mirror of
https://github.com/galaxyproject/galaxy.git
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Merge pull request #1422 from dannon/interactive_tours
Interactive Tours
This commit is contained in:
Björn Grüning
@@ -14,6 +14,7 @@
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"underscore": "~1.7.0",
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"backbone": "~1.1.2",
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"bootstrap": "~3.3.2",
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"bootstrap-tour":"~0.10.2",
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"d3": "~3.5.3",
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"farbtastic": "~2.0.0-alpha.1",
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"toastr": "~2.1.0",
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@@ -1,5 +1,5 @@
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/** Masthead Collection **/
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define([], function() {
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define(['mvc/tours'], function( Tours ) {
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var Collection = Backbone.Collection.extend({
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model: Backbone.Model.extend({
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defaults: {
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@@ -142,6 +142,12 @@ var Collection = Backbone.Collection.extend({
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title : 'How to Cite Galaxy',
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url : options.citation_url,
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target : '_blank'
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},{
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title : 'Interactive Tours',
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onclick : function(c){
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Galaxy.app.display(new Tours.ToursView());
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},
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target : 'galaxy_main'
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}]
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};
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options.terms_url && helpTab.menu.push({
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@@ -244,6 +250,7 @@ var Tab = Backbone.View.extend({
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this.$menu = this.$( '.dropdown-menu' );
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this.$note = this.$( '.dropdown-note' );
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this.model = options.model;
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this.$el.attr( 'id', this.model.id );
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this.model.on( 'init change:title', function() {
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this.get( 'title' ) && self.$toggle.html( this.get( 'title' ) );
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}).on( 'init change:visible', function() {
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@@ -7,6 +7,7 @@ return Backbone.View.extend({
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this.frames = new Frames.View({ visible : false });
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this.setElement( this.frames.$el );
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this.buttonActive = options.collection.add({
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id : 'enable-scratchbook',
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icon : 'fa-th',
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tooltip : 'Enable/Disable Scratchbook',
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onclick : function() {
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@@ -25,6 +26,7 @@ return Backbone.View.extend({
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}
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});
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this.buttonLoad = options.collection.add({
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id : 'show-scratchbook',
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icon : 'fa-eye',
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tooltip : 'Show/Hide Scratchbook',
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show_note : true,
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+802
@@ -0,0 +1,802 @@
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/* ========================================================================
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* bootstrap-tour - v0.10.1
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* http://bootstraptour.com
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* ========================================================================
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* Copyright 2012-2013 Ulrich Sossou
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*
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* ========================================================================
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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* ========================================================================
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*/
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(function($, window) {
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var Tour, document;
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document = window.document;
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Tour = (function() {
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function Tour(options) {
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var storage;
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try {
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storage = window.localStorage;
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} catch (_error) {
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storage = false;
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}
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this._options = $.extend({
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name: 'tour',
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steps: [],
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container: 'body',
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autoscroll: true,
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keyboard: true,
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storage: storage,
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debug: false,
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backdrop: false,
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backdropPadding: 0,
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redirect: true,
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orphan: false,
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duration: false,
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delay: false,
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basePath: '',
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template: '<div class="popover" role="tooltip"> <div class="arrow"></div> <h3 class="popover-title"></h3> <div class="popover-content"></div> <div class="popover-navigation"> <div class="btn-group"> <button class="btn btn-sm btn-default" data-role="prev">« Prev</button> <button class="btn btn-sm btn-default" data-role="next">Next »</button> <button class="btn btn-sm btn-default" data-role="pause-resume" data-pause-text="Pause" data-resume-text="Resume">Pause</button> </div> <button class="btn btn-sm btn-default" data-role="end">End tour</button> </div> </div>',
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afterSetState: function(key, value) {},
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afterGetState: function(key, value) {},
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afterRemoveState: function(key) {},
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onStart: function(tour) {},
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onEnd: function(tour) {},
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onShow: function(tour) {},
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onShown: function(tour) {},
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onHide: function(tour) {},
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onHidden: function(tour) {},
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onNext: function(tour) {},
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onPrev: function(tour) {},
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onPause: function(tour, duration) {},
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onResume: function(tour, duration) {}
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}, options);
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this._force = false;
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this._inited = false;
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this.backdrop = {
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overlay: null,
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$element: null,
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$background: null,
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backgroundShown: false,
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overlayElementShown: false
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};
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this;
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}
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Tour.prototype.addSteps = function(steps) {
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var step, _i, _len;
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for (_i = 0, _len = steps.length; _i < _len; _i++) {
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step = steps[_i];
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this.addStep(step);
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}
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return this;
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};
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Tour.prototype.addStep = function(step) {
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this._options.steps.push(step);
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return this;
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};
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Tour.prototype.getStep = function(i) {
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if (this._options.steps[i] != null) {
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return $.extend({
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id: "step-" + i,
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path: '',
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placement: 'right',
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title: '',
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content: '<p></p>',
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next: i === this._options.steps.length - 1 ? -1 : i + 1,
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prev: i - 1,
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animation: true,
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container: this._options.container,
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autoscroll: this._options.autoscroll,
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backdrop: this._options.backdrop,
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backdropPadding: this._options.backdropPadding,
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redirect: this._options.redirect,
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orphan: this._options.orphan,
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duration: this._options.duration,
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delay: this._options.delay,
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template: this._options.template,
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onShow: this._options.onShow,
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onShown: this._options.onShown,
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onHide: this._options.onHide,
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onHidden: this._options.onHidden,
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onNext: this._options.onNext,
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onPrev: this._options.onPrev,
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onPause: this._options.onPause,
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onResume: this._options.onResume
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}, this._options.steps[i]);
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}
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};
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Tour.prototype.init = function(force) {
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this._force = force;
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if (this.ended()) {
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this._debug('Tour ended, init prevented.');
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return this;
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}
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this.setCurrentStep();
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this._initMouseNavigation();
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this._initKeyboardNavigation();
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this._onResize((function(_this) {
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return function() {
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return _this.showStep(_this._current);
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};
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})(this));
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if (this._current !== null) {
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this.showStep(this._current);
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}
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this._inited = true;
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return this;
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};
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Tour.prototype.start = function(force) {
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var promise;
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if (force == null) {
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force = false;
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}
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if (!this._inited) {
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this.init(force);
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}
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if (this._current === null) {
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promise = this._makePromise(this._options.onStart != null ? this._options.onStart(this) : void 0);
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this._callOnPromiseDone(promise, this.showStep, 0);
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}
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return this;
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};
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Tour.prototype.next = function() {
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var promise;
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promise = this.hideStep(this._current);
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return this._callOnPromiseDone(promise, this._showNextStep);
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};
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Tour.prototype.prev = function() {
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var promise;
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promise = this.hideStep(this._current);
