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(recommit): porocessTaxonomynow removes parenthesis fixing various tree drawing issues in metagenomic tools. Major rework of MG tools needed to ensure reproducibility

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Nate Coraor
2010-11-10 10:26:43 -05:00
parent 1e4fba1360
commit 6cf36abfcc
1 changed files with 4 additions and 0 deletions
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scripts/taxonomy/processTaxonomy.sh
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@@ -10,5 +10,9 @@ cat gi_taxid_nucl.dmp gi_taxid_prot.dmp > gi_taxid_all.dmp
echo "Sorting gi2tax files..."
sort -n -k 1 gi_taxid_all.dmp > gi_taxid_sorted.txt
rm gi_taxid_nucl.dmp gi_taxid_prot.dmp gi_taxid_all.dmp
echo "Removing parenthesis from names.dmp"
cat names.dmp | sed s/\(/_/g | sed s/\)/_/g > names.temporary
mv names.dmp names.dmp.orig
mv names.temporary names.dmp