diff --git a/scripts/taxonomy/processTaxonomy.sh b/scripts/taxonomy/processTaxonomy.sh index 95c6c973a69..3c82f45776c 100755 --- a/scripts/taxonomy/processTaxonomy.sh +++ b/scripts/taxonomy/processTaxonomy.sh @@ -10,5 +10,9 @@ cat gi_taxid_nucl.dmp gi_taxid_prot.dmp > gi_taxid_all.dmp echo "Sorting gi2tax files..." sort -n -k 1 gi_taxid_all.dmp > gi_taxid_sorted.txt rm gi_taxid_nucl.dmp gi_taxid_prot.dmp gi_taxid_all.dmp +echo "Removing parenthesis from names.dmp" +cat names.dmp | sed s/\(/_/g | sed s/\)/_/g > names.temporary +mv names.dmp names.dmp.orig +mv names.temporary names.dmp