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return this._callOnPromiseDone(promise, this._showPrevStep);
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};
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Tour.prototype.goTo = function(i) {
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var promise;
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promise = this.hideStep(this._current);
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return this._callOnPromiseDone(promise, this.showStep, i);
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};
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Tour.prototype.end = function() {
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var endHelper, promise;
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endHelper = (function(_this) {
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return function(e) {
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$(document).off("click.tour-" + _this._options.name);
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$(document).off("keyup.tour-" + _this._options.name);
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$(window).off("resize.tour-" + _this._options.name);
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_this._setState('end', 'yes');
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_this._inited = false;
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_this._force = false;
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_this._clearTimer();
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if (_this._options.onEnd != null) {
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return _this._options.onEnd(_this);
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}
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};
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})(this);
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promise = this.hideStep(this._current);
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return this._callOnPromiseDone(promise, endHelper);
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};
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Tour.prototype.ended = function() {
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return !this._force && !!this._getState('end');
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};
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Tour.prototype.restart = function() {
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this._removeState('current_step');
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this._removeState('end');
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return this.start();
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};
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Tour.prototype.pause = function() {
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var step;
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step = this.getStep(this._current);
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if (!(step && step.duration)) {
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return this;
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}
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this._paused = true;
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this._duration -= new Date().getTime() - this._start;
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window.clearTimeout(this._timer);
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this._debug("Paused/Stopped step " + (this._current + 1) + " timer (" + this._duration + " remaining).");
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if (step.onPause != null) {
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return step.onPause(this, this._duration);
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}
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};
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Tour.prototype.resume = function() {
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var step;
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step = this.getStep(this._current);
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if (!(step && step.duration)) {
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return this;
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}
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this._paused = false;
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this._start = new Date().getTime();
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this._duration = this._duration || step.duration;
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this._timer = window.setTimeout((function(_this) {
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return function() {
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if (_this._isLast()) {
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return _this.next();
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} else {
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return _this.end();
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}
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};
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})(this), this._duration);
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this._debug("Started step " + (this._current + 1) + " timer with duration " + this._duration);
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if ((step.onResume != null) && this._duration !== step.duration) {
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return step.onResume(this, this._duration);
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}
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};
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Tour.prototype.hideStep = function(i) {
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var hideStepHelper, promise, step;
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step = this.getStep(i);
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if (!step) {
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return;
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}
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this._clearTimer();
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promise = this._makePromise(step.onHide != null ? step.onHide(this, i) : void 0);
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hideStepHelper = (function(_this) {
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return function(e) {
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var $element;
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$element = $(step.element);
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if (!($element.data('bs.popover') || $element.data('popover'))) {
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$element = $('body');
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}
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$element.popover('destroy').removeClass("tour-" + _this._options.name + "-element tour-" + _this._options.name + "-" + i + "-element");
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if (step.reflex) {
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$element.removeClass('tour-step-element-reflex').off("" + (_this._reflexEvent(step.reflex)) + ".tour-" + _this._options.name);
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}
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if (step.backdrop) {
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_this._hideBackdrop();
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}
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if (step.onHidden != null) {
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return step.onHidden(_this);
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}
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};
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})(this);
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this._callOnPromiseDone(promise, hideStepHelper);
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return promise;
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};
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Tour.prototype.showStep = function(i) {
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var promise, showStepHelper, skipToPrevious, step;
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if (this.ended()) {
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this._debug('Tour ended, showStep prevented.');
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return this;
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}
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step = this.getStep(i);
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if (!step) {
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return;
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}
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skipToPrevious = i < this._current;
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promise = this._makePromise(step.onShow != null ? step.onShow(this, i) : void 0);
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showStepHelper = (function(_this) {
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return function(e) {
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var current_path, path, showPopoverAndOverlay;
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_this.setCurrentStep(i);
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path = (function() {
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switch ({}.toString.call(step.path)) {
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case '[object Function]':
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return step.path();
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case '[object String]':
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return this._options.basePath + step.path;
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default:
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return step.path;
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}
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}).call(_this);
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current_path = [document.location.pathname, document.location.hash].join('');
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if (_this._isRedirect(path, current_path)) {
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_this._redirect(step, path);
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return;
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}
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if (_this._isOrphan(step)) {
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if (!step.orphan) {
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_this._debug("Skip the orphan step " + (_this._current + 1) + ".\nOrphan option is false and the element does not exist or is hidden.");
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if (skipToPrevious) {
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_this._showPrevStep();
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} else {
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_this._showNextStep();
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}
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return;
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}
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_this._debug("Show the orphan step " + (_this._current + 1) + ". Orphans option is true.");
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}
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if (step.backdrop) {
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_this._showBackdrop(!_this._isOrphan(step) ? step.element : void 0);
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}
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showPopoverAndOverlay = function() {
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if (_this.getCurrentStep() !== i) {
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return;
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}
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if ((step.element != null) && step.backdrop) {
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_this._showOverlayElement(step);
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}
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_this._showPopover(step, i);
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if (step.onShown != null) {
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step.onShown(_this);
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}
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return _this._debug("Step " + (_this._current + 1) + " of " + _this._options.steps.length);
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};
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if (step.autoscroll) {
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_this._scrollIntoView(step.element, showPopoverAndOverlay);
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} else {
|
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showPopoverAndOverlay();
|
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}
|
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if (step.duration) {
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return _this.resume();
|
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}
|
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};
|
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})(this);
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if (step.delay) {
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this._debug("Wait " + step.delay + " milliseconds to show the step " + (this._current + 1));
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window.setTimeout((function(_this) {
|
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return function() {
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return _this._callOnPromiseDone(promise, showStepHelper);
|
||||
};
|
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})(this), step.delay);
|
||||
} else {
|
||||
this._callOnPromiseDone(promise, showStepHelper);
|
||||
}
|
||||
return promise;
|
||||
};
|
||||
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Tour.prototype.getCurrentStep = function() {
|
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return this._current;
|
||||
};
|
||||
|
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Tour.prototype.setCurrentStep = function(value) {
|
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if (value != null) {
|
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this._current = value;
|
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this._setState('current_step', value);
|
||||
} else {
|
||||
this._current = this._getState('current_step');
|
||||
this._current = this._current === null ? null : parseInt(this._current, 10);
|
||||
}
|
||||
return this;
|
||||
};
|
||||
|
||||
Tour.prototype._setState = function(key, value) {
|
||||
var e, keyName;
|
||||
if (this._options.storage) {
|
||||
keyName = "" + this._options.name + "_" + key;
|
||||
try {
|
||||
this._options.storage.setItem(keyName, value);
|
||||
} catch (_error) {
|
||||
e = _error;
|
||||
if (e.code === DOMException.QUOTA_EXCEEDED_ERR) {
|
||||
this._debug('LocalStorage quota exceeded. State storage failed.');
|
||||
}
|
||||
}
|
||||
return this._options.afterSetState(keyName, value);
|
||||
} else {
|
||||
if (this._state == null) {
|
||||
this._state = {};
|
||||
}
|
||||
return this._state[key] = value;
|
||||
}
|
||||
};
|
||||
|
||||
Tour.prototype._removeState = function(key) {
|
||||
var keyName;
|
||||
if (this._options.storage) {
|
||||
keyName = "" + this._options.name + "_" + key;
|
||||
this._options.storage.removeItem(keyName);
|
||||
return this._options.afterRemoveState(keyName);
|
||||
} else {
|
||||
if (this._state != null) {
|
||||
return delete this._state[key];
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
Tour.prototype._getState = function(key) {
|
||||
var keyName, value;
|
||||
if (this._options.storage) {
|
||||
keyName = "" + this._options.name + "_" + key;
|
||||
value = this._options.storage.getItem(keyName);
|
||||
} else {
|
||||
if (this._state != null) {
