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Fix test_sniff unittest

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This commit is contained in:
mvdbeek
2019-05-17 15:41:14 -04:00
committed by John Chilton
parent 06aa7d21a8
commit 6878e3973a
1 changed files with 8 additions and 11 deletions
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test/unit/datatypes/test_sniff.py
+8 -11
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@@ -1,3 +1,4 @@
import io
import tempfile
from galaxy.datatypes.sniff import (
@@ -9,20 +10,16 @@ from galaxy.datatypes.sniff import (
def assert_converts_to_1234_sep2tabs(content, line_ending="\n"):
print("\r" in content)
tf = tempfile.NamedTemporaryFile(delete=False, mode='w')
tf.write(content)
tf.close()
with tempfile.NamedTemporaryFile(delete=False, mode='w') as tf:
tf.write(content)
rval = sep2tabs(tf.name, tmp_prefix="gxtest", tmp_dir=tempfile.gettempdir())
assert rval == (2, None), rval
assert '1\t2%s3\t4%s' % (line_ending, line_ending) == open(tf.name).read()
assert '1\t2%s3\t4%s' % (line_ending, line_ending) == io.open(tf.name, newline='').read()
def assert_converts_to_1234_convert_sep2tabs(content, expected='1\t2\n3\t4\n', line_ending="\n"):
print("\r" in content)
tf = tempfile.NamedTemporaryFile(delete=False, mode='w')
tf.write(content)
tf.close()
with tempfile.NamedTemporaryFile(delete=False, mode='w') as tf:
tf.write(content)
rval = convert_newlines_sep2tabs(tf.name, tmp_prefix="gxtest", tmp_dir=tempfile.gettempdir())
assert rval == (2, None), rval
assert expected == open(tf.name).read()
@@ -31,9 +28,9 @@ def assert_converts_to_1234_convert_sep2tabs(content, expected='1\t2\n3\t4\n', l
def assert_converts_to_1234_convert(content, block_size=1024):
fname = get_test_fname('temp2.txt')
with open(fname, 'w') as fh:
_ = fh.write(content)
fh.write(content)
rval = convert_newlines(fname, tmp_prefix="gxtest", tmp_dir=tempfile.gettempdir(), block_size=block_size)
#assert rval == (2, None), "rval != %s for %s" % (rval, content)
assert rval == (2, None), "rval != %s for %s" % (rval, content)
actual_contents = open(fname).read()
assert '1 2\n3 4\n' == actual_contents, actual_contents