.
+    file_ext = "nmrml"
+    blurb = 'nmrML NMR data'
+    root = "nmrML"
+
+
 class ProtXML(ProteomicsXml):
     """protXML data"""
     file_ext = "protxml"