|
||||
value = this._state[key];
|
||||
}
|
||||
}
|
||||
if (value === void 0 || value === 'null') {
|
||||
value = null;
|
||||
}
|
||||
this._options.afterGetState(key, value);
|
||||
return value;
|
||||
};
|
||||
|
||||
Tour.prototype._showNextStep = function() {
|
||||
var promise, showNextStepHelper, step;
|
||||
step = this.getStep(this._current);
|
||||
showNextStepHelper = (function(_this) {
|
||||
return function(e) {
|
||||
return _this.showStep(step.next);
|
||||
};
|
||||
})(this);
|
||||
promise = this._makePromise(step.onNext != null ? step.onNext(this) : void 0);
|
||||
return this._callOnPromiseDone(promise, showNextStepHelper);
|
||||
};
|
||||
|
||||
Tour.prototype._showPrevStep = function() {
|
||||
var promise, showPrevStepHelper, step;
|
||||
step = this.getStep(this._current);
|
||||
showPrevStepHelper = (function(_this) {
|
||||
return function(e) {
|
||||
return _this.showStep(step.prev);
|
||||
};
|
||||
})(this);
|
||||
promise = this._makePromise(step.onPrev != null ? step.onPrev(this) : void 0);
|
||||
return this._callOnPromiseDone(promise, showPrevStepHelper);
|
||||
};
|
||||
|
||||
Tour.prototype._debug = function(text) {
|
||||
if (this._options.debug) {
|
||||
return window.console.log("Bootstrap Tour '" + this._options.name + "' | " + text);
|
||||
}
|
||||
};
|
||||
|
||||
Tour.prototype._isRedirect = function(path, currentPath) {
|
||||
return (path != null) && path !== '' && (({}.toString.call(path) === '[object RegExp]' && !path.test(currentPath)) || ({}.toString.call(path) === '[object String]' && path.replace(/\?.*$/, '').replace(/\/?$/, '') !== currentPath.replace(/\/?$/, '')));
|
||||
};
|
||||
|
||||
Tour.prototype._redirect = function(step, path) {
|
||||
if ($.isFunction(step.redirect)) {
|
||||
return step.redirect.call(this, path);
|
||||
} else if (step.redirect === true) {
|
||||
this._debug("Redirect to " + path);
|
||||
return document.location.href = path;
|
||||
}
|
||||
};
|
||||
|
||||
Tour.prototype._isOrphan = function(step) {
|
||||
return (step.element == null) || !$(step.element).length || $(step.element).is(':hidden') && ($(step.element)[0].namespaceURI !== 'http://www.w3.org/2000/svg');
|
||||
};
|
||||
|
||||
Tour.prototype._isLast = function() {
|
||||
return this._current < this._options.steps.length - 1;
|
||||
};
|
||||
|
||||
Tour.prototype._showPopover = function(step, i) {
|
||||
var $element, $tip, isOrphan, options;
|
||||
$(".tour-" + this._options.name).remove();
|
||||
options = $.extend({}, this._options);
|
||||
isOrphan = this._isOrphan(step);
|
||||
step.template = this._template(step, i);
|
||||
if (isOrphan) {
|
||||
step.element = 'body';
|
||||
step.placement = 'top';
|
||||
}
|
||||
$element = $(step.element);
|
||||
$element.addClass("tour-" + this._options.name + "-element tour-" + this._options.name + "-" + i + "-element");
|
||||
if (step.options) {
|
||||
$.extend(options, step.options);
|
||||
}
|
||||
if (step.reflex && !isOrphan) {
|
||||
$element.addClass('tour-step-element-reflex');
|
||||
$element.off("" + (this._reflexEvent(step.reflex)) + ".tour-" + this._options.name);
|
||||
$element.on("" + (this._reflexEvent(step.reflex)) + ".tour-" + this._options.name, (function(_this) {
|
||||
return function() {
|
||||
if (_this._isLast()) {
|
||||
return _this.next();
|
||||
} else {
|
||||
return _this.end();
|
||||
}
|
||||
};
|
||||
})(this));
|
||||
}
|
||||
$element.popover({
|
||||
placement: step.placement,
|
||||
trigger: 'manual',
|
||||
title: step.title,
|
||||
content: step.content,
|
||||
html: true,
|
||||
animation: step.animation,
|
||||
container: step.container,
|
||||
template: step.template,
|
||||
selector: step.element
|
||||
}).popover('show');
|
||||
$tip = $element.data('bs.popover') ? $element.data('bs.popover').tip() : $element.data('popover').tip();
|
||||
$tip.attr('id', step.id);
|
||||
this._reposition($tip, step);
|
||||
if (isOrphan) {
|
||||
return this._center($tip);
|
||||
}
|
||||
};
|
||||
|
||||
Tour.prototype._template = function(step, i) {
|
||||
var $navigation, $next, $prev, $resume, $template;
|
||||
$template = $.isFunction(step.template) ? $(step.template(i, step)) : $(step.template);
|
||||
$navigation = $template.find('.popover-navigation');
|
||||
$prev = $navigation.find('[data-role="prev"]');
|
||||
$next = $navigation.find('[data-role="next"]');
|
||||
$resume = $navigation.find('[data-role="pause-resume"]');
|
||||
if (this._isOrphan(step)) {
|
||||
$template.addClass('orphan');
|
||||
}
|
||||
$template.addClass("tour-" + this._options.name + " tour-" + this._options.name + "-" + i);
|
||||
if (step.prev < 0) {
|
||||
$prev.addClass('disabled');
|
||||
}
|
||||
if (step.next < 0) {
|
||||
$next.addClass('disabled');
|
||||
}
|
||||
if (!step.duration) {
|
||||
$resume.remove();
|
||||
}
|
||||
return $template.clone().wrap('<div>').parent().html();
|
||||
};
|
||||
|
||||
Tour.prototype._reflexEvent = function(reflex) {
|
||||
if ({}.toString.call(reflex) === '[object Boolean]') {
|
||||
return 'click';
|
||||
} else {
|
||||
return reflex;
|
||||
}
|
||||
};
|
||||
|
||||
Tour.prototype._reposition = function($tip, step) {
|
||||
var offsetBottom, offsetHeight, offsetRight, offsetWidth, originalLeft, originalTop, tipOffset;
|
||||
offsetWidth = $tip[0].offsetWidth;
|
||||
offsetHeight = $tip[0].offsetHeight;
|
||||
tipOffset = $tip.offset();
|
||||
originalLeft = tipOffset.left;
|
||||
originalTop = tipOffset.top;
|
||||
offsetBottom = $(document).outerHeight() - tipOffset.top - $tip.outerHeight();
|
||||
if (offsetBottom < 0) {
|
||||
tipOffset.top = tipOffset.top + offsetBottom;
|
||||
}
|
||||
offsetRight = $('html').outerWidth() - tipOffset.left - $tip.outerWidth();
|
||||
if (offsetRight < 0) {
|
||||
tipOffset.left = tipOffset.left + offsetRight;
|
||||
}
|
||||
if (tipOffset.top < 0) {
|
||||
tipOffset.top = 0;
|
||||
}
|
||||
if (tipOffset.left < 0) {
|
||||
tipOffset.left = 0;
|
||||
}
|
||||
$tip.offset(tipOffset);
|
||||
if (step.placement === 'bottom' || step.placement === 'top') {
|
||||
if (originalLeft !== tipOffset.left) {
|
||||
return this._replaceArrow($tip, (tipOffset.left - originalLeft) * 2, offsetWidth, 'left');
|
||||
}
|
||||
} else {
|
||||
if (originalTop !== tipOffset.top) {
|
||||
return this._replaceArrow($tip, (tipOffset.top - originalTop) * 2, offsetHeight, 'top');
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
Tour.prototype._center = function($tip) {
|
||||
return $tip.css('top', $(window).outerHeight() / 2 - $tip.outerHeight() / 2);
|
||||
};
|
||||
|
||||
Tour.prototype._replaceArrow = function($tip, delta, dimension, position) {
|
||||
return $tip.find('.arrow').css(position, delta ? 50 * (1 - delta / dimension) + '%' : '');
|
||||
};
|
||||
|
||||
Tour.prototype._scrollIntoView = function(element, callback) {
|
||||
var $element, $window, counter, offsetTop, scrollTop, windowHeight;
|
||||
$element = $(element);
|
||||
if (!$element.length) {
|
||||
return callback();
|
||||
}
|
||||
$window = $(window);
|
||||
offsetTop = $element.offset().top;
|
||||
windowHeight = $window.height();
|
||||
scrollTop = Math.max(0, offsetTop - (windowHeight / 2));
|
||||
this._debug("Scroll into view. ScrollTop: " + scrollTop + ". Element offset: " + offsetTop + ". Window height: " + windowHeight + ".");
|
||||
counter = 0;
|
||||
return $('body, html').stop(true, true).animate({
|
||||
scrollTop: Math.ceil(scrollTop)
|
||||
}, (function(_this) {
|
||||
return function() {
|
||||
if (++counter === 2) {
|
||||
callback();
|
||||
return _this._debug("Scroll into view.\nAnimation end element offset: " + ($element.offset().top) + ".\nWindow height: " + ($window.height()) + ".");
|
||||
}
|
||||
};
|
||||
})(this));
|
||||
};
|
||||
|
||||
Tour.prototype._onResize = function(callback, timeout) {
|
||||
return $(window).on("resize.tour-" + this._options.name, function() {
|
||||
clearTimeout(timeout);
|
||||
return timeout = setTimeout(callback, 100);
|
||||
});
|
||||
};
|
||||
|
||||
Tour.prototype._initMouseNavigation = function() {
|
||||
var _this;
|
||||
_this = this;
|
||||
return $(document).off("click.tour-" + this._options.name, ".popover.tour-" + this._options.name + " *[data-role='prev']").off("click.tour-" + this._options.name, ".popover.tour-" + this._options.name + " *[data-role='next']").off("click.tour-" + this._options.name, ".popover.tour-" + this._options.name + " *[data-role='end']").off("click.tour-" + this._options.name, ".popover.tour-" + this._options.name + " *[data-role='pause-resume']").on("click.tour-" + this._options.name, ".popover.tour-" + this._options.name + " *[data-role='next']", (function(_this) {
|
||||
return function(e) {
|
||||
e.preventDefault();
|
||||
return _this.next();
|
||||
};
|
||||
})(this)).on("click.tour-" + this._options.name, ".popover.tour-" + this._options.name + " *[data-role='prev']", (function(_this) {
|
||||
return function(e) {
|
||||
e.preventDefault();
|
||||
return _this.prev();
|
||||
};
|
||||
})(this)).on("click.tour-" + this._options.name, ".popover.tour-" + this._options.name + " *[data-role='end']", (function(_this) {
|
||||
return function(e) {
|
||||
e.preventDefault();
|
||||
return _this.end();
|
||||
};
|
||||
})(this)).on("click.tour-" + this._options.name, ".popover.tour-" + this._options.name + " *[data-role='pause-resume']", function(e) {
|
||||
var $this;
|
||||
e.preventDefault();
|
||||
$this = $(this);
|
||||
$this.text(_this._paused ? $this.data('pause-text') : $this.data('resume-text'));
|
||||
if (_this._paused) {
|
||||
return _this.resume();
|
||||
} else {
|
||||
return _this.pause();
|
||||
}
|
||||
});
|
||||
};
|
||||
|
||||
Tour.prototype._initKeyboardNavigation = function() {
|
||||
if (!this._options.keyboard) {
|
||||
return;
|
||||
}
|
||||
return $(document).on("keyup.tour-" + this._options.name, (function(_this) {
|
||||
return function(e) {
|
||||
if (!e.which) {
|
||||
return;
|
||||
}
|
||||
switch (e.which) {
|
||||
case 39:
|
||||
e.preventDefault();
|
||||
if (_this._isLast()) {
|
||||
return _this.next();
|
||||
} else {
|
||||
return _this.end();
|
||||
}
|
||||
break;
|
||||
case 37:
|
||||
e.preventDefault();
|
||||
if (_this._current > 0) {
|
||||
return _this.prev();
|
||||
}
|
||||
break;
|
||||
case 27:
|
||||
e.preventDefault();
|
||||
return _this.end();
|
||||
}
|
||||
};
|
||||
})(this));
|
||||
};
|
||||
|
||||
Tour.prototype._makePromise = function(result) {
|
||||
if (result && $.isFunction(result.then)) {
|
||||
return result;
|
||||
} else {
|
||||
return null;
|
||||
}
|
||||
};
|
||||
|
||||
Tour.prototype._callOnPromiseDone = function(promise, cb, arg) {
|
||||
if (promise) {
|
||||
return promise.then((function(_this) {
|
||||
return function(e) {
|
||||
return cb.call(_this, arg);
|
||||
};
|
||||
})(this));
|
||||
} else {
|
||||
return cb.call(this, arg);
|
||||
}
|
||||
};
|
||||
|
||||
Tour.prototype._showBackdrop = function(element) {
|
||||
if (this.backdrop.backgroundShown) {
|
||||
return;
|
||||
}
|
||||
this.backdrop = $('<div>', {
|
||||
"class": 'tour-backdrop'
|
||||
});
|
||||
this.backdrop.backgroundShown = true;
|
||||
return $('body').append(this.backdrop);
|
||||
};
|
||||
|
||||
Tour.prototype._hideBackdrop = function() {
|
||||
this._hideOverlayElement();
|
||||
return this._hideBackground();
|
||||
};
|
||||
|
||||
Tour.prototype._hideBackground = function() {
|
||||
if (this.backdrop) {
|
||||
this.backdrop.remove();
|
||||
this.backdrop.overlay = null;
|
||||
return this.backdrop.backgroundShown = false;
|
||||
}
|
||||
};
|
||||
|
||||
Tour.prototype._showOverlayElement = function(step) {
|
||||
var $element, elementData;
|
||||
$element = $(step.element);
|
||||
if (!$element || $element.length === 0 || this.backdrop.overlayElementShown) {
|
||||
return;
|
||||
}
|
||||
this.backdrop.overlayElementShown = true;
|
||||
this.backdrop.$element = $element.addClass('tour-step-backdrop');
|
||||
this.backdrop.$background = $('<div>', {
|
||||
"class": 'tour-step-background'
|
||||
});
|
||||
elementData = {
|
||||
width: $element.innerWidth(),
|
||||
height: $element.innerHeight(),
|
||||
offset: $element.offset()
|
||||
};
|
||||
this.backdrop.$background.appendTo('body');
|
||||
if (step.backdropPadding) {
|
||||
elementData = this._applyBackdropPadding(step.backdropPadding, elementData);
|
||||
}
|
||||
return this.backdrop.$background.width(elementData.width).height(elementData.height).offset(elementData.offset);
|
||||
};
|
||||
|
||||
Tour.prototype._hideOverlayElement = function() {
|
||||
if (!this.backdrop.overlayElementShown) {
|
||||
return;
|
||||
}
|
||||
this.backdrop.$element.removeClass('tour-step-backdrop');
|
||||
this.backdrop.$background.remove();
|
||||
this.backdrop.$element = null;
|
||||
this.backdrop.$background = null;
|
||||
return this.backdrop.overlayElementShown = false;
|
||||
};
|
||||
|
||||
Tour.prototype._applyBackdropPadding = function(padding, data) {
|
||||
if (typeof padding === 'object') {
|
||||
if (padding.top == null) {
|
||||
padding.top = 0;
|
||||
}
|
||||
if (padding.right == null) {
|
||||
padding.right = 0;
|
||||
}
|
||||
if (padding.bottom == null) {
|
||||
padding.bottom = 0;
|
||||
}
|
||||
if (padding.left == null) {
|
||||
padding.left = 0;
|
||||
}
|
||||
data.offset.top = data.offset.top - padding.top;
|
||||
data.offset.left = data.offset.left - padding.left;
|
||||
data.width = data.width + padding.left + padding.right;
|
||||
data.height = data.height + padding.top + padding.bottom;
|
||||
} else {
|
||||
data.offset.top = data.offset.top - padding;
|
||||
data.offset.left = data.offset.left - padding;
|
||||
data.width = data.width + (padding * 2);
|
||||
data.height = data.height + (padding * 2);
|
||||
}
|
||||
return data;
|
||||
};
|
||||
|
||||
Tour.prototype._clearTimer = function() {
|
||||
window.clearTimeout(this._timer);
|
||||
this._timer = null;
|
||||
return this._duration = null;
|
||||
};
|
||||
|
||||
return Tour;
|
||||
|
||||
})();
|
||||
return window.Tour = Tour;
|
||||
})(jQuery, window);
|
||||
@@ -332,4 +332,4 @@ define([ 'utils/utils', 'mvc/ui/ui-misc', 'mvc/form/form-view', 'mvc/form/form-d
|
||||
return {
|
||||
View: View
|
||||
};
|
||||
});
|
||||
});
|
||||
|
||||
@@ -0,0 +1,130 @@
|
||||
/**
|
||||
* This is the primary galaxy tours definition, currently only used for
|
||||
* rendering a tour menu.
|
||||
*
|
||||
* For now it's intended to be plunked into the center display a-la
|
||||
* Galaxy.app.display, but we could use a modal as well for more flexibility.
|
||||
*
|
||||
* DBTODO - This is downright backbone abuse, rewrite it.
|
||||
*/
|
||||
|
||||
define(['libs/bootstrap-tour'],function(BootstrapTour) {
|
||||
|
||||
var tour_opts = { storage: window.sessionStorage,
|
||||
onEnd: function(){
|
||||
sessionStorage.removeItem('activeGalaxyTour');
|
||||
},
|
||||
delay: 150, // Attempts to make it look natural
|
||||
orphan:true
|
||||
}
|
||||
|
||||
var hooked_tour_from_data = function(data){
|
||||
_.each(data.steps, function(step) {
|
||||
if (step.preclick){
|
||||
step.onShow= function(){
|
||||
_.each(step.preclick, function(preclick){
|
||||
// TODO: click delay between clicks
|
||||
$(preclick).click();
|
||||
});
|
||||
};
|
||||
}
|
||||
if (step.postclick){
|
||||
step.onHide = function(){
|
||||
_.each(step.postclick, function(postclick){
|
||||
// TODO: click delay between clicks
|
||||
$(postclick).click();
|
||||
});
|
||||
};
|
||||
}
|
||||
if (step.textinsert){
|
||||
// Have to manually trigger a change here, for some
|
||||
// elements which have additional logic, like the
|
||||
// upload input box
|
||||
step.onShown= function(){
|
||||
$(step.element).val(step.textinsert).trigger("change")
|
||||
};
|
||||
}
|
||||
});
|
||||
return data;
|
||||
}
|
||||
|
||||
// DBTODO: there's probably a better way to do this for pages which don't
|
||||
// have Galaxy objects.
|
||||
if (typeof Galaxy != "undefined") {
|
||||
var gxy_root = Galaxy.root;
|
||||
}else{
|
||||
var gxy_root = '/';
|
||||
}
|
||||
|
||||
var TourItem = Backbone.Model.extend({
|
||||
urlRoot: gxy_root + 'api/tours',
|
||||
});
|
||||
|
||||
var Tours = Backbone.Collection.extend({
|
||||
url: gxy_root + 'api/tours',
|
||||
model: TourItem,
|
||||
});
|
||||
|
||||
|
||||
var giveTour = function(tour_id){
|
||||
var url = gxy_root + 'api/tours/' + tour_id;
|
||||
$.getJSON( url, function( data ) {
|
||||
// Set hooks for additional click and data entry actions.
