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Merge pull request #22431 from mvdbeek/minor-api-fixes

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[26.0] Minor api fixes for Sentry noise
This commit is contained in:
Marius van den Beek
2026-04-09 13:20:04 +02:00
committed by GitHub
parent b7462a216b 3701c83e75
commit 6aeaaa87b3
3 changed files with 6 additions and 2 deletions
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lib/galaxy/managers/genomes.py
+4
View File
@@ -46,12 +46,16 @@ class GenomesManager:
) -> Any:
if reference:
region = self.genomes.reference(trans, dbkey=id, chrom=chrom, low=low, high=high)
if region is None:
raise ReferenceDataError(f"No reference data for {id}")
return {"dataset_type": "refseq", "data": region.sequence}
else:
return self.genomes.chroms(trans, dbkey=id, num=num, chrom=chrom, low=low)
def get_sequence(self, trans: ProvidesUserContext, id: str, chrom: str, low: int, high: int) -> Any:
region = self.genomes.reference(trans, dbkey=id, chrom=chrom, low=low, high=high)
if region is None:
raise ReferenceDataError(f"No reference data for {id}")
return region.sequence
def get_indexes(self, id: str, index_type: str) -> Any:
lib/galaxy/webapps/galaxy/controllers/history.py
+1 -1
View File
@@ -53,7 +53,7 @@ class HistoryController(BaseUIController, SharableMixin, UsesAnnotations, UsesIt
return ""
@expose_api_anonymous
def view(self, trans, id=None, show_deleted=False, show_hidden=False, use_panels=True):
def view(self, trans, id=None, show_deleted=False, show_hidden=False, use_panels=True, **kwargs):
"""
View a history. If a history is importable, then it is viewable by any user.
"""
lib/galaxy/webapps/galaxy/controllers/tool_runner.py
+1 -1
View File
@@ -173,7 +173,7 @@ class ToolRunner(BaseUIController):
tool = self.__get_tool(tool_id)
# No tool matching the tool id, display an error (shouldn't happen)
if not tool:
log.error("data_source_redirect called with tool id '%s' but no such tool exists", tool_id)
log.debug("data_source_redirect called with tool id '%s' but no such tool exists", tool_id)
trans.log_event(f"Tool id '{tool_id}' does not exist")
trans.response.status = 404
return trans.show_error_message(f"Tool '{escape(tool_id)}' does not exist.")