|
||||
tourdata = hooked_tour_from_data(data);
|
||||
console.log(tourdata);
|
||||
sessionStorage.setItem('activeGalaxyTour', JSON.stringify(data));
|
||||
// Store tour steps in sessionStorage to easily persist w/o hackery.
|
||||
var tour = new Tour(_.extend({
|
||||
steps: tourdata.steps,
|
||||
}, tour_opts));
|
||||
// Always clean restart, since this is a new, explicit giveTour execution.
|
||||
tour.init();
|
||||
tour.goTo(0);
|
||||
tour.restart();
|
||||
});
|
||||
}
|
||||
|
||||
var ToursView = Backbone.View.extend({
|
||||
// initialize
|
||||
initialize: function(options) {
|
||||
var self = this;
|
||||
this.setElement('<div/>');
|
||||
this.model = new Tours()
|
||||
this.model.fetch({
|
||||
success: function( model ){
|
||||
self.render();
|
||||
},
|
||||
error: function( model, response ){
|
||||
// Do something.
|
||||
console.error("Failed to fetch tours.");
|
||||
}
|
||||
});
|
||||
},
|
||||
|
||||
render: function(){
|
||||
var self = this;
|
||||
var tpl = _.template([
|
||||
"<h2>Galaxy Tours</h2>",
|
||||
"<p>This page presents a list of interactive tours available on this Galaxy server. ",
|
||||
"Select any tour to get started (and remember, you can click 'End Tour' at any time).</p>",
|
||||
"<ul>",
|
||||
'<% _.each(tours, function(tour) { %>',
|
||||
'<li>',
|
||||
'<a href="#" class="tourItem" data-tour.id=<%- tour.id %>>',
|
||||
'<%- tour.attributes.name || tour.id %>',
|
||||
'</a>',
|
||||
' - <%- tour.attributes.description || "No description given." %>',
|
||||
'</li>',
|
||||
'<% }); %>',
|
||||
"</ul>"].join(''));
|
||||
this.$el.html(tpl({tours: this.model.models})).on("click", ".tourItem", function(e){
|
||||
giveTour($(this).data("tour.id"));
|
||||
});
|
||||
}
|
||||
});
|
||||
|
||||
return {ToursView: ToursView,
|
||||
hooked_tour_from_data: hooked_tour_from_data,
|
||||
tour_opts: tour_opts,
|
||||
giveTour: giveTour}
|
||||
});
|
||||
@@ -77,7 +77,7 @@ var View = Backbone.View.extend({
|
||||
return '<div class="upload-button">' +
|
||||
'<div class="progress">' +
|
||||
'<div class="progress-bar"/>' +
|
||||
'<a class="panel-header-button" href="javascript:void(0)">' +
|
||||
'<a class="panel-header-button" href="javascript:void(0)" id="tool-panel-upload-button">' +
|
||||
'<span class="fa fa-upload"/>' +
|
||||
'</a>' +
|
||||
'</div>' +
|
||||
|
||||
@@ -20,6 +20,7 @@ var POPUPMENU = require( 'ui/popupmenu' );
|
||||
window.make_popupmenu = POPUPMENU.make_popupmenu;
|
||||
window.make_popup_menus = POPUPMENU.make_popup_menus;
|
||||
window.init_tag_click_function = require( 'ui/autocom_tagging' );
|
||||
var TOURS = require( 'mvc/tours' );
|
||||
// console.debug( 'galaxy globals loaded' );
|
||||
|
||||
// ============================================================================
|
||||
@@ -165,4 +166,39 @@ $(document).ready( function() {
|
||||
return anchor;
|
||||
});
|
||||
|
||||
try{
|
||||
// So, depending on what elements your tour is hooked to, this may not
|
||||
// work on some pages with some rendered content because of view
|
||||
// rendering delays.
|
||||
// Another option is to present an icon for 'continue-tour' somewhere?
|
||||
urlparms = _.object(_.compact(_.map(location.search.slice(1).split('&'), function(item) { if (item) return item.split('='); })));
|
||||
if (urlparms.tour_id){
|
||||
var tour_id = urlparms.tour_id;
|
||||
delete urlparms.tour_id;
|
||||
var url = $(location).attr('href');
|
||||
var repacked_url_args = _.map(Object.getOwnPropertyNames(urlparms), function(k) { return "?" + [k, urlparms[k]].join('=') }).join('&');
|
||||
url = window.location.href.split('?')[0];
|
||||
if (repacked_url_args !== "?"){
|
||||
url = url + repacked_url_args;
|
||||
}
|
||||
history.pushState(null, null, url);
|
||||
TOURS.giveTour(tour_id);
|
||||
}
|
||||
else{
|
||||
et = JSON.parse(sessionStorage.getItem('activeGalaxyTour'));
|
||||
if (et){
|
||||
et = TOURS.hooked_tour_from_data(et);
|
||||
if (et && et.steps){
|
||||
var tour = new Tour(_.extend({
|
||||
steps: et.steps,
|
||||
}, TOURS.tour_opts));
|
||||
tour.init();
|
||||
tour.restart();
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
catch(ex){
|
||||
console.log("Tour loading failure, you'll need to restart the tour manually." + ex);
|
||||
}
|
||||
});
|
||||
|
||||
@@ -23,6 +23,7 @@ module.exports = function( grunt ){
|
||||
|
||||
'farbtastic': [ 'src/farbtastic.js', 'farbtastic.js' ],
|
||||
'jQTouch': [ 'src/reference/jqtouch.js', 'jquery/jqtouch.js' ],
|
||||
'bootstrap-tour': [ 'build/js/bootstrap-tour.js', 'bootstrap-tour.js' ],
|
||||
|
||||
// these need to be updated and tested
|
||||
//'jquery-form': [ 'jquery.form.js', 'jquery/jquery.form.js' ],
|
||||
@@ -90,4 +91,4 @@ module.exports = function( grunt ){
|
||||
grunt.registerTask( 'copy-libs', 'copy external libraries to src', copyLibs );
|
||||
grunt.registerTask( 'install-libs', 'fetch external libraries and copy to src',
|
||||
[ 'bower-install-simple:prod', 'copy-libs' ] );
|
||||
};
|
||||
};
|
||||
|
||||
@@ -19,6 +19,7 @@ var webpack = require( 'webpack' ),
|
||||
'libs/jquery.sparklines',
|
||||
'libs/jquery/jquery-ui',
|
||||
'libs/bootstrap',
|
||||
'libs/bootstrap-tour',
|
||||
// mvc
|
||||
'libs/underscore',
|
||||
'libs/backbone',
|
||||
|
||||
@@ -273,9 +273,18 @@ paste.app_factory = galaxy.web.buildapp:app_factory
|
||||
# environment plugins. By default none will be loaded. Set to
|
||||
# config/plugins/interactive_environments to load Galaxy's stock plugins
|
||||
# (currently just IPython). These will require Docker to be configured and
|
||||
# have security considerations, so proceed with caution.
|
||||
# have security considerations, so proceed with caution. The path is relative to the
|
||||
# Galaxy root dir. To use an absolute path begin the path with '/'. This is a comma
|
||||
# separated list.
|
||||
#interactive_environment_plugins_directory =
|
||||
|
||||
# Interactive tour directory: where to store interactive tour definition files.
|
||||
# Galaxy ships with several basic interface tours enabled, though a different
|
||||
# directory with custom tours can be specified here. The path is relative to the
|
||||
# Galaxy root dir. To use an absolute path begin the path with '/'. This is a comma
|
||||
# separated list.
|
||||
#tour_config_dir = config/plugins/tours
|
||||
|
||||
# Each job is given a unique empty directory as its current working directory.
|
||||
# This option defines in what parent directory those directories will be
|
||||
# created.
|
||||
|
||||
@@ -0,0 +1,96 @@
|
||||
name: Galaxy UI
|
||||
description: A gentle introduction to the Galaxy User Interface
|
||||
title_default: "Welcome to Galaxy"
|
||||
steps:
|
||||
- title: "Welcome to Galaxy"
|
||||
content: "This short tour will walk you through Galaxy's user interface."
|
||||
backdrop: true
|
||||
|
||||
- element: ".upload-button"
|
||||
intro: "Use this button to upload your data."
|
||||
position: "right"
|
||||
postclick:
|
||||
- ".upload-button"
|
||||
|
||||
- element: "button#btn-local"
|
||||
intro: "Upload data from your computer."
|
||||
position: "top"
|
||||
postclick:
|
||||
- "button#btn-new"
|
||||
- element: "button#btn-new"
|
||||
intro: "Copy and Paste data or include URLs."
|
||||
position: "top"
|
||||
preclick:
|
||||
- ".upload-button"
|
||||
|
||||
- element: "textarea#text-content"
|
||||
intro: "Insert data into Galaxy."
|
||||
position: "top"
|
||||
textinsert: |
|
||||
https://raw.githubusercontent.com/arq5x/bedtools/master/test/merge/a.full.bed
|
||||
https://raw.githubusercontent.com/arq5x/bedtools/master/test/merge/a.full.bed
|
||||
https://raw.githubusercontent.com/arq5x/bedtools/master/test/merge/a.full.bed
|
||||
|
||||
- element: "button#btn-start"
|
||||
intro: "Upload the data into your Galaxy history."
|
||||
position: "bottom"
|
||||
postclick:
|
||||
- "button#btn-start"
|
||||
|
||||
- element: "button#btn-close"
|
||||
intro: "Hit the close button in upload."
|
||||
position: "bottom"
|
||||
postclick:
|
||||
- "#btn-close"
|
||||
|
||||
|
||||
- element: 'a[href$="tool_runner?tool_id=Filter1"]'
|
||||
intro: "Tools are grouped into categories to make them easier to find."
|
||||
position: "right"
|
||||
preclick:
|
||||
- 'a[href$="tool_runner?tool_id=Filter1"]'
|
||||
postclick:
|
||||
- "#title_filter a"
|
||||
|
||||
- element: '#center-panel'
|
||||
intro: "This is your Filter tool."
|
||||
position: "right"
|
||||
preclick:
|
||||
- '#center-panel'
|
||||
|
||||
- element: '#uid-0'
|
||||
intro: "Your tool parameters."
|
||||
position: "right"
|
||||
|
||||
- element: 'div.toolHelp'
|
||||
intro: "Your tool parameters."
|
||||
position: "right"
|
||||
- element: '#execute'
|
||||
intro: "Send your tool to the Compute Cluster."
|
||||
position: "right"
|
||||
preclick:
|
||||
- '#execute'
|
||||
- element: "#right"
|
||||
intro: "This is your history! All anylysis steps will be recorded and can be redone at any time."
|
||||
position: "left"
|
||||
- element: "#masthead"
|
||||
intro: "Your top panel will give you access to a lot of useful things."
|
||||
position: "bottom"
|
||||
- element: "#analysis"
|
||||
intro: "Start your <b>analysis</b> from here."
|
||||
position: "bottom"
|
||||
- element: "#workflow"
|
||||
intro: "Manage, Import, Export and Share your <b>Workflows</b>."
|
||||
position: "bottom"
|
||||
- element: "#shared"
|
||||
intro: "Get access to all <b>Workflows, <b>Histories</b>, <b>Pages</b>, <b>Visualizations</b> and you <b>Data Library</b> that are shared with you."
|
||||
position: "bottom"
|
||||
- element: "#visualization"
|
||||
intro: "Want to start visualize your data in Trackster? Start here!"
|
||||
position: "bottom"
|
||||
- element: "#help"
|
||||
intro: "Here you get more help from the Galaxy <b>Community</b> with Videos and a QA board."
|
||||
position: "bottom"
|
||||
- element: "#user"
|
||||
intro: "Login and start your analysis!"
|
||||
position: "bottom"
|
||||
@@ -0,0 +1,143 @@
|
||||
name: History Introduction
|
||||
description: A detailed introduction to the <b>Galaxy History</b>
|
||||
title_default: "Galaxy History Introduction"
|
||||
steps:
|
||||
- content: "This short tour will walk you through <b>Galaxy's History</b> and datasets."
|
||||
|
||||
- element: ".upload-button"
|
||||
intro: |
|
||||
At first we get some data into your Galaxy and into your History.<br>
|
||||
Use this button to upload your data.
|
||||
position: "right"
|
||||
postclick:
|
||||
- ".upload-button"
|
||||
|
||||
- element: "button#btn-local"
|
||||
intro: "Upload data from your computer."
|
||||
position: "top"
|
||||
postclick:
|
||||
- "button#btn-new"
|
||||
|
||||
- element: "button#btn-new"
|
||||
intro: "Copy and Paste data or include URLs to data which will be fetched automatically by Galaxy."
|
||||
position: "top"
|
||||
|
||||
- element: "textarea#text-content"
|
||||
intro: "We insert some URLs to get example data in Galaxy."
|
||||
position: "bottom"
|
||||
textinsert: |
|
||||
file://home/bag/Bilder/Python-Programming-in-Galaxy.png
|
||||
file://home/bag/Downloads/a.tab
|
||||
|
||||
- element: "button#btn-start"
|
||||
intro: "Upload the data into your Galaxy <b>History</b>."
|
||||
position: "bottom"
|
||||
postclick:
|
||||
- "button#btn-start"
|
||||
- "button#btn-close"
|
||||
|
||||
- element: "#right"
|
||||
intro: "This is your history! All anylysis steps will be recorded and can be redone at any time."
|
||||
position: "left"
|
||||
|
||||
- element: "#dataset-2d9035b3fc152403"
|
||||
intro: "This is one of your uploaded datasets. You can get more informations and options like different visualizations by clicking on it."
|
||||
position: "left"
|
||||
postclick:
|
||||
- "#dataset-2d9035b3fc152403 > div.title-bar.clear > div > span.name"
|
||||
|
||||
- element: "#dataset-2d9035b3fc152403 > div.details > div.summary > div.datatype > label"
|
||||
title: "Metadata"
|
||||
intro: "Galaxy has assigned a datatype too your dataset during upload, which you can see here."
|
||||
position: "left"
|
||||
|
||||
- element: "#dataset-2d9035b3fc152403 > div.details > div.actions.clear > div.left > a.download-btn.icon-btn"
|
||||
title: "Download your dataset"
|
||||
intro: "You can download every dataset by using the floppy disc symbol."
|
||||
position: "left"
|
||||
|
||||
- element: "#dataset-2d9035b3fc152403 > div.details > div.actions.clear > div.left > a.icon-btn.params-btn"
|
||||
title: "Even more information"
|
||||
intro: "Get an overview of all metadata associated with your dataset by using the Information symbol."
|
||||
position: "left"
|
||||
preclick:
|
||||
- "#dataset-2d9035b3fc152403 > div.details > div.actions.clear > div.left > a.icon-btn.params-btn"
|
||||
|
||||
|
||||
|
||||
- element: "#dataset-2d9035b3fc152403 > div.primary-actions > a.icon-btn.display-btn"
|
||||
title: "Inspect your data"
|
||||
intro: "The eye symbol can be used to look at your data."
|
||||
position: "left"
|
||||
preclick:
|
||||
- "#dataset-2d9035b3fc152403 > div.primary-actions > a.icon-btn.display-btn"
|
||||
|
||||
- element: "#dataset-2d9035b3fc152403 > div.primary-actions > a.icon-btn.edit-btn"
|
||||
title: "Edit metadata"
|
||||
intro: "With the pencil button you can edit metadata attributes of your dataset, like the associated filetype or the dataset name."
|
||||
position: "left"
|
||||
preclick:
|
||||
- "#dataset-2d9035b3fc152403 > div.primary-actions > a.icon-btn.edit-btn"
|
||||
|
||||
- element: "#dataset-2d9035b3fc152403 > div.primary-actions > a.icon-btn.delete-btn"
|
||||
title: "Remove datasets"
|
||||
intro: "You can remove a dataset from the history with the cross symbol."
|
||||
position: "left"
|
||||
postclick:
|
||||
- "#dataset-2d9035b3fc152403 > div.primary-actions > a.icon-btn.delete-btn"
|
||||
|
||||
- element: "#current-history-panel > div.controls > div.subtitle > a"
|
||||
title: "Include all deleted datasets"
|
||||
intro: "By default your history will hide all deleted datasets from you. You can visualize them by toggling this button."
|
||||
position: "bottom"
|
||||
postclick:
|
||||
- "#current-history-panel > div.controls > div.subtitle > a"
|
||||
|
||||
- element: "#dataset-2d9035b3fc152403 > div.warnings > div > a"
|
||||
title: "Undeleting a dataset"
|
||||
intro: |
|
||||
"Galaxy datasets are only marked as deleled and can be recovered by exeecuting this link.
|
||||
Please note that datasets marked as deleted can be purged by your administrator at any time. :beer: "
|
||||
position: "bottom"
|
||||
postclick:
|
||||
- "#dataset-2d9035b3fc152403 > div.warnings > div > a"
|
||||
|
||||
- element: "#current-history-panel > div.controls > div.subtitle > a"
|
||||
title: "Hiding all deleted datasets"
|
||||
intro: "Hiding datasets that were previously deleted works in the same way."
|
||||
position: "bottom"
|
||||
preclick:
|
||||
- "#current-history-panel > div.controls > div.subtitle > a"
|
||||
|
||||
- element: "#current-history-panel > div.controls > div.title > div"
|
||||
title: "Change your History name"
|
||||
intro: "You can change the history name clicking on the title"
|
||||
position: "bottom"
|
||||
preclick:
|
||||
- "#current-history-panel > div.controls > div.title > div"
|
||||
|
||||
- element: "#current-history-panel > div.controls > div.search > div > input"
|
||||
title: "Search your History"
|
||||
intro: "You can filter your history by typing your search term in here. Galaxy supports more advanced filters that can be seen here."
|
||||
position: "left"
|
||||
textinsert: "WWFSMD"
|
||||
preclick:
|
||||
- "#current-history-panel > div.controls > div.search > div > input"
|
||||
|
||||
- element: "#history-options-button"
|
||||
title: "History Options"
|
||||
intro: "In the History menue you will find a lot more usful History options."
|
||||
position: "left"
|
||||
postclick:
|
||||
- "#history-options-button"
|
||||
|
||||
- element: "#history-options-button-menu > li:nth-child(2) > a"
|
||||
title: "History structure"
|
||||
intro: "See the structure of your History by clicking this item."
|
||||
position: "left"
|
||||
postclick:
|
||||
- "#history-options-button-menu > li:nth-child(2) > a"
|
||||
|
||||
- title: "Enjoy your Galaxy Histories"
|
||||
intro: "Thanks for taking this tour! Happy research with Galaxy!"
|
||||
|
||||
@@ -14,6 +14,7 @@ from galaxy.visualization.genomes import Genomes
|
||||
from galaxy.visualization.data_providers.registry import DataProviderRegistry
|
||||
from galaxy.visualization.plugins.registry import VisualizationsRegistry
|
||||
from galaxy.tools.special_tools import load_lib_tools
|
||||
from galaxy.tours import ToursRegistry
|
||||
from galaxy.sample_tracking import external_service_types
|
||||
from galaxy.openid.providers import OpenIDProviders
|
||||
from galaxy.tools.data_manager.manager import DataManagers
|
||||
@@ -105,6 +106,8 @@ class UniverseApplication( object, config.ConfiguresGalaxyMixin ):
|
||||
self,
|
||||
directories_setting=self.config.visualization_plugins_directory,
|
||||
template_cache_dir=self.config.template_cache )
|
||||
# Tours registry
|
||||
self.tour_registry = ToursRegistry(self.config.tour_config_dir)
|
||||
# Load security policy.
|
||||
self.security_agent = self.model.security_agent
|
||||
self.host_security_agent = galaxy.security.HostAgent(
|
||||
|
||||
@@ -106,6 +106,8 @@ class Configuration( object ):
|
||||
self.user_label_filters = listify( kwargs.get( "user_tool_label_filters", [] ), do_strip=True )
|
||||
self.user_section_filters = listify( kwargs.get( "user_tool_section_filters", [] ), do_strip=True )
|
||||
|
||||
self.tour_config_dir = resolve_path( kwargs.get("tour_config_dir", "config/plugins/tours"), self.root)
|
||||
|
||||
self.expose_user_name = kwargs.get( "expose_user_name", False )
|
||||
self.expose_user_email = kwargs.get( "expose_user_email", False )
|
||||
|
||||
|
||||
@@ -0,0 +1,80 @@
|
||||
"""
|
||||
This module manages loading/etc of Galaxy interactive tours.
|
||||
"""
|
||||
|
||||
import os
|
||||
import yaml
|
||||
import logging
|
||||
|
||||
from galaxy import util
|
||||
|
||||
log = logging.getLogger( __name__ )
|
||||
|
||||
|
||||
def tour_loader(contents_dict):
|
||||
# Some of this can be done on the clientside. Maybe even should?
|
||||
title_default = contents_dict.get('title_default', None)
|
||||
for step in contents_dict['steps']:
|
||||
if 'intro' in step:
|
||||
step['content'] = step.pop('intro')
|
||||
if 'position' in step:
|
||||
step['placement'] = step.pop('position')
|
||||
if 'element' not in step:
|
||||
step['orphan'] = True
|
||||
if title_default:
|
||||
step['title'] = title_default
|
||||
return contents_dict
|
||||
|
||||
|
||||
class ToursRegistry(object):
|
||||
|
||||
def __init__(self, tour_directories):
|
||||
self.tour_directories = util.config_directories_from_setting( tour_directories )
|
||||
self.load_tours()
|
||||
|
||||
def tours_by_id_with_description(self):
|
||||
return [{'id': k,
|
||||
'description': self.tours[k].get('description', None),
|
||||
'name': self.tours[k].get('name', None)}
|
||||
for k in self.tours.keys()]
|
||||
|
||||
def load_tour(self, tour_id):
|
||||
for tour_dir in self.tour_directories:
|
||||
tour_path = os.path.join(self.tour_dir, tour_id + ".yaml")
|
||||
if not os.path.exists(tour_path):
|
||||
tour_path = os.path.join(self.tour_dir, tour_id + ".yml")
|
||||
if os.path.exists(tour_path):
|
||||
break
|
||||
if os.path.exists(tour_path):
|
||||
return self._load_tour_from_path(tour_path)
|
||||
else:
|
||||
return None
|
||||
|
||||
def load_tours(self):
|
||||
self.tours = {}
|
||||
for tour_dir in self.tour_directories:
|
||||
for filename in os.listdir(tour_dir):
|
||||
if filename.endswith('.yaml') or filename.endswith('.yml'):
|
||||
self._load_tour_from_path(os.path.join(tour_dir, filename))
|
||||
return self.tours_by_id_with_description()
|
||||
|
||||
def tour_contents(self, tour_id):
|
||||
# Extra format translation could happen here (like the previous intro_to_tour)
|
||||
# For now just return the loaded contents.
|
||||
return self.tours.get(tour_id, None)
|
||||
|
||||
def _load_tour_from_path(self, tour_path):
|
||||
filename = os.path.basename(tour_path)
|
||||
tour_id = os.path.splitext(filename)[0]
|
||||
try:
|
||||
with open(tour_path) as handle:
|
||||
conf = yaml.load(handle)
|
||||
tour = tour_loader(conf)
|
||||
self.tours[tour_id] = tour_loader(conf)
|
||||
log.info("Loaded tour '%s'" % tour_id)
|
||||
return tour
|
||||
except IOError:
|
||||
log.exception("Tour '%s' could not be loaded, error reading file." % tour_id)
|
||||
except yaml.error.YAMLError:
|
||||
log.exception("Tour '%s' could not be loaded, error within file. Please check your yaml syntax." % tour_id)
|
||||
return None
|
||||
@@ -1269,6 +1269,35 @@ def galaxy_directory():
|
||||
return os.path.abspath(galaxy_root_path)
|
||||
|
||||
|
||||
def config_directories_from_setting( directories_setting, galaxy_root=galaxy_root_path ):
|
||||
"""
|
||||
Parse the ``directories_setting`` into a list of relative or absolute
|
||||
filesystem paths that will be searched to discover plugins.
|
||||
|
||||
:type galaxy_root: string
|
||||
:param galaxy_root: the root path of this galaxy installation
|
||||
:type directories_setting: string (default: None)
|
||||
:param directories_setting: the filesystem path (or paths)
|
||||
to search for plugins. Can be CSV string of paths. Will be treated as
|
||||
absolute if a path starts with '/', relative otherwise.
|
||||
:rtype: list of strings
|
||||
:returns: list of filesystem paths
|
||||
"""
|
||||
directories = []
|
||||
if not directories_setting:
|
||||
return directories
|
||||
|
||||
for directory in listify( directories_setting ):
|
||||
directory = directory.strip()
|
||||
if not directory.startswith( '/' ):
|
||||
directory = os.path.join( galaxy_root, directory )
|
||||
if not os.path.exists( directory ):
|
||||
log.warn( 'directory not found: %s', directory )
|
||||
continue
|
||||
directories.append( directory )
|
||||
return directories
|
||||
|
||||
|
||||
def parse_int(value, min_val=None, max_val=None, default=None, allow_none=False):
|
||||
try:
|
||||
value = int(value)
|
||||
|
||||
@@ -64,39 +64,11 @@ class PluginManager( object ):
|
||||
self.skip_bad_plugins = skip_bad_plugins
|
||||
self.plugins = odict.odict()
|
||||
|
||||
self.directories = self.parse_directories_setting( app.config.root, directories_setting )
|
||||
self.directories = util.config_directories_from_setting( directories_setting, app.config.root )
|
||||
|
||||
self.load_configuration()
|
||||
self.load_plugins()
|
||||
|
||||
def parse_directories_setting( self, galaxy_root, directories_setting ):
|
||||
"""
|
||||
Parse the ``directories_setting`` into a list of relative or absolute
|
||||
filesystem paths that will be searched to discover plugins.
|
||||
|
||||
:type galaxy_root: string
|
||||
:param galaxy_root: the root path of this galaxy installation
|
||||
:type directories_setting: string (default: None)
|
||||
:param directories_setting: the filesystem path (or paths)
|
||||
to search for plugins. Can be CSV string of paths. Will be treated as
|
||||
absolute if a path starts with '/', relative otherwise.
|
||||
:rtype: list of strings
|
||||
:returns: list of filesystem paths
|
||||
"""
|
||||
directories = []
|
||||
if not directories_setting:
|
||||
return directories
|
||||
|
||||
for directory in util.listify( directories_setting ):
|
||||
directory = directory.strip()
|
||||
if not directory.startswith( '/' ):
|
||||
directory = os.path.join( galaxy_root, directory )
|
||||
if not os.path.exists( directory ):
|
||||
log.warn( '%s, directory not found: %s', self, directory )
|
||||
continue
|
||||
directories.append( directory )
|
||||
return directories
|
||||
|
||||
def load_configuration( self ):
|
||||
"""
|
||||
Override to load some framework/plugin specifc configuration.
|
||||
|
||||
@@ -0,0 +1,47 @@
|
||||
"""
|
||||
API Controller providing Galaxy Tours
|
||||
"""
|
||||
import logging
|
||||
from galaxy.web import _future_expose_api_anonymous_and_sessionless as expose_api_anonymous_and_sessionless
|
||||
from galaxy.web import require_admin
|
||||
from galaxy.web import expose_api
|
||||
from galaxy.web.base.controller import BaseAPIController
|
||||
|
||||
log = logging.getLogger( __name__ )
|
||||
|
||||
|
||||
class ToursController( BaseAPIController ):
|
||||
|
||||
def __init__( self, app ):
|
||||
super( ToursController, self ).__init__( app )
|
||||
|
||||
@expose_api_anonymous_and_sessionless
|
||||
def index( self, trans, **kwd ):
|
||||
"""
|
||||
*GET /api/tours/
|
||||
Displays available tours
|
||||
"""
|
||||
return self.app.tour_registry.tours_by_id_with_description()
|
||||
|
||||
@expose_api_anonymous_and_sessionless
|
||||
def show( self, trans, tour_id, **kwd ):
|
||||
"""
|
||||
load_config( self, trans, Tour_config_file, **kwd )
|
||||
* GET /api/tours/{tour_id}:
|
||||
Read a yaml file containing the specified tour definition
|
||||
|
||||
:returns: tour definition
|
||||
:rtype: dictionary
|
||||
"""
|
||||
return self.app.tour_registry.tour_contents(tour_id)
|
||||
|
||||
@expose_api
|
||||
@require_admin
|
||||
def update_tour( self, trans, tour_id, **kwd ):
|
||||
"""
|
||||
This simply reloads tours right now. It's a quick hack.
|
||||
|
||||
TODO: allow creation of new tours (which get written to the
|
||||
filesystem).
|
||||
"""
|
||||
return self.app.tour_registry.load_tour(tour_id)
|
||||
@@ -406,6 +406,28 @@ def populate_api_routes( webapp, app ):
|
||||
action='get_api_key',
|
||||
conditions=dict( method=[ "GET" ] ) )
|
||||
|
||||
# =====================
|
||||
# ===== TOURS API =====
|
||||
# =====================
|
||||
|
||||
webapp.mapper.connect( 'index',
|
||||
'/api/tours',
|
||||
controller='tours',
|
||||
action='index',
|
||||
conditions=dict( method=["GET"] ) )
|
||||
|
||||
webapp.mapper.connect( 'show',
|
||||
'/api/tours/{tour_id}',
|
||||
controller='tours',
|
||||
action='show',
|
||||
conditions=dict( method=[ "GET" ] ) )
|
||||
|
||||
webapp.mapper.connect( 'update_tour',
|
||||
'/api/tours/{tour_id}',
|
||||
controller='tours',
|
||||
action='update_tour',
|
||||
conditions=dict( method=[ "POST" ] ) )
|
||||
|
||||
# =======================
|
||||
# ===== LIBRARY API =====
|
||||
# =======================
|
||||
|
||||
@@ -0,0 +1 @@
|
||||
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|
||||
File diff suppressed because one or more lines are too long
@@ -1 +1 @@
|
||||
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define(["galaxy.masthead"],function(a){var b=Backbone.Model.extend({initialize:function(a){this.options=a.config,this.masthead=a.masthead,this.create()},create:function(){var b=new a.GalaxyMastheadTab({id:"analysis",title:"Analyze Data",content:"",title_attribute:"Analysis home view"});this.masthead.append(b);var c={id:"workflow",title:"Workflow",content:"workflow",title_attribute:"Chain tools into workflows"};Galaxy.user.id||(c.disabled=!0);var d=new a.GalaxyMastheadTab(c);this.masthead.append(d);var e=new a.GalaxyMastheadTab({id:"shared",title:"Shared Data",content:"library/index",title_attribute:"Access published resources"});if(e.add({title:"Data Libraries deprecated",content:"library/index"}),e.add({title:"Data Libraries",content:"library/list",divider:!0}),e.add({title:"Published Histories",content:"history/list_published"}),e.add({title:"Published Workflows",content:"workflow/list_published"}),e.add({title:"Published Visualizations",content:"visualization/list_published"}),e.add({title:"Published Pages",content:"page/list_published"}),this.masthead.append(e),this.options.user_requests){var f=new a.GalaxyMastheadTab({id:"lab",title:"Lab"});f.add({title:"Sequencing Requests",content:"requests/index"}),f.add({title:"Find Samples",content:"requests/find_samples_index"}),f.add({title:"Help",content:this.options.lims_doc_url}),this.masthead.append(f)}var g={id:"visualization",title:"Visualization",content:"visualization/list",title_attribute:"Visualize datasets"};Galaxy.user.id||(g.disabled=!0);var h=new a.GalaxyMastheadTab(g);if(Galaxy.user.id&&(h.add({title:"New Track Browser",content:"visualization/trackster",target:"_frame"}),h.add({title:"Saved Visualizations",content:"visualization/list",target:"_frame"})),this.masthead.append(h),Galaxy.user.get("is_admin")){var i=new a.GalaxyMastheadTab({id:"admin",title:"Admin",content:"admin",extra_class:"admin-only",title_attribute:"Administer this Galaxy"});this.masthead.append(i)}var j=new a.GalaxyMastheadTab({id:"help",title:"Help",title_attribute:"Support, contact, and community hubs"});if(this.options.biostar_url&&(j.add({title:"Galaxy Biostar",content:this.options.biostar_url_redirect,target:"_blank"}),j.add({title:"Ask a question",content:"biostar/biostar_question_redirect",target:"_blank"})),j.add({title:"Support",content:this.options.support_url,target:"_blank"}),j.add({title:"Search",content:this.options.search_url,target:"_blank"}),j.add({title:"Mailing Lists",content:this.options.mailing_lists,target:"_blank"}),j.add({title:"Videos",content:this.options.screencasts_url,target:"_blank"}),j.add({title:"Wiki",content:this.options.wiki_url,target:"_blank"}),j.add({title:"How to Cite Galaxy",content:this.options.citation_url,target:"_blank"}),this.options.terms_url&&j.add({title:"Terms and Conditions",content:this.options.terms_url,target:"_blank"}),j.add({title:"Interactive Tours",content:"page/list_tours",target:"galaxy_main"}),this.masthead.append(j),Galaxy.user.id){var k=new a.GalaxyMastheadTab({id:"user",title:"User",extra_class:"loggedin-only",title_attribute:"Account preferences and saved data"});k.add({title:"Logged in as "+Galaxy.user.get("email")}),k.add({title:"Preferences",content:"user?cntrller=user",target:"galaxy_main"}),k.add({title:"Custom Builds",content:"user/dbkeys",target:"galaxy_main"}),k.add({title:"Logout",content:"user/logout",target:"_top",divider:!0}),k.add({title:"Saved Histories",content:"history/list",target:"galaxy_main"}),k.add({title:"Saved Datasets",content:"dataset/list",target:"galaxy_main"}),k.add({title:"Saved Pages",content:"page/list",target:"_top"}),k.add({title:"API Keys",content:"user/api_keys?cntrller=user",target:"galaxy_main"}),this.options.use_remote_user&&k.add({title:"Public Name",content:"user/edit_username?cntrller=user",target:"galaxy_main"}),this.masthead.append(k)}else{var k=new a.GalaxyMastheadTab({id:"user",title:"User",extra_class:"loggedout-only",title_attribute:"Account registration or login"});k.add({title:"Login",content:"user/login",target:"galaxy_main"}),this.options.allow_user_creation&&k.add({title:"Register",content:"user/create",target:"galaxy_main"}),this.masthead.append(k)}this.options.active_view&&this.masthead.highlight(this.options.active_view)}});return{GalaxyMenu:b}});
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||||
//# sourceMappingURL=../maps/galaxy.menu.js.map
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define(["mvc/ui/ui-frames"],function(a){return Backbone.View.extend({initialize:function(b){var c=this;b=b||{},this.frames=new a.View({visible:!1}),this.setElement(this.frames.$el),this.buttonActive=b.collection.add({icon:"fa-th",tooltip:"Enable/Disable Scratchbook",onclick:function(){c.active=!c.active,c.buttonActive.set({toggle:c.active,show_note:c.active,note_cls:c.active&&"fa fa-check"}),!c.active&&c.frames.hide()},onbeforeunload:function(){return c.frames.length()>0?"You opened "+c.frames.length()+" frame(s) which will be lost.":void 0}}),this.buttonLoad=b.collection.add({icon:"fa-eye",tooltip:"Show/Hide Scratchbook",show_note:!0,visible:!1,onclick:function(){c.frames.visible?c.frames.hide():c.frames.show()}}),this.frames.on("add remove",function(){this.visible&&0==this.length()&&this.hide(),c.buttonLoad.set({note:this.length(),visible:this.length()>0})}).on("show hide ",function(){c.buttonLoad.set({toggle:this.visible,icon:this.visible&&"fa-eye"||"fa-eye-slash"})})},addDataset:function(a){var b=this;require(["mvc/dataset/data"],function(c){var d=new c.Dataset({id:a});$.when(d.fetch()).then(function(){var a={title:d.get("name")},e=_.find(["tabular","interval"],function(a){return-1!==d.get("data_type").indexOf(a)});if(e){var f=new c.TabularDataset(d.toJSON());_.extend(a,{content:function(a){c.createTabularDatasetChunkedView({model:f,parent_elt:a,embedded:!0,height:"100%"})}})}else _.extend(a,{url:Galaxy.root+"datasets/"+d.id+"/display/?preview=True"});b.add(a)})})},addTrackster:function(a){var b=this;require(["viz/visualization","viz/trackster"],function(c,d){var e=new c.Visualization({id:a});$.when(e.fetch()).then(function(){var a=new d.TracksterUI(Galaxy.root),c={title:e.get("name"),type:"other",content:function(b){var c={container:b,name:e.get("title"),id:e.id,dbkey:e.get("dbkey"),stand_alone:!1},d=e.get("latest_revision"),f=d.config.view.drawables;_.each(f,function(a){a.dataset={hda_ldda:a.hda_ldda,id:a.dataset_id}}),view=a.create_visualization(c,d.config.viewport,d.config.view.drawables,d.config.bookmarks,!1)}};b.add(c)})})},add:function(a){if("_blank"==a.target)window.open(a.url);else if("_top"==a.target||"_parent"==a.target||"_self"==a.target)window.location=a.url;else if(this.active)this.frames.add(a);else{var b=$(window.parent.document).find("#galaxy_main");if("galaxy_main"==a.target||"center"==a.target)if(0===b.length){var c=a.url;c+=-1==c.indexOf("?")?"?":"&",c+="use_panels=True",window.location=c}else b.attr("src",a.url);else window.location=a.url}}})});
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||||
define(["mvc/ui/ui-frames"],function(a){return Backbone.View.extend({initialize:function(b){var c=this;b=b||{},this.frames=new a.View({visible:!1}),this.setElement(this.frames.$el),this.buttonActive=b.collection.add({id:"enable-scratchbook",icon:"fa-th",tooltip:"Enable/Disable Scratchbook",onclick:function(){c.active=!c.active,c.buttonActive.set({toggle:c.active,show_note:c.active,note_cls:c.active&&"fa fa-check"}),!c.active&&c.frames.hide()},onbeforeunload:function(){return c.frames.length()>0?"You opened "+c.frames.length()+" frame(s) which will be lost.":void 0}}),this.buttonLoad=b.collection.add({id:"show-scratchbook",icon:"fa-eye",tooltip:"Show/Hide Scratchbook",show_note:!0,visible:!1,onclick:function(){c.frames.visible?c.frames.hide():c.frames.show()}}),this.frames.on("add remove",function(){this.visible&&0==this.length()&&this.hide(),c.buttonLoad.set({note:this.length(),visible:this.length()>0})}).on("show hide ",function(){c.buttonLoad.set({toggle:this.visible,icon:this.visible&&"fa-eye"||"fa-eye-slash"})})},addDataset:function(a){var b=this;require(["mvc/dataset/data"],function(c){var d=new c.Dataset({id:a});$.when(d.fetch()).then(function(){var a={title:d.get("name")},e=_.find(["tabular","interval"],function(a){return-1!==d.get("data_type").indexOf(a)});if(e){var f=new c.TabularDataset(d.toJSON());_.extend(a,{content:function(a){c.createTabularDatasetChunkedView({model:f,parent_elt:a,embedded:!0,height:"100%"})}})}else _.extend(a,{url:Galaxy.root+"datasets/"+d.id+"/display/?preview=True"});b.add(a)})})},addTrackster:function(a){var b=this;require(["viz/visualization","viz/trackster"],function(c,d){var e=new c.Visualization({id:a});$.when(e.fetch()).then(function(){var a=new d.TracksterUI(Galaxy.root),c={title:e.get("name"),type:"other",content:function(b){var c={container:b,name:e.get("title"),id:e.id,dbkey:e.get("dbkey"),stand_alone:!1},d=e.get("latest_revision"),f=d.config.view.drawables;_.each(f,function(a){a.dataset={hda_ldda:a.hda_ldda,id:a.dataset_id}}),view=a.create_visualization(c,d.config.viewport,d.config.view.drawables,d.config.bookmarks,!1)}};b.add(c)})})},add:function(a){if("_blank"==a.target)window.open(a.url);else if("_top"==a.target||"_parent"==a.target||"_self"==a.target)window.location=a.url;else if(this.active)this.frames.add(a);else{var b=$(window.parent.document).find("#galaxy_main");if("galaxy_main"==a.target||"center"==a.target)if(0===b.length){var c=a.url;c+=-1==c.indexOf("?")?"?":"&",c+="use_panels=True",window.location=c}else b.attr("src",a.url);else window.location=a.url}}})});
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//# sourceMappingURL=../../maps/layout/scratchbook.js.map
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define(["libs/bootstrap-tour"],function(){var a={storage:window.sessionStorage,onEnd:function(){sessionStorage.removeItem("activeGalaxyTour")},delay:150,orphan:!0},b=function(a){return _.each(a.steps,function(a){a.preclick&&(a.onShow=function(){_.each(a.preclick,function(a){$(a).click()})}),a.postclick&&(a.onHide=function(){_.each(a.postclick,function(a){$(a).click()})}),a.textinsert&&(a.onShown=function(){$(a.element).val(a.textinsert).trigger("change")})}),a};if("undefined"!=typeof Galaxy)var c=Galaxy.root;else var c="/";var d=Backbone.Model.extend({urlRoot:c+"api/tours"}),e=Backbone.Collection.extend({url:c+"api/tours",model:d}),f=function(d){var e=c+"api/tours/"+d;$.getJSON(e,function(c){tourdata=b(c),console.log(tourdata),sessionStorage.setItem("activeGalaxyTour",JSON.stringify(c));var d=new Tour(_.extend({steps:tourdata.steps},a));d.init(),d.goTo(0),d.restart()})},g=Backbone.View.extend({initialize:function(){var a=this;this.setElement("<div/>"),this.model=new e,this.model.fetch({success:function(){a.render()},error:function(){console.error("Failed to fetch tours.")}})},render:function(){var a=_.template(["<h2>Galaxy Tours</h2>","<p>This page presents a list of interactive tours available on this Galaxy server. ","Select any tour to get started (and remember, you can click 'End Tour' at any time).</p>","<ul>","<% _.each(tours, function(tour) { %>","<li>",'<a href="#" class="tourItem" data-tour.id=<%- tour.id %>>',"<%- tour.attributes.name || tour.id %>","</a>",' - <%- tour.attributes.description || "No description given." %>',"</li>","<% }); %>","</ul>"].join(""));this.$el.html(a({tours:this.model.models})).on("click",".tourItem",function(){f($(this).data("tour.id"))})}});return{ToursView:g,hooked_tour_from_data:b,tour_opts:a,giveTour:f}});
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//# sourceMappingURL=../../maps/mvc/tours.js.map
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define([],function(){var a=Backbone.Model.extend({defaults:{icon:"fa-upload",tooltip:"Download from URL or upload files from disk",label:"Load Data",percentage:0,status:""}}),b=Backbone.View.extend({model:null,initialize:function(a){var b=this,c=a.model;this.setElement(this._template()),this.$el.on("click",function(b){a.onclick(b)}),this.$el.tooltip({title:c.get("tooltip"),placement:"bottom"}),c.on("change:percentage",function(){b._percentage(c.get("percentage"))}),c.on("change:status",function(){b._status(c.get("status"))});var b=this;$(window).on("beforeunload",function(){var b="";return a.onunload&&(b=a.onunload()),""!=b?b:void 0})},_status:function(a){var b=this.$el.find(".progress-bar");b.removeClass(),b.addClass("progress-bar"),b.addClass("progress-bar-notransition"),""!=a&&b.addClass("progress-bar-"+a)},_percentage:function(a){var b=this.$el.find(".progress-bar");b.css({width:a+"%"})},_template:function(){return'<div class="upload-button"><div class="progress"><div class="progress-bar"/><a class="panel-header-button" href="javascript:void(0)"><span class="fa fa-upload"/></a></div></div>'}});return{Model:a,View:b}});
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define([],function(){var a=Backbone.Model.extend({defaults:{icon:"fa-upload",tooltip:"Download from URL or upload files from disk",label:"Load Data",percentage:0,status:""}}),b=Backbone.View.extend({model:null,initialize:function(a){var b=this,c=a.model;this.setElement(this._template()),this.$el.on("click",function(b){a.onclick(b)}),this.$el.tooltip({title:c.get("tooltip"),placement:"bottom"}),c.on("change:percentage",function(){b._percentage(c.get("percentage"))}),c.on("change:status",function(){b._status(c.get("status"))});var b=this;$(window).on("beforeunload",function(){var b="";return a.onunload&&(b=a.onunload()),""!=b?b:void 0})},_status:function(a){var b=this.$el.find(".progress-bar");b.removeClass(),b.addClass("progress-bar"),b.addClass("progress-bar-notransition"),""!=a&&b.addClass("progress-bar-"+a)},_percentage:function(a){var b=this.$el.find(".progress-bar");b.css({width:a+"%"})},_template:function(){return'<div class="upload-button"><div class="progress"><div class="progress-bar"/><a class="panel-header-button" href="javascript:void(0)" id="tool-panel-upload-button"><span class="fa fa-upload"/></a></div></div>'}});return{Model:a,View:b}});
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//# sourceMappingURL=../../../maps/mvc/upload/upload-button.js.map
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@@ -1,2 +1,2 @@
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function replace_big_select_inputs(a,b,c){function d(a){var b=$(a),c={placeholder:"Click to select",closeOnSelect:!b.is("[MULTIPLE]"),dropdownAutoWidth:!0,containerCssClass:"select2-minwidth"};return a.select2(c)}jQuery.fn.select2&&(void 0===a&&(a=20),void 0===b&&(b=3e3),c=c||$("select"),c.each(function(){var c=$(this).not("[multiple]"),e=c.find("option").length;a>e||e>b||c.hasClass("no-autocomplete")||d(c)}))}function init_refresh_on_change(){$("select[refresh_on_change='true']").off("change").change(function(){var a=$(this),b=a.val(),c=a.attr("refresh_on_change_values");if(c){c=c.split(",");var d=a.attr("last_selected_value");if(-1===$.inArray(b,c)&&-1===$.inArray(d,c))return}$(window).trigger("refresh_on_change"),$(document).trigger("convert_to_values"),a.get(0).form.submit()}),$(":checkbox[refresh_on_change='true']").off("click").click(function(){var a=$(this),b=a.val(),c=a.attr("refresh_on_change_values");if(c){c=c.split(",");var d=a.attr("last_selected_value");if(-1===$.inArray(b,c)&&-1===$.inArray(d,c))return}$(window).trigger("refresh_on_change"),a.get(0).form.submit()}),$("a[confirm]").off("click").click(function(){return confirm($(this).attr("confirm"))})}window.jQuery=jQuery,window.$=jQuery,window._=_,window.Backbone=Backbone,window.Handlebars=Handlebars,window.panels=require("layout/panel"),_.extend(window,require("layout/modal")),window.async_save_text=require("utils/async-save-text");var POPUPMENU=require("ui/popupmenu");window.make_popupmenu=POPUPMENU.make_popupmenu,window.make_popup_menus=POPUPMENU.make_popup_menus,window.init_tag_click_function=require("ui/autocom_tagging"),window.init_refresh_on_change=init_refresh_on_change,$(document).ready(function(){init_refresh_on_change(),$.fn.tooltip&&($(".unified-panel-header [title]").tooltip({placement:"bottom"}),$("[title]").tooltip()),make_popup_menus(),replace_big_select_inputs(20,1500),$("a").click(function(){var a=$(this),b=parent.frames&&parent.frames.galaxy_main;if("galaxy_main"==a.attr("target")&&!b){var c=a.attr("href");c+=-1==c.indexOf("?")?"?":"&",c+="use_panels=True",a.attr("href",c),a.attr("target","_self")}return a})});
|
||||
function replace_big_select_inputs(a,b,c){function d(a){var b=$(a),c={placeholder:"Click to select",closeOnSelect:!b.is("[MULTIPLE]"),dropdownAutoWidth:!0,containerCssClass:"select2-minwidth"};return a.select2(c)}jQuery.fn.select2&&(void 0===a&&(a=20),void 0===b&&(b=3e3),c=c||$("select"),c.each(function(){var c=$(this).not("[multiple]"),e=c.find("option").length;a>e||e>b||c.hasClass("no-autocomplete")||d(c)}))}function init_refresh_on_change(){$("select[refresh_on_change='true']").off("change").change(function(){var a=$(this),b=a.val(),c=a.attr("refresh_on_change_values");if(c){c=c.split(",");var d=a.attr("last_selected_value");if(-1===$.inArray(b,c)&&-1===$.inArray(d,c))return}$(window).trigger("refresh_on_change"),$(document).trigger("convert_to_values"),a.get(0).form.submit()}),$(":checkbox[refresh_on_change='true']").off("click").click(function(){var a=$(this),b=a.val(),c=a.attr("refresh_on_change_values");if(c){c=c.split(",");var d=a.attr("last_selected_value");if(-1===$.inArray(b,c)&&-1===$.inArray(d,c))return}$(window).trigger("refresh_on_change"),a.get(0).form.submit()}),$("a[confirm]").off("click").click(function(){return confirm($(this).attr("confirm"))})}window.jQuery=jQuery,window.$=jQuery,window._=_,window.Backbone=Backbone,window.Handlebars=Handlebars,window.panels=require("layout/panel"),_.extend(window,require("layout/modal")),window.async_save_text=require("utils/async-save-text");var POPUPMENU=require("ui/popupmenu");window.make_popupmenu=POPUPMENU.make_popupmenu,window.make_popup_menus=POPUPMENU.make_popup_menus,window.init_tag_click_function=require("ui/autocom_tagging");var TOURS=require("mvc/tours");window.init_refresh_on_change=init_refresh_on_change,$(document).ready(function(){init_refresh_on_change(),$.fn.tooltip&&($(".unified-panel-header [title]").tooltip({placement:"bottom"}),$("[title]").tooltip()),make_popup_menus(),replace_big_select_inputs(20,1500),$("a").click(function(){var a=$(this),b=parent.frames&&parent.frames.galaxy_main;if("galaxy_main"==a.attr("target")&&!b){var c=a.attr("href");c+=-1==c.indexOf("?")?"?":"&",c+="use_panels=True",a.attr("href",c),a.attr("target","_self")}return a});try{if(urlparms=_.object(_.compact(_.map(location.search.slice(1).split("&"),function(a){return a?a.split("="):void 0}))),urlparms.tour_id){var a=urlparms.tour_id;delete urlparms.tour_id;var b=$(location).attr("href"),c=_.map(Object.getOwnPropertyNames(urlparms),function(a){return"?"+[a,urlparms[a]].join("=")}).join("&");b=window.location.href.split("?")[0],"?"!==c&&(b+=c),history.pushState(null,null,b),TOURS.giveTour(a)}else if(et=JSON.parse(sessionStorage.getItem("activeGalaxyTour")),et&&(et=TOURS.hooked_tour_from_data(et),et&&et.steps)){var d=new Tour(_.extend({steps:et.steps},TOURS.tour_opts));d.init(),d.restart()}}catch(e){console.log("Tour loading failure, you'll need to restart the tour manually."+e)}});
|
||||
//# sourceMappingURL=../maps/onload.js.map
|
||||
+73
@@ -0,0 +1,73 @@
|
||||
/* ========================================================================
|
||||
* bootstrap-tour - v0.10.1
|
||||
* http://bootstraptour.com
|
||||
* ========================================================================
|
||||
* Copyright 2012-2013 Ulrich Sossou
|
||||
*
|
||||
* ========================================================================
|
||||
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||
* you may not use this file except in compliance with the License.
|
||||
* You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
* ========================================================================
|
||||
*/
|
||||
|
||||
.tour-backdrop {
|
||||
position: fixed;
|
||||
top: 0;
|
||||
right: 0;
|
||||
bottom: 0;
|
||||
left: 0;
|
||||
z-index: 1100;
|
||||
background-color: #000;
|
||||
opacity: 0.8;
|
||||
filter: alpha(opacity=80);
|
||||
}
|
||||
.tour-step-backdrop {
|
||||
position: relative;
|
||||
z-index: 1101;
|
||||
background: inherit;
|
||||
}
|
||||
.tour-step-backdrop > td {
|
||||
position: relative;
|
||||
z-index: 1101;
|
||||
}
|
||||
.tour-step-background {
|
||||
position: absolute !important;
|
||||
z-index: 1100;
|
||||
background: inherit;
|
||||
border-radius: 6px;
|
||||
}
|
||||
.popover[class*="tour-"] {
|
||||
z-index: 1100;
|
||||
}
|
||||
.popover[class*="tour-"] .popover-navigation {
|
||||
padding: 9px 14px;
|
||||
}
|
||||
.popover[class*="tour-"] .popover-navigation *[data-role="end"] {
|
||||
float: right;
|
||||
}
|
||||
.popover[class*="tour-"] .popover-navigation *[data-role="prev"],
|
||||
.popover[class*="tour-"] .popover-navigation *[data-role="next"],
|
||||
.popover[class*="tour-"] .popover-navigation *[data-role="end"] {
|
||||
cursor: pointer;
|
||||
}
|
||||
.popover[class*="tour-"] .popover-navigation *[data-role="prev"].disabled,
|
||||
.popover[class*="tour-"] .popover-navigation *[data-role="next"].disabled,
|
||||
.popover[class*="tour-"] .popover-navigation *[data-role="end"].disabled {
|
||||
cursor: default;
|
||||
}
|
||||
.popover[class*="tour-"].orphan {
|
||||
position: fixed;
|
||||
margin-top: 0;
|
||||
}
|
||||
.popover[class*="tour-"].orphan .arrow {
|
||||
display: none;
|
||||
}
|
||||
@@ -30,6 +30,7 @@
|
||||
## Default stylesheets
|
||||
<%def name="stylesheets()">
|
||||
${h.css('base')}
|
||||
${h.css('bootstrap-tour')}
|
||||
</%def>
|
||||
|
||||
## Default javascripts
|
||||
@@ -49,6 +50,7 @@
|
||||
## TODO: remove when all libs are required directly in modules
|
||||
'bundled/libs.bundled',
|
||||
'libs/require',
|
||||
"libs/bootstrap-tour",
|
||||
)}
|
||||
|
||||
<script type="text/javascript">
|
||||
|
||||
@@ -22,7 +22,8 @@
|
||||
<%def name="stylesheets()">
|
||||
${h.css(
|
||||
'base',
|
||||
'jquery.rating'
|
||||
'jquery.rating',
|
||||
'bootstrap-tour'
|
||||
)}
|
||||
<style type="text/css">
|
||||
#center {
|
||||
|
||||
@@ -17,6 +17,7 @@
|
||||
'jquery-ui/smoothness/jquery-ui',
|
||||
## base needs to come after jquery-ui because of ui-button, ui- etc. name collision
|
||||
'base',
|
||||
'bootstrap-tour',
|
||||
)}
|
||||
${ page_setup() }
|
||||
</head>
|
||||
|
||||
@@ -0,0 +1,17 @@
|
||||
from base import api
|
||||
|
||||
|
||||
class TourApiTestCase( api.ApiTestCase ):
|
||||
|
||||
def test_index(self):
|
||||
response = self._get( "tours" )
|
||||
self._assert_status_code_is( response, 200 )
|
||||
tours = response.json()
|
||||
tour_keys = map(lambda t: t["id"], tours)
|
||||
assert "core.history" in tour_keys
|
||||
|
||||
def test_show(self):
|
||||
response = self._get( "tours/core.history" )
|
||||
self._assert_status_code_is( response, 200 )
|
||||
tour = response.json()
|
||||
self._assert_has_keys(tour, "name", "description", "title_default", "steps")
|
||||
Reference in New Issue
Block a user